ViewGene
Locus Name:
GeneID:
Location:

GeneID:1904
TrivialName: PA14_09530
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_09530
PAO1 Ortholog Locus:PA4206
Sequence Length:1113
Protein Length:370
Start: 820520
Stop: 819408
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07593.1|AE004837_4 (AE004837) probable RND efflux membrane fusion protein precursor [Pseudomonas aeruginosa PAO1]
Identities = 369/370 (99%), Positives = 369/370 (99%)
Sequence:
ATGCAGAAACCCGTCCTGATCGCCAGTGCCGCGCTCATCTGCGCGGCGGTTATCGGCATCGCCGTCTACGCC
ACCGGCTCGGCGAAGAAAGACGCCGGCGGTTTCGCCGGCTACCCGCCGGTAAAGGTCGCCCTCGCCTCGGTG
GAGCGGCGGGTGGTACCGCGCGTCTTCGATGGCGTCGGCGAGCTGGAGGCCGGTCGCCAGGTCCAGGTGGCC
GCCGAAGCGGCAGGACGGATCACCCGCATCGCCTTCGAATCGGGCCAGCAGGTGCAGCAAGGGCAGTTGCTG
GTGCAACTCAACGACGCGGTGGAACAGGCCGAGCTGATCCGTCTCAAGGCGCAGTTGCGCAATGCCGAGATC
CTCCATGCCCGTGCGCGCAAGCTGGTAGAGCGCAACGTCGCCTCGCAGGAACAGCTGGACAACGCCGTCGCC
GCCCGCGACATGGCGCTCGGCGCGGTGCGCCAGACCCAGGCGCTGATCGACCAGAAGGCGATCAGCGCGCCC
TTCTCCGGCCAGCTCGGCATCCGCCGCGTGCACCTCGGCCAGTACCTCGGCGTCGCCGAGCCGGTGGCCAGC
CTGGTGGATGCGCGGACCCTGAAAAGCAATTTCTCCCTGGACGAAAGCACCAGTCCCGAGCTGAAGCTCGGC
CAGCCCCTCGAGGTCCTGGTCGACGCCTATCCGGGGCGCAGCTTCCCGGCGCGCATCAGCGCCATCGACCCG
CTGATCGGCAAGTCGCGCACGGTGCAGGTCCAGGCCTTGCTGGACAACCCCGAAGGCCTGCTCGCCGCCGGC
ATGTTCGCCAGCATCCGGGTCTCGCGCAAAGCCGACGCGCCGTCGCTGAGCGTGCCGGAAACCGCAGTCACC
TACACCGCCTACGGCGACACCGTGTTCGTCGCCCACCAGGACGGCGACCGGCCGCTCAGCGCCAAGCGCGTC
TCGGTGCGGATCGGCGAGCGCTGGGACGGTCGCGTGGAAATCCTCCAGGGCCTCGCCGAGGGCGACCGGGTA
GTGACTTCCGGGCAGATCAACCTGAGCGACGGGATGGCCGTGGAACCGGTCAAGGAAGACACCCTGAGCAGC
GCCGCGCCCCCCGTGCCGGTCGCAGGCCGCTGA
Translation:
MQKPVLIASAALICAAVIGIAVYATGSAKKDAGGFAGYPPVKVALASVERRVVPRVFDGVGELEAGRQVQVA
AEAAGRITRIAFESGQQVQQGQLLVQLNDAVEQAELIRLKAQLRNAEILHARARKLVERNVASQEQLDNAVA
ARDMALGAVRQTQALIDQKAISAPFSGQLGIRRVHLGQYLGVAEPVASLVDARTLKSNFSLDESTSPELKLG
QPLEVLVDAYPGRSFPARISAIDPLIGKSRTVQVQALLDNPEGLLAAGMFASIRVSRKADAPSLSVPETAVT
YTAYGDTVFVAHQDGDRPLSAKRVSVRIGERWDGRVEILQGLAEGDRVVTSGQINLSDGMAVEPVKEDTLSS
AAPPVPVAGR*
AnnotationID:1913GeneID:1904
AnnotatorUID: diggins
Modification Date/Time: 2005-01-05 07:07:59
Gene Name:mexH
Confidence Code:1
GeneProduct:RND efflux membrane fusion protein precursor
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):membrane protein
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN67678.1|AE016398_2 (AE016781) multidrug efflux RND membrane fusion protein
           [Pseudomonas putida KT2440]
          Length = 365

 Score =  342 bits (878), Expect = 2e-93
 Identities = 193/362 (53%), Positives = 239/362 (66%), Gaps = 4/362 (1%)

>emb|CAE38687.1| (BX640433) probable HlyD-family secretion protein [Bordetella
           parapertussis]
          Length = 368

 Score =  299 bits (766), Expect = 2e-80
 Identities = 171/352 (48%), Positives = 230/352 (65%), Gaps = 7/352 (1%)








 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:3811




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20958




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36914




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1904_cdd.html


    		




 
URL:

















    ReferenceID:37006




  
Author/Investigator(s):
        Aendekerk S, Ghysels B, Cornelis P, Baysse C.





