ViewGene
Locus Name:
GeneID:
Location:

GeneID:1911
TrivialName: PA14_04030
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_04030
PAO1 Ortholog Locus:PA0308
Sequence Length:1020
Protein Length:339
Start: 363195
Stop: 364214
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03697.1|AE004469_2 (AE004469) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 339/339 (100%), Positives = 339/339 (100%)
Sequence:
ATGTGTTCGCGCGCAGCTGAATATCCCTGGGTTTCGCCCGTGGCCCGGCCACGAATAGATTGCAGCCCGGAA
CCGCCGATGTCAGAAGCCTTCAACCCCGATTACCTGCGCCAGCACCTGCGACCCTTGGCCGCGGCCGAGGCG
GACGCCGCCGTCCTCGCCTACCAGGCCTACTACGGCCTGGACCTGCGCTCCCGCCATCCGCGCCTGCAAGCG
CGGCTCGGCAGCATGGCGGTCGACGGGCGCCGCCTGGCGGTGCAGGCCTGGCTGCTGCCGGAGGCGCGCGGC
AGCCTGTTGCTGATGCATGGCTATTACGACCACATGGGACTGTATCGGCACGTGGTCGACTGGGCGCTGGGC
ATGGGCTTCTCGGTGCTCGCCTGCGACCTGCCGGGGCATGGCCTGTCCGAAGGCGAGCGGGCCAGCATCCGC
GACTTCGCCGAATACCAGGCGGTGTTCAAGGGCCTGCTGGGCCAGGCTGCCGAACTCGACCTGGCGGCGCCC
TGGCACCTCTGCGGACAAAGCACCGGTGGGGCGATCCTGCTGGACTACCTGCTGCACGGCGGCGAACGTCCC
GAGCTGGGCGAGACGATTCTCCTGGCGCCGCTGGTGCGCCCGCGCGCCTGGGGCTGGTCGAAGCTCAGCTAC
CGCCTGCTGAGCCCCTTCGTCGACTCGATCCCGCGGCGCTTCTCGGAGAACTCCAGCGATCCGCAGTTCCTC
GACTTCCTCCGCGAGCACGATCCGTTGCAGCCACGCACCCTGCCGACCGCCTGGGTCGGCGCGCTGACCCGC
TGGGTGCCGCGCATCGAGCGGGCGCCTCGGCGTGCCCTGAGCCCCCTGGTGGTGCAGGGCGAGTCCGACGAG
ACGGTGGACTGGCGCCATGGCCTTAAGGTGCTGCGGGAGAAATTCGACGAGCCGCGGATACTGTTGCTGGAA
GAGGCGCGCCATCACCTGGCGAACGAAAGCGAGGGGCTGCGGCGGCGCTATTTCGATTTCCTGAGCGACGCG
CTGGGGGCCTGA
Translation:
MCSRAAEYPWVSPVARPRIDCSPEPPMSEAFNPDYLRQHLRPLAAAEADAAVLAYQAYYGLDLRSRHPRLQA
RLGSMAVDGRRLAVQAWLLPEARGSLLLMHGYYDHMGLYRHVVDWALGMGFSVLACDLPGHGLSEGERASIR
DFAEYQAVFKGLLGQAAELDLAAPWHLCGQSTGGAILLDYLLHGGERPELGETILLAPLVRPRAWGWSKLSY
RLLSPFVDSIPRRFSENSSDPQFLDFLREHDPLQPRTLPTAWVGALTRWVPRIERAPRRALSPLVVQGESDE
TVDWRHGLKVLREKFDEPRILLLEEARHHLANESEGLRRRYFDFLSDALGA*
AnnotationID:1920GeneID:1911
AnnotatorUID: diggins
Modification Date/Time: 2005-03-24 08:08:36
Gene Name:
Confidence Code:3
GeneProduct:putative lysophospholipase
Cell Localization:()
Synonyms:PA0308
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(13) Fatty acid and phospholipid metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2267
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG2267, PldB, Lysophospholipase [Lipid metabolism]
CD-Length = 298 residues,  97.3% aligned
Score =  165 bits (419), Expect = 7e-42
Identities = 80/292 (27%), Positives = 115/292 (39%), Gaps = 20/292 (6%)







