ViewGene
Locus Name:
GeneID:
Location:

GeneID:1909
TrivialName: PA14_62330
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_62330
PAO1 Ortholog Locus:PA4709
Sequence Length:1065
Protein Length:354
Start: 5560968
Stop: 5559904
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08095.1|AE004884_13 (AE004884) probable hemin degrading factor [Pseudomonas aeruginosa PAO1]
Identities = 347/354 (98%), Positives = 348/354 (98%)
Sequence:
ATGAGCAGCACTCCCAGCCTTTCCCATTCCCCTGCCGAGCTTTACCGCGCCTGGCAGGACCTGCGCGCCGAG
CGACCGCAGCTACGCGCGCGCGACGCCGCTGCGCTGTTGCAGGTCAGCGAAGGCGAGCTGGTCGCCAGCCGG
GTCGGCATCGATGCCGTGCGCCTGCGGCCGGACTGGGCCGCCTTGCTGCCGGCGCTCGGCGAACTGGGGCCG
ATCATGGCGCTGACCCGCAACGAGCATTGCGTCCACGAACGCAAGGGGCCGTATCGCGAAGTGACGGTCTCT
GCCAATGGGCAGATGGGCCTGGTGGTCTCGCCGGATATCGACCTGCGCCTGTTTCTGGGGGGTTGGAACGCT
GTCTTCGCCATTGCCGAGGAGACATCGCGGGGTACCCAGCGCAGCATCCAGGTGTTCGACCAGCAGGGCGTG
GCGGTGCACAAGGTGTTCCTTACCGAGGCCAGCGACGTCCGCGCCTGGGAACCGCTGGTCGAGCGCCTGCGG
GCTGCCGAGCAGGATGCCGTGCTGGCCCTGCGCGAACCCCGCGCACCGGCTGCTGCGCTCGTCGATGCGCAG
ATCGATGCCGTAGCCTTGCGCGAAGGCTGGGCCGCGTTGAAGGACACCCATCATTTCCACGCCCTGCTGAAG
AAGCATGGCGCGCAGCGCACCCAGGCGCTGCGCCTGGCTGGCGGCGAATGGGCCGAGCGCCTGGACAAGGGC
GACCTGGCGAAACTCTTCGAAGCGGCGGCCGAAAGCGGGTTGCCGATCATGGTGTTCGTCGGCAACGCCCAC
TGCATCCAGATCCATACCGGGTCTGTGTGCAACCTGAAGTGGCTGGACGACTGGTTCAACGTGCTCGATCCG
GAATTCAACCTGCACCTGAAGACCACCGGCATCGCCGAGCTTTGGCGGGTGCGCAAGCCGAGCACCGATGGC
ATCGTAACCAGTTGGGAGGCCTTCGACGCCGACGGCGAACTGATCGTGCAACTGTTCGGCGCGCGCAAGCCC
GGCGAGCCCGAGCGCGACGACTGGCGCGAACTGGCCGAATCCGTCAAGGCGCTCTGA
Translation:
MSSTPSLSHSPAELYRAWQDLRAERPQLRARDAAALLQVSEGELVASRVGIDAVRLRPDWAALLPALGELGP
IMALTRNEHCVHERKGPYREVTVSANGQMGLVVSPDIDLRLFLGGWNAVFAIAEETSRGTQRSIQVFDQQGV
AVHKVFLTEASDVRAWEPLVERLRAAEQDAVLALREPRAPAAALVDAQIDAVALREGWAALKDTHHFHALLK
KHGAQRTQALRLAGGEWAERLDKGDLAKLFEAAAESGLPIMVFVGNAHCIQIHTGSVCNLKWLDDWFNVLDP
EFNLHLKTTGIAELWRVRKPSTDGIVTSWEAFDADGELIVQLFGARKPGEPERDDWRELAESVKAL*
AnnotationID:1918GeneID:1909
AnnotatorUID: diggins
Modification Date/Time: 2005-03-09 05:05:05
Gene Name:
Confidence Code:3
GeneProduct:putative hemin degrading factor
Cell Localization:()
Synonyms:phuS
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam05171,COG3720
Secondary Functional Category(ies):inorganic ion transport and metabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAD17394.1| (AL646077) PROBABLE HEMIN TRANSPORT PROTEIN [Ralstonia
           solanacearum]
          Length = 380

 Score =  290 bits (743), Expect = 7e-78
 Identities = 168/340 (49%), Positives = 210/340 (61%), Gaps = 7/340 (2%)

>emb|CAC47007.1| (AL591790) PUTATIVE HEMIN TRANSPORT PROTEIN [Sinorhizobium
           meliloti]
          Length = 355

