ViewGene
Locus Name:
GeneID:
Location:

GeneID:1910
TrivialName: PA14_67400
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_67400
PAO1 Ortholog Locus:PA5103
Sequence Length:1023
Protein Length:340
Start: 6020128
Stop: 6019106
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08488.1|AE004923_4 (AE004923) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 339/340 (99%), Positives = 340/340 (100%)
Sequence:
ATGCCCCCGCTTCGCCAGATCCTCGCCGTCCTCGCCCTGGGCGCCAGCCTCGCCAGCCAGACCGCCGTCGCG
GCGGAATGCCCGTACCCGGGCAAAGTGGTGTTCGCCGGGCTGAACTGGGAAAGCGGCATGTTCACCACCGAC
CTGTTGCGCTACGTACTGGAAAAAGGCTACGGCTGCGAGACCGACGCGCTGCCGGGCAATACCGTGACCATG
GAAAACGCCCTGCGCCAGAACGATATCCAGGTCACCGGGGAGCAATGGGCCGGGCGTAGCCCGGTGTGGCGC
GCGGCGGAGGAGGCGGGCGAGGTGTTCTCCGTCGGCGAGACGGTGAAGGGCGCCACCGAGGGCTGGTGGGTG
CCGGAGTACCTGGTCAAGGGCGACCCGCAACGAGGCATCGAGGCGAAGGCGCCGGAGTTGAGGTCGGTCGCC
GACCTGCCGCGCTACAAGGCGCTGTTCCGCGATCCCGAGGAGCCCGCCAAGGGGCGTTTCTACAACTGCCCG
ACCGGTTGGACCTGCGAGATCGTCAACAGCCAGAAGCTCAAGGCCTACAGGTTGCAGGACAGCTACACGAAC
TTCCGCACCGGCACCGGCCCGGCGCTGGATGCGGCGATCAGTGCGGCCTTCCGGCGCGGTGAGCCGGTGCTT
TTCTACTATTGGTCGCCGACTCCGTTGATGGGCCGTTTCAAGCTGGTGCAACTGGAAGAGCCGCCGTTCAGC
GAGAAGGCCTGGGCCACCCTGTCCGATCCGAAGAACCCCGACCCCATCGGTTCCCGCTCGTTGCCGGCGAAG
ATCACCATTGGCGTTTCCCGCGATTTCCATGACAAGGCGCCGGCGTTGGTCGAGCTGTTCCGCAAGGTCGAG
ATCCCCTTGCCGCTGTTCAACGAGCTGCTCGCCGACATGGCGCAGAATCATCGCGAGGTCGGCGAGGTGCGT
GCGCAGTTCCTTCGCCAGCATCGCGAAATCTGGAGCCACTGGGTGCCAGCCGAAGTCGCCGCGCGCCTCGAT
ACCTCCCTGAAGTAA
Translation:
MPPLRQILAVLALGASLASQTAVAAECPYPGKVVFAGLNWESGMFTTDLLRYVLEKGYGCETDALPGNTVTM
ENALRQNDIQVTGEQWAGRSPVWRAAEEAGEVFSVGETVKGATEGWWVPEYLVKGDPQRGIEAKAPELRSVA
DLPRYKALFRDPEEPAKGRFYNCPTGWTCEIVNSQKLKAYRLQDSYTNFRTGTGPALDAAISAAFRRGEPVL
FYYWSPTPLMGRFKLVQLEEPPFSEKAWATLSDPKNPDPIGSRSLPAKITIGVSRDFHDKAPALVELFRKVE
IPLPLFNELLADMAQNHREVGEVRAQFLRQHREIWSHWVPAEVAARLDTSLK*
AnnotationID:1919GeneID:1910
AnnotatorUID: diggins
Modification Date/Time: 2005-03-15 07:07:58
Gene Name:
Confidence Code:3
GeneProduct:putative ABC transporter, periplasmic substrate-binding protein
Cell Localization:()
Synonyms:PA5103
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2113,pfam04069
Secondary Functional Category(ies):amino acid transport and metabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN69159.1|AE016550_1 (AE016787) amino acid transporter, periplasmic amino acid-binding
           protein, putative [Pseudomonas putida KT2440]
          Length = 338

 Score =  398 bits (1023), Expect = e-110
 Identities = 187/339 (55%), Positives = 245/339 (72%), Gaps = 1/339 (0%)

>gb|AAO55120.1| (AE016861) ABC transporter, periplasmic substrate-binding protein,
           putative [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 337

 Score =  380 bits (976), Expect = e-105
 Identities = 177/336 (52%), Positives = 243/336 (72%), Gaps = 2/336 (0%)

>emb|CAC47279.1| (AL591791) HISTIDINE-BINDING PERIPLASMIC SIGNAL PEPTIDE PROTEIN
           [Sinorhizobium meliloti]
          Length = 344

