ViewGene
Locus Name:
GeneID:
Location:

GeneID:1918
TrivialName: PA14_14340
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_14340
PAO1 Ortholog Locus:PA3840
Sequence Length:1011
Protein Length:336
Start: 1224022
Stop: 1223012
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07227.1|AE004801_5 (AE004801) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 336/336 (100%), Positives = 336/336 (100%)
Sequence:
ATGCCCCGCCCGACCAGCCCGCATCCCGACGCCGAGCGCAAGAGCGCCAGCCCGCTGCACCCGCGCAATCGC
CACCTGGGACGCTACGACTTTCCGCGCCTGATCGCCGGCAGCCCGGAACTGGAGCGCTTCGTCATCCTCAAT
CCGTACGGCAGGCAGAGCATCGACTTCGCTGATCCGGCGGCGGTGAAAGCCTTCAACCGCGCGCTGCTGCAA
CAGTTCTACGACGTACGCGAGTGGGATATACCCGATGGTTACCTGTGCCCGCCCATTCCCGGTCGCGCCGAC
TACCTGCACTACCTGGCCGACCTGCTCGGCGCCAGCCACGATGGCCTGATTCCACGCGGTCCCGGCCTGCGT
GCGCTGGACGTCGGAACCGGAGCCAACTGCATCTACCCGCTGCTCGGCCACCACGAATACGGCTGGCGCTTC
GTGGGCGCCGACATCGACCCGCAATCGCTGGCCTCGGCCGCTGCGATCCTCGCCGCCAACCCACGCTTCGCC
GCTGCCATCGAGTTGCGCCGACAGCCTGATCGCAGGCAGATATTCCAGGGCCTGATCGGCGTCGACGAGCGC
TTCGACATGACCCTCTGCAACCCGCCCTTCCACGCCTCGCTGGACGAAGCCACGCGCGGCAGCCGGCGCAAG
TGGAAGAACCTCGGCAAGCTCGACCCGACCCGCACCCTGCCGCTACTGAACTTCGGCGGCCAGGGCGCCGAG
CTGTACTGCGAGGGCGGCGAAGCGGCCTTCCTGGCCGGCATGGCCGAGGAAAGCCGGGCGTTCGCCACGCAG
GTGTTCTGGTTCACCACCCTGGTATCCAAGGCGAGCAACCTGCCGAACCTCCAGGAGCGCCTGAAGACGCTG
GGCGCCAGCGATATCCGCGTGGTGGACATGGCCCAGGGACAGAAGCAGAGTCGCTTCGTCGCCTGGACCTAC
CTCGACAAGAAGCAGCGCCGGGCCTGGCGCAAGGAGCGCTGGACAGCAGCCCTCCTGGAACCACTGGGCGAA
TAG
Translation:
MPRPTSPHPDAERKSASPLHPRNRHLGRYDFPRLIAGSPELERFVILNPYGRQSIDFADPAAVKAFNRALLQ
QFYDVREWDIPDGYLCPPIPGRADYLHYLADLLGASHDGLIPRGPGLRALDVGTGANCIYPLLGHHEYGWRF
VGADIDPQSLASAAAILAANPRFAAAIELRRQPDRRQIFQGLIGVDERFDMTLCNPPFHASLDEATRGSRRK
WKNLGKLDPTRTLPLLNFGGQGAELYCEGGEAAFLAGMAEESRAFATQVFWFTTLVSKASNLPNLQERLKTL
GASDIRVVDMAQGQKQSRFVAWTYLDKKQRRAWRKERWTAALLEPLGE*
AnnotationID:1927GeneID:1918
AnnotatorUID: danlee
Modification Date/Time: 2005-10-19 12:12:13
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA3840, ybiN
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam05971, COG3129
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gi|67153802|ref|ZP_00415547.1|  Protein of unknown function DUF890 [Azotobacter vinelandii AvOP]
gi|67087935|gb|EAM07401.1|  Protein of unknown function DUF890 [Azotobacter vinelandii AvOP]
     Length=349
     Score =  467 bits (1201),  Expect = 3e-130
     Identities = 227/322 (70%), Positives = 254/322 (78%), Gaps = 5/322 (1%)

gi|70728444|ref|YP_258193.1|  hypothetical protein PFL_1062 [Pseudomonas fluorescens Pf-5]
gi|68342743|gb|AAY90349.1|  conserved hypothetical protein [Pseudomonas fluorescens Pf-5]
     Length=374
     Score =  428 bits (1100),  Expect = 2e-118
     Identities = 200/325 (61%), Positives = 252/325 (77%), Gaps = 1/325 (0%)