 Score =  274 bits (701), Expect = 5e-73
 Identities = 157/356 (44%), Positives = 214/356 (60%), Gaps = 9/356 (2%)








 
Structural Features:
pfam05171, HemS, Haemin-degrading family.
CD-Length = 355 residues, 100.0% aligned
Score =  584 bits (1506), Expect = 5e-168
Identities = 267/355 (75%), Positives = 287/355 (80%), Gaps = 1/355 (0%)

COG3720, HemS, Putative heme degradation protein 
[Inorganic ion transport and metabolism]
CD-Length = 349 residues,  98.9% aligned
Score =  501 bits (1292), Expect = 5e-143
Identities = 211/352 (59%), Positives = 245/352 (69%), Gaps = 7/352 (1%)






   
Genomic Context:






   
Comment:


















    ReferenceID:3821




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20968




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37630




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1909_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1909
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3362
                           PA4709_tr
                           translation of PA4709
                           354
                           98.02
                           98.30
                           0
                           1801.0
     

     
     
104228
                           gb|AAG08095.1|AE004884_13
                           (AE004884) probable hemin degrading factor [Pseudomonas aeruginosa PAO1]
                           354
                           98.02
                           98.30
                           0
                           1801.0
     

     
     
104229
                           gb|AAC13288.1|
                           (AF055999) hemin degrading factor [Pseudomonas aeruginosa]
                           354
                           97.74
                           98.02
                           0
                           1796.0
     

     
     
104230
                           gb|AAQ61558.1|
                           (AE016923) probable hemin degrading factor [Chromobacterium violaceum ATCC 12472]
                           360
                           45.55
                           58.05
                           22
                           757.0
     

     
     
104231
                           emb|CAD17394.1|
                           (AL646077) PROBABLE HEMIN TRANSPORT PROTEIN [Ralstonia solanacearum]
                           389
                           44.47
                           56.29
                           44
                           742.0
     

     






      

          
GC ORFID: 44911How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4709Glimmer Score: 

          
Start: 4824648Stop: 4823584

          
Length: 1065


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4709 translation of PA4709Homolog Bit Score 698.0

          
Other Homologs:  t_PA4709 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCAGCACTCCCAGCCTTTCCCATTCCCCTGCCGAGCTTTACCGCGCCTGGCAGGACCTGCGCGCCGAG 
CGACCGCAGCTACGCGCGCGCGACGCCGCTGCGCTGTTGCAGGTCAGCGAAGGCGAGCTGGTCGCCAGCCGG 
GTCGGCATCGATGCCGTGCGCCTGCGGCCGGACTGGGCCGCCTTGCTGCCGGCGCTCGGCGAACTGGGGCCG 
ATCATGGCGCTGACCCGCAACGAGCATTGCGTCCACGAACGCAAGGGGCCGTATCGCGAAGTGACGGTCTCT 
GCCAATGGGCAGATGGGCCTGGTGGTCTCGCCGGATATCGACCTGCGCCTGTTTCTGGGGGGTTGGAACGCT 
GTCTTCGCCATTGCCGAGGAGACATCGCGGGGTACCCAGCGCAGCATCCAGGTGTTCGACCAGCAGGGCGTG 
GCGGTGCACAAGGTGTTCCTTACCGAGGCCAGCGACGTCCGCGCCTGGGAACCGCTGGTCGAGCGCCTGCGG 
GCTGCCGAGCAGGATGCCGTGCTGGCCCTGCGCGAACCCCGCGCACCGGCTGCTGCGCTCGTCGATGCGCAG 
ATCGATGCCGTAGCCTTGCGCGAAGGCTGGGCCGCGTTGAAGGACACCCATCATTTCCACGCCCTGCTGAAG 
AAGCATGGCGCGCAGCGCACCCAGGCGCTGCGCCTGGCTGGCGGCGAATGGGCCGAGCGCCTGGACAAGGGC 
GACCTGGCGAAACTCTTCGAAGCGGCGGCCGAAAGCGGGTTGCCGATCATGGTGTTCGTCGGCAACGCCCAC 
TGCATCCAGATCCATACCGGGTCTGTGTGCAACCTGAAGTGGCTGGACGACTGGTTCAACGTGCTCGATCCG 
GAATTCAACCTGCACCTGAAGACCACCGGCATCGCCGAGCTTTGGCGGGTGCGCAAGCCGAGCACCGATGGC 
ATCGTAACCAGTTGGGAGGCCTTCGACGCCGACGGCGAACTGATCGTGCAACTGTTCGGCGCGCGCAAGCCC 
GGCGAGCCCGAGCGCGACGACTGGCGCGAACTGGCCGAATCCGTCAAGGCGCTCTGA