   
Genomic Context:






   
Comment:


















    ReferenceID:3825




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20972




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33646




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1911_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1911
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3365
                           PA0308_tr
                           translation of PA0308
                           339
                           99.99
                           99.99
                           0
                           1800.0
     

     
     
104260
                           gb|AAG03697.1|AE004469_2
                           (AE004469) hypothetical protein PA0308 [Pseudomonas aeruginosa PAO1]
                           339
                           99.99
                           99.99
                           0
                           1800.0
     

     
     
104262
                           gb|AAN70726.1|AE016716_5
                           (AE016793) conserved hypothetical protein [Pseudomonas putida KT2440]
                           346
                           56.64
                           67.34
                           20
                           951.0
     

     
     
104261
                           gb|AAO58725.1|
                           (AE016875) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           363
                           53.44
                           64.46
                           31
                           955.0
     

     






      

          
GC ORFID: 44913How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0308Glimmer Score: 

          
Start: 6164537Stop: 6165556

          
Length: 1020


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0308 translation of PA0308Homolog Bit Score 697.0

          
Other Homologs:  psyr_15may02_Scaffold6_revised_gene6519 (ORF: BLASTX 358.0), t_PA0308 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTGTTCGCGCGCAGCTGAATATCCCTGGGTTTCGCCCGTGGCCCGGCCACGAATAGATTGCAGCCCGGAA 
CCGCCGATGTCAGAAGCCTTCAACCCCGATTACCTGCGCCAGCACCTGCGACCCTTGGCCGCGGCCGAGGCG 
GACGCCGCCGTCCTCGCCTACCAGGCCTACTACGGCCTGGACCTGCGCTCCCGCCATCCGCGCCTGCAAGCG 
CGGCTCGGCAGCATGGCGGTCGACGGGCGCCGCCTGGCGGTGCAGGCCTGGCTGCTGCCGGAGGCGCGCGGC 
AGCCTGTTGCTGATGCATGGCTATTACGACCACATGGGACTGTATCGGCACGTGGTCGACTGGGCGCTGGGC 
ATGGGCTTCTCGGTGCTCGCCTGCGACCTGCCGGGGCATGGCCTGTCCGAAGGCGAGCGGGCCAGCATCCGC 
GACTTCGCCGAATACCAGGCGGTGTTCAAGGGCCTGCTGGGCCAGGCTGCCGAACTCGACCTGGCGGCGCCC 
TGGCACCTCTGCGGACAAAGCACCGGTGGGGCGATCCTGCTGGACTACCTGCTGCACGGCGGCGAACGTCCC 
GAGCTGGGCGAGACGATTCTCCTGGCGCCGCTGGTGCGCCCGCGCGCCTGGGGCTGGTCGAAGCTCAGCTAC 
CGCCTGCTGAGCCCCTTCGTCGACTCGATCCCGCGGCGCTTCTCGGAGAACTCCAGCGATCCGCAGTTCCTC 
GACTTCCTCCGCGAGCACGATCCGTTGCAGCCACGCACCCTGCCGACCGCCTGGGTCGGCGCGCTGACCCGC 
TGGGTGCCGCGCATCGAGCGGGCGCCTCGGCGTGCCCTGAGCCCCCTGGTGGTGCAGGGCGAGTCCGACGAG 
ACGGTGGACTGGCGCCATGGCCTTAAGGTGCTGCGGGAGAAATTCGACGAGCCGCGGATACTGTTGCTGGAA 
GAGGCGCGCCATCACCTGGCGAACGAAAGCGAGGGGCTGCGGCGGCGCTATTTCGATTTCCTGAGCGACGCG 
CTGGGGGCCTGA