ViewGene

Locus Name:
GeneID:
Location:

GeneID: 1912

TrivialName: PA14_08450

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_08450

PAO1 Ortholog Locus: PA0659

Sequence Length: 1083

Protein Length: 360

Start: 724147

Stop: 723065

Strand: -

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG04048.1|AE004500_14 (AE004500) hypothetical protein [Pseudomonas aeruginosa PAO1] Identities = 353/360 (98%), Positives = 356/360 (98%), Gaps = 2/360 (0%)

Sequence:

ATGACCGACCAACGCTTCAAGATCGTCTTCTCCGGCGAGCTGATGCCCGACGCATCGCTCGAAACCGTGAAG
GACAATCTCGCCCGCCTGTTCAAGAGCGAACCGGGCAAGATCGACGCCCTCTTCGGCGGTCGCCCGGTGGTG
CTGAAACGCGAACTTCCAGAGGCCGAGGCGGAGCGTTACCTGACCGCCCTGCGCCAGGCCGGCGCCAATGCC
TACAAGGAAGTCGACCTGGCGGCCAGCCTGAGCCTGGTGGAAACGCCCGATCACAACCCCCAGGTCGCGGAA
GAAACCCCAGCGCAACACCTGCCTCCCATGACCTGCCCGAAATGCGGCCATGAACAGCCCAGCGGAGCGGAA
TGTTCGGCTTGCGGCATCATCATCGAGAAGTACCTGGCGCGCCAGGCGCAGCTCGGCGAAAACGCCGCGCCT
GCGGCCTCCGCGGCCGCGGGCGCGGGCGCGTCTCCCTACACACCACCCAGCGCCCAGGTCGGCGAAGCCCTC
CCCGAGTTCGGCGAGCTGAACGTGTTCACCACCAACGGCCGGATCGGACGCCTGCGCTATCTCGGCTGGTCG
ATGGCGATGACGCTGTGCTTCCTCGTCATCATGGGCCTGGGCTTCCTGCTCGGCGAAACCGTCGGCGTGGCC
GTCACCGCCCTGGCCTCGATCGCCTTCATCGTCATTGCCGTGATGATCGGCGTGCAGCGCCTGCATGACCTC
GGCTGGTCGGGCTGGCTCTGGCTGCTCAACTTCGTCCCCTTCGTCGGCAGCGTGTTCGGCATCCTGATGCTG
GTCCTGCCCGGCAGCACCGGCGCCAACCGCTACGGTCCGCCGCCGCCGGCGAACAGCACCGGGGTGAAAGTC
CTGGCCAGTCTGATCATCCTGCTGCCGATAGTCGGTATCATCGCCGCCATCGCCCTGCCGTCCTACCAGGGT
TACCTGGAGCGCGCGAACTATGACGGCGGCGCCAGCGCTCCAGCCGACCCGTACACCACGGACGAGCAGGCC
GCCGCAGCGGCGGCCGAAGCCGATGAAGCCGCCACGGCGGCGGCAGAGGCCATGGAAGACGACGACCAACAG
TAG

Translation:

MTDQRFKIVFSGELMPDASLETVKDNLARLFKSEPGKIDALFGGRPVVLKRELPEAEAERYLTALRQAGANA
YKEVDLAASLSLVETPDHNPQVAEETPAQHLPPMTCPKCGHEQPSGAECSACGIIIEKYLARQAQLGENAAP
AASAAAGAGASPYTPPSAQVGEALPEFGELNVFTTNGRIGRLRYLGWSMAMTLCFLVIMGLGFLLGETVGVA
VTALASIAFIVIAVMIGVQRLHDLGWSGWLWLLNFVPFVGSVFGILMLVLPGSTGANRYGPPPPANSTGVKV
LASLIILLPIVGIIAAIALPSYQGYLERANYDGGASAPADPYTTDEQAAAAAAEADEAATAAAEAMEDDDQQ
*

