ViewGene
Locus Name:
GeneID:
Location:

GeneID:1905
TrivialName: PA14_70290
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_70290
PAO1 Ortholog Locus:PA5324
Sequence Length:1071
Protein Length:356
Start: 6268729
Stop: 6267659
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08709.1|AE004945_3 (AE004945) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 355/356 (99%), Positives = 356/356 (100%)
Sequence:
ATGCACAACAATGCCGCCGATGCGCGCTACGAACTCGCCCAGGTATCCACCTTCCTGCTGCAGACGCTGGCC
GAGGTGGTCGAAGGCCATGGCGTCGATCCCGCGCGGCTGTGCCGGGGCCTGGGCTTCACCGTCGAAGACCTG
CAGGACCCTACCCAGCGCATCTCCTACCGCCAGGCCGTGAGCATGATCCAGCGTGCCCTCCAGGCCCTGCCG
GAGCGGGGGCTGGGGCTGTGGGTCGGACACCAGAACGTGCTCGGCACCCTTGGCCTGCTGGGCCATGTGCTG
TCGCTGTGCCGGACCCTGCGCGACGCGTTCGACATCGGCGTGCGCTACCAGCACAGCTCGGGCGGGATCGTC
ACCTCCAGCGTCTACCAGCAGGGCGAAACCTTCTTCGTCGAGGTCGAATGCCACCTGCCCAGCAGTGAGGTG
CAGGTGTTTGCCATCGAGGAGTTCTTCGCCAGCCTGCTGGTGTATGGGCGTGCCCTGGTCAGCCCGGCGTTC
GAACCGCTGGGCATCGAACTCATCCATGCCGCTCCGCCCTACGCGGGCGAGTACCTGCGCCTGCTGGGGCCC
CAGGTACGCTTCGGCTGCCTGCACAACCGCATGGCGATCGCCAGCCACTGGCTGGACATGCGCCTGCCCAAC
CACAACCTGCCGGCGTTGCGCCAGGCGCTGGCCCTGCTGGAGCAGGAAAGCACCCAGGTGCACCGGAAACTC
GACCTGGTCCAGGCGGTGGAACGGGCCATCGCCCGCGACCTCAGCCTGGGCAGCCAGATCGAAAGGATTTCC
GCCGAACTGAACATGAGCAGCCGCACCCTGCGGCGCCGGCTGGCCGAACACGGGCTGACCTTCGAGGCGTTG
CTGGAGCAGGTGCGGCGAGGGCGGGCGATGAGCCTGCTGGGCAACCCCGGGATGTCCATCGAACGTATCACC
GAGGAAGTGGGATATCGTGATATCCGCAGTTTCAGGCGCGCGTTCAAGCGTTGGACGGGAGTGAGCCCGGCG
ACCTTCCGTAGCGAGGGCACGAGCCCGTTGGACCAGGTCTTCACGCTGGCCGCGCGACGCTAA
Translation:
MHNNAADARYELAQVSTFLLQTLAEVVEGHGVDPARLCRGLGFTVEDLQDPTQRISYRQAVSMIQRALQALP
ERGLGLWVGHQNVLGTLGLLGHVLSLCRTLRDAFDIGVRYQHSSGGIVTSSVYQQGETFFVEVECHLPSSEV
QVFAIEEFFASLLVYGRALVSPAFEPLGIELIHAAPPYAGEYLRLLGPQVRFGCLHNRMAIASHWLDMRLPN
HNLPALRQALALLEQESTQVHRKLDLVQAVERAIARDLSLGSQIERISAELNMSSRTLRRRLAEHGLTFEAL
LEQVRRGRAMSLLGNPGMSIERITEEVGYRDIRSFRRAFKRWTGVSPATFRSEGTSPLDQVFTLAARR*
AnnotationID:1914GeneID:1905
AnnotatorUID: diggins
Modification Date/Time: 2005-03-16 14:02:04
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator
Cell Localization:()
Synonyms:PA5324
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:smart00342
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein
CD-Length = 84 residues,  96.4% aligned
Score = 74.5 bits (183), Expect = 2e-14
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 1/81 (1%)







   
Genomic Context:






   
Comment:


















    ReferenceID:3813




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20960




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34758




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1905_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1905
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3358
                           PA5324_tr
                           translation of PA5324
                           356
                           99.71
                           99.99
                           0
                           1805.0
     

     
     
104088
                           gb|AAG08709.1|AE004945_3
                           (AE004945) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           356
                           99.71
                           99.99
                           0
                           1805.0
     

     






      

          
GC ORFID: 44907How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5324Glimmer Score: 

          
Start: 5532418Stop: 5531348

          
Length: 1071


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA5324 translation of PA5324Homolog Bit Score 699.0

          
Other Homologs:  t_PA5324 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCACAACAATGCCGCCGATGCGCGCTACGAACTCGCCCAGGTATCCACCTTCCTGCTGCAGACGCTGGCC 
GAGGTGGTCGAAGGCCATGGCGTCGATCCCGCGCGGCTGTGCCGGGGCCTGGGCTTCACCGTCGAAGACCTG 
CAGGACCCTACCCAGCGCATCTCCTACCGCCAGGCCGTGAGCATGATCCAGCGTGCCCTCCAGGCCCTGCCG 
GAGCGGGGGCTGGGGCTGTGGGTCGGACACCAGAACGTGCTCGGCACCCTTGGCCTGCTGGGCCATGTGCTG 
TCGCTGTGCCGGACCCTGCGCGACGCGTTCGACATCGGCGTGCGCTACCAGCACAGCTCGGGCGGGATCGTC 
ACCTCCAGCGTCTACCAGCAGGGCGAAACCTTCTTCGTCGAGGTCGAATGCCACCTGCCCAGCAGTGAGGTG 
CAGGTGTTTGCCATCGAGGAGTTCTTCGCCAGCCTGCTGGTGTATGGGCGTGCCCTGGTCAGCCCGGCGTTC 
GAACCGCTGGGCATCGAACTCATCCATGCCGCTCCGCCCTACGCGGGCGAGTACCTGCGCCTGCTGGGGCCC 
CAGGTACGCTTCGGCTGCCTGCACAACCGCATGGCGATCGCCAGCCACTGGCTGGACATGCGCCTGCCCAAC 
CACAACCTGCCGGCGTTGCGCCAGGCGCTGGCCCTGCTGGAGCAGGAAAGCACCCAGGTGCACCGGAAACTC 
GACCTGGTCCAGGCGGTGGAACGGGCCATCGCCCGCGACCTCAGCCTGGGCAGCCAGATCGAAAGGATTTCC 
GCCGAACTGAACATGAGCAGCCGCACCCTGCGGCGCCGGCTGGCCGAACACGGGCTGACCTTCGAGGCGTTG 
CTGGAGCAGGTGCGGCGAGGGCGGGCGATGAGCCTGCTGGGCAACCCCGGGATGTCCATCGAACGTATCACC 
GAGGAAGTGGGATATCGTGATATCCGCAGTTTCAGGCGCGCGTTCAAGCGTTGGACGGGAGTGAGCCCGGCG 
ACCTTCCGTAGCGAGGGCACGAGCCCGTTGGACCAGGTCTTCACGCTGGCCGCGCGACGCTAA