ViewGene
Locus Name:
GeneID:
Location:

GeneID:1914
TrivialName: PA14_25730
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_25730
PAO1 Ortholog Locus:PA2963
Sequence Length:1050
Protein Length:349
Start: 2246591
Stop: 2247640
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06351.1|AE004722_7 (AE004722) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 346/349 (99%), Positives = 347/349 (99%)
Sequence:
ATGCGCAAACTGCTGGTGCTGCTGGAGAGTGGCCTGTTGTTCGTTGGCCTCTGCGTCGGCCTGGCTGCATGG
CAGCAGCAGCGGGCGCTGGAGCAGCCCCTGCAATTGACCGAGGAGCGCCTGCTGGACGTTTCCTCGGGCTCC
ACGCCGGGCGGCATGCTCGCGCGTCTGGAGCAGGAAGAGGTGCTCCATGGCGCGTTCTGGCTGCGCCTCTAC
TGGCGTTTCAACCTGCCGGGCCAGGCCCTGCACAGCGGTGAATACCGCCTCTTGCCGGGGATGACGGGCGCC
GACCTGCTGGAACTCTGGCGTGAAGGCGAGGTGGTGCAGTACAGCCTGACCCTGGTCGAGGGCTGGAGTTTC
CGCCAGGTGCGCGAAGCGCTCGCCAGGCAGGGCAAGCTGGAGCAGACCCTGGCCGGCCTGAGCGACGGCGAG
ATCATGCAACGCCTCGGCAAGCCCGACGAAGTGGCCGAAGGGCGCTTCTTCCCCGATACCTACCGCTACACC
CGTGGCATGCGCGACATCGACATACTGCGCAAGGCCTACCAGCGGATGCAGAACATCCTCGCCAAGGAATGG
GATGGCCGCAGCCAGGACCTGCCTTATCGCGACGCCTACCAGGCGCTGATCATGGCCTCGTTGGTGGAAAAG
GAAACCGGCGTGCCGGAAGAGCGTTCGCAGATCGCCGGCGTCTTCGTCCGCCGCCTGCAGCGCGGCATGCTG
TTGCAGACCGATCCGACGGTGATCTATGGCATGGGCGAGCGCTACAACGGCAAGATCACCCGCGCCGACCTG
CGCGAACCGACCCCTTACAATACCTATGTGGTGCCGGGCATGCCGCCGACCCCGATCGCCCTGGCCGGGCGC
GAGGCTATTCGCGCCGCGCTGCATCCGGCCGAGGGCGAGACCCTGTATTTCGTGGCGCGCGGCGATGGCAGC
CACGTGTTCTCCAGCAGCCTGGACGAACACAACAAGGCGGTCCGCGAGTATCAGTTGAAGCGTCGCTCGGAC
TATCGCTCCAGCCCCGCGCCCATCACCCCGCCGCCACAATGA
Translation:
MRKLLVLLESGLLFVGLCVGLAAWQQQRALEQPLQLTEERLLDVSSGSTPGGMLARLEQEEVLHGAFWLRLY
WRFNLPGQALHSGEYRLLPGMTGADLLELWREGEVVQYSLTLVEGWSFRQVREALARQGKLEQTLAGLSDGE
IMQRLGKPDEVAEGRFFPDTYRYTRGMRDIDILRKAYQRMQNILAKEWDGRSQDLPYRDAYQALIMASLVEK
ETGVPEERSQIAGVFVRRLQRGMLLQTDPTVIYGMGERYNGKITRADLREPTPYNTYVVPGMPPTPIALAGR
EAIRAALHPAEGETLYFVARGDGSHVFSSSLDEHNKAVREYQLKRRSDYRSSPAPITPPPQ*
AnnotationID:1923GeneID:1914
AnnotatorUID: diggins
Modification Date/Time: 2005-05-09 13:01:45
Gene Name:
Confidence Code:3
GeneProduct:putative aminodeoxychorismate lyase
Cell Localization:()
Synonyms:PA2963
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam02618
Secondary Functional Category(ies):biosynthesis of cofactors, prosthetic groups and carriers
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAM85331.1|AE013779_5 (AE013779) putative thymidylate kinase [Yersinia pestis KIM]
          Length = 363

 Score =  262 bits (669), Expect = 3e-69
 Identities = 139/323 (43%), Positives = 195/323 (60%), Gaps = 4/323 (1%)

