ViewGene
Locus Name:
GeneID:
Location:

GeneID:1915
TrivialName: PA14_24920
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_24920
PAO1 Ortholog Locus:PA3027
Sequence Length:1032
Protein Length:343
Start: 2178148
Stop: 2177117
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06415.1|AE004728_1 (AE004728) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 341/343 (99%), Positives = 341/343 (99%)
Sequence:
ATGCAGACCCTTGGCTCCACCTCGGTTCCGGCCCTGCTGAAGTACCTGCGCCACGCCGAACGGCTCGGCCTG
GACATCGCCCCTGCCCTGGCCGCCGCCGGCCTCCAGGCCGACCAGCTCAACGACAATCGCCAGCGCCTGCCG
GGCGAAGCCCACGAGCGCCTGCTCGGCTATTTCTGCGAGCATTCCGGTGATCCCCTGTTCGGCCTGCATTCG
GCGCGCTTCGTCCAGCCCGGCTCCTGGAGCGTGCTCGGCTACATCGCGATGAACTGCGCCACCCTGGGCGAG
GCCATGAGCCGCATCACGCCCTACGAGAAGCTGGTCGGCGACATGGGCACCAGCCGCATCGAGGCGGCCGGC
GGGCAGGTCCGGCTGATCTGGAACTGCCGCCACCAGACACCCCTGGTACGGCGCCACATGGTCGAGCACGTC
CTGGCTTCCTGGGTCCTCTACGCGCGCTGGATCGCCGACCTGGAAGGTTCGCCGGACGAGGTCTGGCTGGAA
CACGACCTGCCGGACGGAACCCGCGTGGAAGACTACGAGACCTTCTTCGGCTGTCCGGTGCGCTTCACCCAA
CCCTGTTCGGCGCTGCTGGTACCACTGGACTACCTGGCGCTGCCGCTGCGCCAGGCCGACGCGACGCTGCTG
CGCACCCTGGAAGAACATGCCCTGGCGCTGATGGCCGAGCTGGACGATGACGAGCCGCTGCCGCTGCGGGTG
AAGAACGCCCTGCGCCAGCTACTCAAGGACGGCCTGCCGCGCAAGGAACGGGTGGCGGAGAAGTTCGGCATG
ACCGTACGCACCCTGCAACGCCACCTGCAGCAAGCCGGCAGCAGCTACCAGCAGACCCTCGACGAACTGCGC
CGCGAACTGGCCGAGCACTACCTGCTGCATAGCGAGCTGCCGATCCAGGACATCGCCCAGTACCTGGGCTTC
ACCGAGTCCCGCTCGTTCCATCGCAGTTTCAAGGGCTGGACCGGGCAGACGCCCGGCGAGTACCGGCAACGG
CGGAAGGAGCCGGCGGCGCAATGA
Translation:
MQTLGSTSVPALLKYLRHAERLGLDIAPALAAAGLQADQLNDNRQRLPGEAHERLLGYFCEHSGDPLFGLHS
ARFVQPGSWSVLGYIAMNCATLGEAMSRITPYEKLVGDMGTSRIEAAGGQVRLIWNCRHQTPLVRRHMVEHV
LASWVLYARWIADLEGSPDEVWLEHDLPDGTRVEDYETFFGCPVRFTQPCSALLVPLDYLALPLRQADATLL
RTLEEHALALMAELDDDEPLPLRVKNALRQLLKDGLPRKERVAEKFGMTVRTLQRHLQQAGSSYQQTLDELR
RELAEHYLLHSELPIQDIAQYLGFTESRSFHRSFKGWTGQTPGEYRQRRKEPAAQ*
AnnotationID:1924GeneID:1915
AnnotatorUID: diggins
Modification Date/Time: 2004-11-25 08:08:07
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:smart00342
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein






   
Genomic Context:






   
Comment:


















    ReferenceID:3833




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20980




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36021




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1915_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1915
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3369
                           PA3027_tr
                           translation of PA3027
                           343
                           99.41
                           99.41
                           0
                           1793.0
     

     
     
104332
                           gb|AAG06415.1|AE004728_1
                           (AE004728) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           343
                           99.41
                           99.41
                           0
                           1793.0
     

     






      

          
GC ORFID: 44917How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3027Glimmer Score: 

          
Start: 2775780Stop: 2776811

          
Length: 1032


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3027 translation of PA3027Homolog Bit Score 695.0

          
Other Homologs:  t_PA3027 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCAGACCCTTGGCTCCACCTCGGTTCCGGCCCTGCTGAAGTACCTGCGCCACGCCGAACGGCTCGGCCTG 
GACATCGCCCCTGCCCTGGCCGCCGCCGGCCTCCAGGCCGACCAGCTCAACGACAATCGCCAGCGCCTGCCG 
GGCGAAGCCCACGAGCGCCTGCTCGGCTATTTCTGCGAGCATTCCGGTGATCCCCTGTTCGGCCTGCATTCG 
GCGCGCTTCGTCCAGCCCGGCTCCTGGAGCGTGCTCGGCTACATCGCGATGAACTGCGCCACCCTGGGCGAG 
GCCATGAGCCGCATCACGCCCTACGAGAAGCTGGTCGGCGACATGGGCACCAGCCGCATCGAGGCGGCCGGC 
GGGCAGGTCCGGCTGATCTGGAACTGCCGCCACCAGACACCCCTGGTACGGCGCCACATGGTCGAGCACGTC 
CTGGCTTCCTGGGTCCTCTACGCGCGCTGGATCGCCGACCTGGAAGGTTCGCCGGACGAGGTCTGGCTGGAA 
CACGACCTGCCGGACGGAACCCGCGTGGAAGACTACGAGACCTTCTTCGGCTGTCCGGTGCGCTTCACCCAA 
CCCTGTTCGGCGCTGCTGGTACCACTGGACTACCTGGCGCTGCCGCTGCGCCAGGCCGACGCGACGCTGCTG 
CGCACCCTGGAAGAACATGCCCTGGCGCTGATGGCCGAGCTGGACGATGACGAGCCGCTGCCGCTGCGGGTG 
AAGAACGCCCTGCGCCAGCTACTCAAGGACGGCCTGCCGCGCAAGGAACGGGTGGCGGAGAAGTTCGGCATG 
ACCGTACGCACCCTGCAACGCCACCTGCAGCAAGCCGGCAGCAGCTACCAGCAGACCCTCGACGAACTGCGC 
CGCGAACTGGCCGAGCACTACCTGCTGCATAGCGAGCTGCCGATCCAGGACATCGCCCAGTACCTGGGCTTC 
ACCGAGTCCCGCTCGTTCCATCGCAGTTTCAAGGGCTGGACCGGGCAGACGCCCGGCGAGTACCGGCAACGG 
CGGAAGGAGCCGGCGGCGCAATGA