AnnotationID:1921 GeneID:1912

AnnotatorUID: diggins

Modification Date/Time: 2005-03-29 18:06:57

Gene Name:

Confidence Code: 3

GeneProduct: putative membrane protein

Cell Localization: ()

Synonyms: PA0659

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (15) Membrane proteins

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs: COG3152

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

COG3152, Predicted membrane protein
CD-Length = 125 residues,  92.8% aligned
Score =  120 bits (303), Expect = 2e-28
Identities = 44/116 (37%), Positives = 64/116 (55%), Gaps = 5/116 (4%)

Genomic Context:

Comment:

ReferenceID:3827

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:20974

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:34603

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 1912_cdd.html

URL:

Homologs By Global Alignment

Gene ID:1912

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

3366 PA0659_tr translation of PA0659 360 98.05 98.88 2 1800.0

104263 gb|AAG04048.1|AE004500_14 (AE004500) hypothetical protein PA0659 [Pseudomonas aeruginosa PAO1] 360 98.05 98.88 2 1800.0

GC ORFID: `44914`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA0659`	Glimmer Score:
Start: `6525490`	Stop: `6524408`
Length: `1083`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TAG`	Truncated Stop:
Homolog: `t_PA0659 translation of PA0659`	Homolog Bit Score `697.0`
Other Homologs: `t_PA0659 (ORF: GLIMMER)`
GC ORF Sequence
ATGACCGACCAACGCTTCAAGATCGTCTTCTCCGGCGAGCTGATGCCCGACGCATCGCTCGAAACCGTGAAG GACAATCTCGCCCGCCTGTTCAAGAGCGAACCGGGCAAGATCGACGCCCTCTTCGGCGGTCGCCCGGTGGTG CTGAAACGCGAACTTCCAGAGGCCGAGGCGGAGCGTTACCTGACCGCCCTGCGCCAGGCCGGCGCCAATGCC TACAAGGAAGTCGACCTGGCGGCCAGCCTGAGCCTGGTGGAAACGCCCGATCACAACCCCCAGGTCGCGGAA GAAACCCCAGCGCAACACCTGCCTCCCATGACCTGCCCGAAATGCGGCCATGAACAGCCCAGCGGAGCGGAA TGTTCGGCTTGCGGCATCATCATCGAGAAGTACCTGGCGCGCCAGGCGCAGCTCGGCGAAAACGCCGCGCCT GCGGCCTCCGCGGCCGCGGGCGCGGGCGCGTCTCCCTACACACCACCCAGCGCCCAGGTCGGCGAAGCCCTC CCCGAGTTCGGCGAGCTGAACGTGTTCACCACCAACGGCCGGATCGGACGCCTGCGCTATCTCGGCTGGTCG ATGGCGATGACGCTGTGCTTCCTCGTCATCATGGGCCTGGGCTTCCTGCTCGGCGAAACCGTCGGCGTGGCC GTCACCGCCCTGGCCTCGATCGCCTTCATCGTCATTGCCGTGATGATCGGCGTGCAGCGCCTGCATGACCTC GGCTGGTCGGGCTGGCTCTGGCTGCTCAACTTCGTCCCCTTCGTCGGCAGCGTGTTCGGCATCCTGATGCTG GTCCTGCCCGGCAGCACCGGCGCCAACCGCTACGGTCCGCCGCCGCCGGCGAACAGCACCGGGGTGAAAGTC CTGGCCAGTCTGATCATCCTGCTGCCGATAGTCGGTATCATCGCCGCCATCGCCCTGCCGTCCTACCAGGGT TACCTGGAGCGCGCGAACTATGACGGCGGCGCCAGCGCTCCAGCCGACCCGTACACCACGGACGAGCAGGCC GCCGCAGCGGCGGCCGAAGCCGATGAAGCCGCCACGGCGGCGGCAGAGGCCATGGAAGACGACGACCAACAG TAG