ViewGene

Locus Name:
GeneID:
Location:

GeneID:1919
TrivialName: PA14_65640
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_65640
PAO1 Ortholog Locus:PA4966
Sequence Length:1014
Protein Length:337
Start: 5847418
Stop: 5846405
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08351.1|AE004909_7 (AE004909) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 337/337 (100%), Positives = 337/337 (100%)
Sequence:
ATGCGCCGCCTGCTGGCCATCCTCGGCCTGTTCGGGGGCCTGGTCCAGGCGGCCGAGGCGCCGCCAGAGCCA
CCGGTTCCGGCAGCCTTGAGCTTCATCTCCGAACATGCGGTGGAGGGCATGCGCGGCGGCAACCTCTCCGGG
CTGGCCTGGTGTGGCGGCGCGCTGTGGACGGTTTCCGACCGCGACGACGACCGCCTGTATCGCCTGCAGCCC
TCGGCCGAAGGCTCCGACCAGCCCTGGCAGGCCGAGGCCGAGAGTTTCATCGCTCCGACCCCGCCGGACAGC
GGGTTGCCCTGGGGCATGAGCACGCGGGTCTGGCTCAGTGGCCTGGTGCGCGGCGGCAACCTCGACTTCGAA
GGCATCGCCTGCGATGCCGCCGGCAATCGCTACCTGGTCAGCGAGGCGCACGCGGCGGTCCTGCAACTGCCG
GTGAGCGGCGCGCCGAACTGGCTGCGCCTGCCGCCCGGCCTGCTGCCGCAAGCGCGGGCCAGCGGCATGCTG
ATGAATTTCAACGCGTTGTTCGAAGGGATCGCCGTCGACCCCGAGGGCAAGCGCCTCTGGCTGGCTGCCGAG
CGCGAGCGCCGCGGCCTGCTGGTGGCCCACCGCGACAACAGTGCCTGGCGCTGCGAGGGCAGCTGCGTACTG
CTCGCCGAGGGCGGCAAGATCGAGCCGCCGCCGGAACTGGGCAGCGCGCGCAAGCTGCCGAAGGATTTCTCC
GACCTCGCCTTCTACCGCGGCAAGCTGTTCACCCTGGAGCGCCTGGCGCATCAGATCTGCCGCCGCGACCTG
GCCCAGGCCAAGGTCGAGCGCTGCTGGTCGTTCGCCTCGGCGGTCCTGGCGCCGGAGCGTCGCTACGAGCTG
CCTTATGGCGTCGCGGAAGCCCTGTCGCTGGACGACAAGGGCGCCTGGCTGGGCATCGACAATGGCGACCAT
GCGCGCGCCGATGGCGACGTGCGGCCCTTCGTCCTGCGCTTCGCCGCGCCCGCCGGCGGCTGGTTGGGGGAC
AAGTGA
Translation:
MRRLLAILGLFGGLVQAAEAPPEPPVPAALSFISEHAVEGMRGGNLSGLAWCGGALWTVSDRDDDRLYRLQP
SAEGSDQPWQAEAESFIAPTPPDSGLPWGMSTRVWLSGLVRGGNLDFEGIACDAAGNRYLVSEAHAAVLQLP
VSGAPNWLRLPPGLLPQARASGMLMNFNALFEGIAVDPEGKRLWLAAERERRGLLVAHRDNSAWRCEGSCVL
LAEGGKIEPPPELGSARKLPKDFSDLAFYRGKLFTLERLAHQICRRDLAQAKVERCWSFASAVLAPERRYEL
PYGVAEALSLDDKGAWLGIDNGDHARADGDVRPFVLRFAAPAGGWLGDK*
AnnotationID:1928GeneID:1919
AnnotatorUID: diggins
Modification Date/Time: 2005-03-13 17:05:28
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA4966
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
Genomic Context:
Comment:
ReferenceID:3841
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:20988
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:35053
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:1919_cdd.html
URL:
Homologs By Global Alignment
Gene ID:1919

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
3374 PA4966_tr translation of PA4966 337 99.99 99.99 0 1792.0
104421 gb|AAG08351.1|AE004909_7 (AE004909) hypothetical protein PA4966 [Pseudomonas aeruginosa PAO1] 337 99.99 99.99 0 1792.0
104423 gb|AAO58390.1| (AE016874) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000] 339 57.81 69.61 11 974.0
104422 gb|AAN70481.1|AE016689_9 (AE016792) conserved hypothetical protein [Pseudomonas putida KT2440] 351 52.99 66.66 24 987.0
GC ORFID: 44921How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4966Glimmer Score:
Start: 5111100Stop: 5110087
Length: 1014
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA4966 translation of PA4966Homolog Bit Score 694.0
Other Homologs: psyr_15may02_Scaffold2_revised_gene3412 (ORF: BLASTX 363.0), t_PA4966 (ORF: GLIMMER)
GC ORF Sequence
ATGCGCCGCCTGCTGGCCATCCTCGGCCTGTTCGGGGGCCTGGTCCAGGCGGCCGAGGCGCCGCCAGAGCCA
CCGGTTCCGGCAGCCTTGAGCTTCATCTCCGAACATGCGGTGGAGGGCATGCGCGGCGGCAACCTCTCCGGG
CTGGCCTGGTGTGGCGGCGCGCTGTGGACGGTTTCCGACCGCGACGACGACCGCCTGTATCGCCTGCAGCCC
TCGGCCGAAGGCTCCGACCAGCCCTGGCAGGCCGAGGCCGAGAGTTTCATCGCTCCGACCCCGCCGGACAGC
GGGTTGCCCTGGGGCATGAGCACGCGGGTCTGGCTCAGTGGCCTGGTGCGCGGCGGCAACCTCGACTTCGAA
GGCATCGCCTGCGATGCCGCCGGCAATCGCTACCTGGTCAGCGAGGCGCACGCGGCGGTCCTGCAACTGCCG
GTGAGCGGCGCGCCGAACTGGCTGCGCCTGCCGCCCGGCCTGCTGCCGCAAGCGCGGGCCAGCGGCATGCTG
ATGAATTTCAACGCGTTGTTCGAAGGGATCGCCGTCGACCCCGAGGGCAAGCGCCTCTGGCTGGCTGCCGAG
CGCGAGCGCCGCGGCCTGCTGGTGGCCCACCGCGACAACAGTGCCTGGCGCTGCGAGGGCAGCTGCGTACTG
CTCGCCGAGGGCGGCAAGATCGAGCCGCCGCCGGAACTGGGCAGCGCGCGCAAGCTGCCGAAGGATTTCTCC
GACCTCGCCTTCTACCGCGGCAAGCTGTTCACCCTGGAGCGCCTGGCGCATCAGATCTGCCGCCGCGACCTG
GCCCAGGCCAAGGTCGAGCGCTGCTGGTCGTTCGCCTCGGCGGTCCTGGCGCCGGAGCGTCGCTACGAGCTG
CCTTATGGCGTCGCGGAAGCCCTGTCGCTGGACGACAAGGGCGCCTGGCTGGGCATCGACAATGGCGACCAT
GCGCGCGCCGATGGCGACGTGCGGCCCTTCGTCCTGCGCTTCGCCGCGCCCGCCGGCGGCTGGTTGGGGGAC
AAGTGA