ViewGene
Locus Name:
GeneID:
Location:

GeneID:1916
TrivialName: PA14_57600
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_57600
PAO1 Ortholog Locus:PA4434
Sequence Length:1038
Protein Length:345
Start: 5129748
Stop: 5130785
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07822.1|AE004857_13 (AE004857) probable oxidoreductase [Pseudomonas aeruginosa PAO1]
Identities = 343/345 (99%), Positives = 343/345 (99%)
Sequence:
ATGGAGTATCGCCCGCTCGGCCGCACCGATCTGAAAGTCAGCGCCCTCTGCCTCGGCACCATGACCTGGGGC
GAGCAGAACAGCGAGCAGGACGCCTTCGCCCAGATCGCCAGGGCCAAGGCCGCCGGGATCAATTTCATGGAT
ACCGCCGAAATGTATCCGGTGCCGCCCCGCGCCGAGACCTACGCCAGCACCGAGCGCATCATCGGCAACTGG
TTCCGCCGCAGCGGCGACCGCGCCGACTGGATCCTCGCCAGCAAGATCGCCGGCCCCGGCAACGGCATCAGC
CATGTGCGCGACGGCAACCTCAAGTTCAACCGCCAGCACATCGTCGCCGCCCTCGATGCCAGCCTGGAGCGC
CTGCAGACAGACTGGCTGGATCTCTACCAGTTGCACTGGCCGGAGCGGCGGACCAACTTCTTCGGCCAGCTC
GGCTACCAGCACCAGGAAGAGAGCTTCACACCGCTGGAGGAAACCCTGGAAGTGCTCGACGAACAGGCGCGC
GCCGGCAAGATCCGCCACATCGGCCTGTCCAACGAGACGCCCTGGGGCACCATGACCTTCCTCAGGCTCGCC
GAGGAGCGCGGCTGGCCGCGCGCGGTATCGATCCAGAACCCCTACAACCTGCTCAACCGCAGCTTCGAGGTG
GGCCTGGCGGAAATCGCCATCCGCGAGCAGTGCGGCCTGTTGGCCTACTCGCCGATGGCCTTCGGCATGCTT
TCCGGCAAGTACGCGGACGGCGCCCGCCCGGCCAACGCGCGCATCAGTCTCTACAGCCGCTTCACCCGCTAC
ACCAACCCGCAGGCGGAAGCGGCCTGCGCGCGCTACGTGGCGCTGGCCCGCGAACATGGACTGGAACCGGCG
CAGATGGCACTGGCCTACGTCACTTCGCGGCCGTTCGTGACCAGCAACATCATCGGCGCGACCTCGCTGGAA
CAGCTGGAAGCCAATCTCGGTAGCGTCGACCTCAGGCTGGACGAGGAGGTGCTCGCCGGTATCGATGCGATC
CACCGGGAGCAACCGAACCCGGCTCCCTGA
Translation:
MEYRPLGRTDLKVSALCLGTMTWGEQNSEQDAFAQIARAKAAGINFMDTAEMYPVPPRAETYASTERIIGNW
FRRSGDRADWILASKIAGPGNGISHVRDGNLKFNRQHIVAALDASLERLQTDWLDLYQLHWPERRTNFFGQL
GYQHQEESFTPLEETLEVLDEQARAGKIRHIGLSNETPWGTMTFLRLAEERGWPRAVSIQNPYNLLNRSFEV
GLAEIAIREQCGLLAYSPMAFGMLSGKYADGARPANARISLYSRFTRYTNPQAEAACARYVALAREHGLEPA
QMALAYVTSRPFVTSNIIGATSLEQLEANLGSVDLRLDEEVLAGIDAIHREQPNPAP*
AnnotationID:1925GeneID:1916
AnnotatorUID: diggins
Modification Date/Time: 2005-05-02 20:08:37
Gene Name:
Confidence Code:3
GeneProduct:putative oxidoreductase, aldo/keto reductase famil
Cell Localization:()
Synonyms:PA4434
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0667,KOG1575
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN66938.1|AE016322_5 (AE016778) oxidoreductase, aldo/keto reductase family [Pseudomonas
           putida KT2440]
          Length = 346

 Score =  576 bits (1484), Expect = e-164
 Identities = 277/346 (80%), Positives = 312/346 (90%), Gaps = 1/346 (0%)

>gb|AAO55998.1| (AE016864) oxidoreductase, aldo/keto reductase family [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 345

 Score =  490 bits (1262), Expect = e-138
 Identities = 235/346 (67%), Positives = 286/346 (82%), Gaps = 2/346 (0%)

>emb|CAC89639.1| (AJ414144) putative aldo/keto reductase-family protein [Yersinia
           pestis CO92]
          Length = 346