  
Title:
        Characterization of a new efflux pump, MexGHI-OpmD, from Pseudomonas aeruginosa that confers resistance to vanadium.




  
PubMed:
        12177331


MedLine:
        




    
Source:
Microbiology. 2002 Aug;148(Pt 8):2371-81.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12177331









           
Homologs By Global Alignment 

           

       



     
Gene ID:1904
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3357
                           PA4206_tr
                           translation of PA4206
                           370
                           99.72
                           99.72
                           0
                           1804.0
     

     
     
104081
                           gb|AAG07593.1|AE004837_4
                           (AE004837) probable RND efflux membrane fusion protein precursor [Pseudomonas aeruginosa PAO1]
                           370
                           99.72
                           99.72
                           0
                           1804.0
     

     
     
104082
                           gb|AAN67678.1|AE016398_2
                           (AE016781) multidrug efflux RND membrane fusion protein [Pseudomonas putida KT2440]
                           375
                           52.53
                           64.53
                           15
                           881.0
     

     
     
104083
                           emb|CAE38687.1|
                           (BX640433) probable HlyD-family secretion protein [Bordetella parapertussis]
                           376
                           46.27
                           62.23
                           14
                           765.0
     

     
     
104084
                           emb|CAE35826.1|
                           (BX640448) probable HlyD-family secretion protein [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50]
                           383
                           45.16
                           60.83
                           28
                           763.0
     

     






      

          
GC ORFID: 44906How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4206Glimmer Score: 

          
Start: 4133417Stop: 4134529

          
Length: 1113


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4206 translation of PA4206Homolog Bit Score 699.0

          
Other Homologs:  t_PA4206 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCAGAAACCCGTCCTGATCGCCAGTGCCGCGCTCATCTGCGCGGCGGTTATCGGCATCGCCGTCTACGCC 
ACCGGCTCGGCGAAGAAAGACGCCGGCGGTTTCGCCGGCTACCCGCCGGTAAAGGTCGCCCTCGCCTCGGTG 
GAGCGGCGGGTGGTACCGCGCGTCTTCGATGGCGTCGGCGAGCTGGAGGCCGGTCGCCAGGTCCAGGTGGCC 
GCCGAAGCGGCAGGACGGATCACCCGCATCGCCTTCGAATCGGGCCAGCAGGTGCAGCAAGGGCAGTTGCTG 
GTGCAACTCAACGACGCGGTGGAACAGGCCGAGCTGATCCGTCTCAAGGCGCAGTTGCGCAATGCCGAGATC 
CTCCATGCCCGTGCGCGCAAGCTGGTAGAGCGCAACGTCGCCTCGCAGGAACAGCTGGACAACGCCGTCGCC 
GCCCGCGACATGGCGCTCGGCGCGGTGCGCCAGACCCAGGCGCTGATCGACCAGAAGGCGATCAGCGCGCCC 
TTCTCCGGCCAGCTCGGCATCCGCCGCGTGCACCTCGGCCAGTACCTCGGCGTCGCCGAGCCGGTGGCCAGC 
CTGGTGGATGCGCGGACCCTGAAAAGCAATTTCTCCCTGGACGAAAGCACCAGTCCCGAGCTGAAGCTCGGC 
CAGCCCCTCGAGGTCCTGGTCGACGCCTATCCGGGGCGCAGCTTCCCGGCGCGCATCAGCGCCATCGACCCG 
CTGATCGGCAAGTCGCGCACGGTGCAGGTCCAGGCCTTGCTGGACAACCCCGAAGGCCTGCTCGCCGCCGGC 
ATGTTCGCCAGCATCCGGGTCTCGCGCAAAGCCGACGCGCCGTCGCTGAGCGTGCCGGAAACCGCAGTCACC 
TACACCGCCTACGGCGACACCGTGTTCGTCGCCCACCAGGACGGCGACCGGCCGCTCAGCGCCAAGCGCGTC 
TCGGTGCGGATCGGCGAGCGCTGGGACGGTCGCGTGGAAATCCTCCAGGGCCTCGCCGAGGGCGACCGGGTA 
GTGACTTCCGGGCAGATCAACCTGAGCGACGGGATGGCCGTGGAACCGGTCAAGGAAGACACCCTGAGCAGC 
GCCGCGCCCCCCGTGCCGGTCGCAGGCCGCTGA