 
Structural Features:
pfam05971, DUF890, Protein of unknown function (DUF890). This family consists of several conserved 
hypothetical proteins from both eukaryotes and prokaryotes. The function of this family is unknown.
             CD-Length = 298 residues, 100.0% aligned
             Score =  463 bits (1192), Expect = 1e-131

COG3129, Predicted SAM-dependent methyltransferase [General function prediction only].
             CD-Length = 292 residues, 100.0% aligned
             Score =  458 bits (1180), Expect = 4e-130






   
Genomic Context:






   
Comment:


















    ReferenceID:3839




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20986




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1918
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3373
                           PA3840_tr
                           translation of PA3840
                           336
                           99.99
                           99.99
                           0
                           1791.0
     

     
     
104401
                           gb|AAG07227.1|AE004801_5
                           (AE004801) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           336
                           99.99
                           99.99
                           0
                           1791.0
     

     
     
104403
                           gb|AAN66601.1|AE016287_12
                           (AE016777) conserved hypothetical protein [Pseudomonas putida KT2440]
                           336
                           57.44
                           69.94
                           19
                           1024.0
     

     
     
104402
                           gb|AAO54792.1|
                           (AE016860) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           357
                           56.30
                           68.34
                           37
                           1080.0
     

     
     
104416
                           gb|AAL19762.1|
                           (AE008734) putative SAM-dependent methyltransferase [Salmonella typhimurium LT2]
                           341
                           51.02
                           61.58
                           38
                           853.0
     

     






      

          
GC ORFID: 44920How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3840Glimmer Score: 

          
Start: 3729916Stop: 3730926

          
Length: 1011


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA3840 translation of PA3840Homolog Bit Score 694.0

          
Other Homologs:  psyr_15may02_Scaffold3_revised_gene4975 (ORF: BLASTX 417.0), t_PA3840 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCCCGCCCGACCAGCCCGCATCCCGACGCCGAGCGCAAGAGCGCCAGCCCGCTGCACCCGCGCAATCGC 
CACCTGGGACGCTACGACTTTCCGCGCCTGATCGCCGGCAGCCCGGAACTGGAGCGCTTCGTCATCCTCAAT 
CCGTACGGCAGGCAGAGCATCGACTTCGCTGATCCGGCGGCGGTGAAAGCCTTCAACCGCGCGCTGCTGCAA 
CAGTTCTACGACGTACGCGAGTGGGATATACCCGATGGTTACCTGTGCCCGCCCATTCCCGGTCGCGCCGAC 
TACCTGCACTACCTGGCCGACCTGCTCGGCGCCAGCCACGATGGCCTGATTCCACGCGGTCCCGGCCTGCGT 
GCGCTGGACGTCGGAACCGGAGCCAACTGCATCTACCCGCTGCTCGGCCACCACGAATACGGCTGGCGCTTC 
GTGGGCGCCGACATCGACCCGCAATCGCTGGCCTCGGCCGCTGCGATCCTCGCCGCCAACCCACGCTTCGCC 
GCTGCCATCGAGTTGCGCCGACAGCCTGATCGCAGGCAGATATTCCAGGGCCTGATCGGCGTCGACGAGCGC 
TTCGACATGACCCTCTGCAACCCGCCCTTCCACGCCTCGCTGGACGAAGCCACGCGCGGCAGCCGGCGCAAG 
TGGAAGAACCTCGGCAAGCTCGACCCGACCCGCACCCTGCCGCTACTGAACTTCGGCGGCCAGGGCGCCGAG 
CTGTACTGCGAGGGCGGCGAAGCGGCCTTCCTGGCCGGCATGGCCGAGGAAAGCCGGGCGTTCGCCACGCAG 
GTGTTCTGGTTCACCACCCTGGTATCCAAGGCGAGCAACCTGCCGAACCTCCAGGAGCGCCTGAAGACGCTG 
GGCGCCAGCGATATCCGCGTGGTGGACATGGCCCAGGGACAGAAGCAGAGTCGCTTCGTCGCCTGGACCTAC 
CTCGACAAGAAGCAGCGCCGGGCCTGGCGCAAGGAGCGCTGGACAGCAGCCCTCCTGGAACCACTGGGCGAA 
TAG