 Score =  335 bits (859), Expect = 2e-91
 Identities = 159/339 (46%), Positives = 222/339 (65%), Gaps = 2/339 (0%)






 
Structural Features:
COG2113, ProX, ABC-type proline/glycine betaine transport systems, 
periplasmic components 
[Amino acid transport and metabolism]
CD-Length = 302 residues,  98.7% aligned
Score =  244 bits (625), Expect = 9e-66
Identities = 98/333 (29%), Positives = 147/333 (44%), Gaps = 37/333 (11%)

pfam04069, OpuAC, Substrate binding domain of ABC-type glycine betaine 
transport system.
CD-Length = 260 residues, 100.0% aligned
Score =  216 bits (551), Expect = 4e-57
Identities = 76/299 (25%), Positives = 126/299 (42%), Gaps = 40/299 (13%)






   
Genomic Context:






   
Comment:


















    ReferenceID:3823




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20970




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34962




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1910_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1910
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3363
                           PA5103_tr
                           translation of PA5103
                           340
                           99.70
                           99.99
                           0
                           1802.0
     

     
     
104248
                           gb|AAG08488.1|AE004923_4
                           (AE004923) hypothetical protein PA5103 [Pseudomonas aeruginosa PAO1]
                           340
                           99.70
                           99.99
                           0
                           1802.0
     

     
     
104249
                           gb|AAN69159.1|AE016550_1
                           (AE016787) amino acid transporter, periplasmic amino acid-binding protein, putative [Pseudomonas putida KT2440]
                           341
                           55.13
                           72.72
                           4
                           1025.0
     

     
     
104250
                           gb|AAO55120.1|
                           (AE016861) ABC transporter, periplasmic substrate-binding protein, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           340
                           52.35
                           71.76
                           3
                           978.0
     

     
     
3364
                           PA5096_tr
                           translation of PA5096
                           342
                           52.04
                           68.42
                           22
                           944.0
     

     






      

          
GC ORFID: 44912How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5103Glimmer Score: 

          
Start: 5283813Stop: 5282791

          
Length: 1023


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA5103 translation of PA5103Homolog Bit Score 698.0

          
Other Homologs:  psyr_15may02_Scaffold5_revised_gene6368 (ORF: BLASTX 399.0), t_PA5096 (ORF: BLASTX 363.0), psyr_15may02_Scaffold6_revised_gene6899 (ORF: BLASTX 343.0), t_PA5103 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCCCCGCTTCGCCAGATCCTCGCCGTCCTCGCCCTGGGCGCCAGCCTCGCCAGCCAGACCGCCGTCGCG 
GCGGAATGCCCGTACCCGGGCAAAGTGGTGTTCGCCGGGCTGAACTGGGAAAGCGGCATGTTCACCACCGAC 
CTGTTGCGCTACGTACTGGAAAAAGGCTACGGCTGCGAGACCGACGCGCTGCCGGGCAATACCGTGACCATG 
GAAAACGCCCTGCGCCAGAACGATATCCAGGTCACCGGGGAGCAATGGGCCGGGCGTAGCCCGGTGTGGCGC 
GCGGCGGAGGAGGCGGGCGAGGTGTTCTCCGTCGGCGAGACGGTGAAGGGCGCCACCGAGGGCTGGTGGGTG 
CCGGAGTACCTGGTCAAGGGCGACCCGCAACGAGGCATCGAGGCGAAGGCGCCGGAGTTGAGGTCGGTCGCC 
GACCTGCCGCGCTACAAGGCGCTGTTCCGCGATCCCGAGGAGCCCGCCAAGGGGCGTTTCTACAACTGCCCG 
ACCGGTTGGACCTGCGAGATCGTCAACAGCCAGAAGCTCAAGGCCTACAGGTTGCAGGACAGCTACACGAAC 
TTCCGCACCGGCACCGGCCCGGCGCTGGATGCGGCGATCAGTGCGGCCTTCCGGCGCGGTGAGCCGGTGCTT 
TTCTACTATTGGTCGCCGACTCCGTTGATGGGCCGTTTCAAGCTGGTGCAACTGGAAGAGCCGCCGTTCAGC 
GAGAAGGCCTGGGCCACCCTGTCCGATCCGAAGAACCCCGACCCCATCGGTTCCCGCTCGTTGCCGGCGAAG 
ATCACCATTGGCGTTTCCCGCGATTTCCATGACAAGGCGCCGGCGTTGGTCGAGCTGTTCCGCAAGGTCGAG 
ATCCCCTTGCCGCTGTTCAACGAGCTGCTCGCCGACATGGCGCAGAATCATCGCGAGGTCGGCGAGGTGCGT 
GCGCAGTTCCTTCGCCAGCATCGCGAAATCTGGAGCCACTGGGTGCCAGCCGAAGTCGCCGCGCGCCTCGAT 
ACCTCCCTGAAGTAA