>emb|CAC90426.1| (AJ414149) putative exported protein [Yersinia pestis CO92]
          Length = 341

 Score =  262 bits (669), Expect = 3e-69
 Identities = 139/323 (43%), Positives = 195/323 (60%), Gaps = 4/323 (1%)








 
Structural Features:
pfam02618, ADC_lyase, Aminodeoxychorismate lyase.
CD-Length = 299 residues,  99.7% aligned
Score =  363 bits (932), Expect = 3e-101
Identities = 135/298 (45%), Positives = 199/298 (66%), Gaps = 6/298 (2%)






   
Genomic Context:






   
Comment:


















    ReferenceID:3831




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20978




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36064




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1914_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1914
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3368
                           PA2963_tr
                           translation of PA2963
                           349
                           99.14
                           99.42
                           0
                           1794.0
     

     
     
104302
                           gb|AAG06351.1|AE004722_7
                           (AE004722) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           349
                           99.14
                           99.42
                           0
                           1794.0
     

     
     
104303
                           gb|AAO57296.1|
                           (AE016869) conserved hypothetical protein TIGR00247 [Pseudomonas syringae pv. tomato str. DC3000]
                           379
                           62.79
                           75.19
                           30
                           1282.0
     

     
     
104304
                           gb|AAN67536.1|AE016382_4
                           (AE016781) conserved hypothetical protein TIGR00247 [Pseudomonas putida KT2440]
                           426
                           53.99
                           64.78
                           82
                           1239.0
     

     
     
104305
                           gb|AAG42373.1|AF294440_5
                           (AF294440) ORF340 [Xanthomonas albilineans]
                           370
                           45.94
                           59.18
                           32
                           746.0
     

     






      

          
GC ORFID: 44916How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2963Glimmer Score: 

          
Start: 2707334Stop: 2706285

          
Length: 1050


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2963 translation of PA2963Homolog Bit Score 695.0

          
Other Homologs:  t_PA2963 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGCAAACTGCTGGTGCTGCTGGAGAGTGGCCTGTTGTTCGTTGGCCTCTGCGTCGGCCTGGCTGCATGG 
CAGCAGCAGCGGGCGCTGGAGCAGCCCCTGCAATTGACCGAGGAGCGCCTGCTGGACGTTTCCTCGGGCTCC 
ACGCCGGGCGGCATGCTCGCGCGTCTGGAGCAGGAAGAGGTGCTCCATGGCGCGTTCTGGCTGCGCCTCTAC 
TGGCGTTTCAACCTGCCGGGCCAGGCCCTGCACAGCGGTGAATACCGCCTCTTGCCGGGGATGACGGGCGCC 
GACCTGCTGGAACTCTGGCGTGAAGGCGAGGTGGTGCAGTACAGCCTGACCCTGGTCGAGGGCTGGAGTTTC 
CGCCAGGTGCGCGAAGCGCTCGCCAGGCAGGGCAAGCTGGAGCAGACCCTGGCCGGCCTGAGCGACGGCGAG 
ATCATGCAACGCCTCGGCAAGCCCGACGAAGTGGCCGAAGGGCGCTTCTTCCCCGATACCTACCGCTACACC 
CGTGGCATGCGCGACATCGACATACTGCGCAAGGCCTACCAGCGGATGCAGAACATCCTCGCCAAGGAATGG 
GATGGCCGCAGCCAGGACCTGCCTTATCGCGACGCCTACCAGGCGCTGATCATGGCCTCGTTGGTGGAAAAG 
GAAACCGGCGTGCCGGAAGAGCGTTCGCAGATCGCCGGCGTCTTCGTCCGCCGCCTGCAGCGCGGCATGCTG 
TTGCAGACCGATCCGACGGTGATCTATGGCATGGGCGAGCGCTACAACGGCAAGATCACCCGCGCCGACCTG 
CGCGAACCGACCCCTTACAATACCTATGTGGTGCCGGGCATGCCGCCGACCCCGATCGCCCTGGCCGGGCGC 
GAGGCTATTCGCGCCGCGCTGCATCCGGCCGAGGGCGAGACCCTGTATTTCGTGGCGCGCGGCGATGGCAGC 
CACGTGTTCTCCAGCAGCCTGGACGAACACAACAAGGCGGTCCGCGAGTATCAGTTGAAGCGTCGCTCGGAC 
TATCGCTCCAGCCCCGCGCCCATCACCCCGCCGCCACAATGA