 Score =  395 bits (1016), Expect = e-109
 Identities = 202/346 (58%), Positives = 257/346 (74%), Gaps = 1/346 (0%)






 
Structural Features:
COG0667, Tas, Predicted oxidoreductases 
(related to aryl-alcohol dehydrogenases) 
[Energy production and conversion]
CD-Length = 316 residues, 100.0% aligned
Score =  300 bits (769), Expect = 4e-82
Identities = 143/348 (41%), Positives = 189/348 (54%), Gaps = 35/348 (10%)

KOG1575, Voltage-gated shaker-like K+ channel, subunit beta/KCNAB 
[Energy production and conversion]
CD-Length = 336 residues,  95.5% aligned
Score =  217 bits (553), Expect = 4e-57
Identities = 107/353 (30%), Positives = 166/353 (47%), Gaps = 40/353 (11%)






   
Genomic Context:






   
Comment:


















    ReferenceID:3835




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20982




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31473




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1916_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1916
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3370
                           PA4434_tr
                           translation of PA4434
                           345
                           99.42
                           99.42
                           0
                           1793.0
     

     
     
104333
                           gb|AAG07822.1|AE004857_13
                           (AE004857) probable oxidoreductase [Pseudomonas aeruginosa PAO1]
                           345
                           99.42
                           99.42
                           0
                           1793.0
     

     
     
104334
                           gb|AAN66938.1|AE016322_5
                           (AE016778) oxidoreductase, aldo/keto reductase family [Pseudomonas putida KT2440]
                           346
                           80.05
                           90.17
                           1
                           1486.0
     

     
     
104335
                           gb|AAO55998.1|
                           (AE016864) oxidoreductase, aldo/keto reductase family [Pseudomonas syringae pv. tomato str. DC3000]
                           346
                           67.91
                           82.65
                           2
                           1266.0
     

     
     
104336
                           emb|CAE41279.1|
                           (BX640413) probable oxidoreductase [Bordetella pertussis] [Bordetella pertussis Tohama I]
                           349
                           61.31
                           76.21
                           4
                           1114.0
     

     






      

          
GC ORFID: 44918How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4434Glimmer Score: 

          
Start: 4393427Stop: 4394464

          
Length: 1038


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4434 translation of PA4434Homolog Bit Score 695.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene1263 (ORF: BLASTX 499.0), t_PA4434 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGAGTATCGCCCGCTCGGCCGCACCGATCTGAAAGTCAGCGCCCTCTGCCTCGGCACCATGACCTGGGGC 
GAGCAGAACAGCGAGCAGGACGCCTTCGCCCAGATCGCCAGGGCCAAGGCCGCCGGGATCAATTTCATGGAT 
ACCGCCGAAATGTATCCGGTGCCGCCCCGCGCCGAGACCTACGCCAGCACCGAGCGCATCATCGGCAACTGG 
TTCCGCCGCAGCGGCGACCGCGCCGACTGGATCCTCGCCAGCAAGATCGCCGGCCCCGGCAACGGCATCAGC 
CATGTGCGCGACGGCAACCTCAAGTTCAACCGCCAGCACATCGTCGCCGCCCTCGATGCCAGCCTGGAGCGC 
CTGCAGACAGACTGGCTGGATCTCTACCAGTTGCACTGGCCGGAGCGGCGGACCAACTTCTTCGGCCAGCTC 
GGCTACCAGCACCAGGAAGAGAGCTTCACACCGCTGGAGGAAACCCTGGAAGTGCTCGACGAACAGGCGCGC 
GCCGGCAAGATCCGCCACATCGGCCTGTCCAACGAGACGCCCTGGGGCACCATGACCTTCCTCAGGCTCGCC 
GAGGAGCGCGGCTGGCCGCGCGCGGTATCGATCCAGAACCCCTACAACCTGCTCAACCGCAGCTTCGAGGTG 
GGCCTGGCGGAAATCGCCATCCGCGAGCAGTGCGGCCTGTTGGCCTACTCGCCGATGGCCTTCGGCATGCTT 
TCCGGCAAGTACGCGGACGGCGCCCGCCCGGCCAACGCGCGCATCAGTCTCTACAGCCGCTTCACCCGCTAC 
ACCAACCCGCAGGCGGAAGCGGCCTGCGCGCGCTACGTGGCGCTGGCCCGCGAACATGGACTGGAACCGGCG 
CAGATGGCACTGGCCTACGTCACTTCGCGGCCGTTCGTGACCAGCAACATCATCGGCGCGACCTCGCTGGAA 
CAGCTGGAAGCCAATCTCGGTAGCGTCGACCTCAGGCTGGACGAGGAGGTGCTCGCCGGTATCGATGCGATC 
CACCGGGAGCAACCGAACCCGGCTCCCTGA