ViewGene
Locus Name:
GeneID:
Location:

GeneID:1902
TrivialName: PA14_34830
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_34830
PAO1 Ortholog Locus:PA2303
Sequence Length:1020
Protein Length:339
Start: 3095748
Stop: 3096767
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05691.1|AE004656_3 (AE004656) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 337/339 (99%), Positives = 337/339 (99%)
Sequence:
ATGAGCGCCTCGTTCAGCGCGCCGCGCCTGCGCCCCCGGCAGCTCTCGGCCGGCGACCTGGTGGAGGAGAGC
CTGCTCGACCCGGCCAACGACTACCTGCGCATCGTCCGCGCGCGCCAGCCGGGCATGGACCTGCGGCAATGG
ATCGCCGCCGCCGGCGCAGGGCTACGCGACAGCCTGCTGCGGCATGGCGGCATCCTGTTCCGTGGCTTCGCG
GTGGACGGCGCGGAGGGCTTCTCCCAGGCCGTGCAAGGCTTTTCGCCGAACATGCTCGACTACCTGGAGCGC
GCGGCGGCGCGCCAGGAAGTGGCGCACCGGGTGTTCACTTCCACCGAGTTCTCGCCGGATGGCTGGATTCCG
CCGCACCACGAAATGTCCTACTCGCACAACTGGCCGAGCTACATCCACTTCTACTGCCAGACGCCGCCCGCC
ACCCAGGGCCGCACGCCCCTGGCCGACGAGCGCCGGGTCAGCGCCCGGATACCCGAGGCGATCAGGCAGCGC
TTCCTCCGCCATGGGGTGTGCTACGTGCGCAACTACGGGCCGGAGATCGACCTGACCTGGCAGGAAGGCTTC
CAGACCGACAGCCGCGCCGAGGTCGAGGCCTACTGCCGGCAGACCGGTACCCAATGGACCTGGCTCGACGAC
CAGCGCCTGAATACCCGCCAGGTGCGCCAGGCGATGGTGCGCCACCCGCTCAGCGGCGAGCCGCTGTGGTTC
AACCACGCGCACATGTTCCATGTCTCCAACATGCCGCCGGCCCTGGCCCGGGCCTTGCTCGACGAGGTCGGC
GAACAGGGCCTGCCGCGCAACGCCTACTACGGCGACGGCAGCCCGATCGAGGCGGAGGTGCTGGACACCATC
CGCGCCGCCTACCGCGAGGAAACCCGCGCCTTCGCCTGGGAGCGCGGCGATGTCCTGATGCTCGACAACTTC
ATCAGCGTCCACGGCCGCGAGCCGTACACCGGCGAGCGCAAGGTGCTGGTGGCGATGACCGACCTGCATGTC
CACCAACCCTGA
Translation:
MSASFSAPRLRPRQLSAGDLVEESLLDPANDYLRIVRARQPGMDLRQWIAAAGAGLRDSLLRHGGILFRGFA
VDGAEGFSQAVQGFSPNMLDYLERAAARQEVAHRVFTSTEFSPDGWIPPHHEMSYSHNWPSYIHFYCQTPPA
TQGRTPLADERRVSARIPEAIRQRFLRHGVCYVRNYGPEIDLTWQEGFQTDSRAEVEAYCRQTGTQWTWLDD
QRLNTRQVRQAMVRHPLSGEPLWFNHAHMFHVSNMPPALARALLDEVGEQGLPRNAYYGDGSPIEAEVLDTI
RAAYREETRAFAWERGDVLMLDNFISVHGREPYTGERKVLVAMTDLHVHQP*
AnnotationID:1911GeneID:1902
AnnotatorUID: diggins
Modification Date/Time: 2005-03-04 12:12:46
Gene Name:
Confidence Code:3
GeneProduct:putative regulatory protein
Cell Localization:()
Synonyms:PA2303
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):putative enzyme
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gb|AAN85495.1|AF484556_17 (AF484556) putative regulatory protein [Streptomyces atroolivaceus]
          Length = 335

 Score =  370 bits (950), Expect = e-102
 Identities = 171/308 (55%), Positives = 219/308 (71%)








 
Structural Features:






   
Genomic Context:






   
Comment:
possible duplication of gene #1802.



















    ReferenceID:3807




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20954




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32487




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1902_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1902
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3354
                           PA2303_tr
                           translation of PA2303
                           339
                           99.41
                           99.41
                           0
                           1804.0
     

     
     
104065
                           gb|AAG05691.1|AE004656_3
                           (AE004656) hypothetical protein PA2303 [Pseudomonas aeruginosa PAO1]
                           339
                           99.41
                           99.41
                           0
                           1804.0
     

     
     
104066
                           gb|AAN85495.1|AF484556_17
                           (AF484556) putative regulatory protein [Streptomyces atroolivaceus]
                           342
                           51.75
                           66.95
                           10
                           953.0
     

     
     
3355
                           PA2304_tr
                           translation of PA2304
                           371
                           43.12
                           55.52
                           41
                           757.0
     

     
     
104067
                           gb|AAG05692.1|AE004656_4
                           (AE004656) hypothetical protein PA2304 [Pseudomonas aeruginosa PAO1]
                           371
                           43.12
                           55.52
                           41
                           757.0
     

     






      

          
GC ORFID: 44904How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2303Glimmer Score: 

          
Start: 1858168Stop: 1857149

          
Length: 1020


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2303 translation of PA2303Homolog Bit Score 699.0

          
Other Homologs:  t_PA2304 (ORF: BLASTX 296.0), psyr_15may02_Scaffold1_revised_gene952 (ORF: BLASTX 281.0), t_PA2303 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCGCCTCGTTCAGCGCGCCGCGCCTGCGCCCCCGGCAGCTCTCGGCCGGCGACCTGGTGGAGGAGAGC 
CTGCTCGACCCGGCCAACGACTACCTGCGCATCGTCCGCGCGCGCCAGCCGGGCATGGACCTGCGGCAATGG 
ATCGCCGCCGCCGGCGCAGGGCTACGCGACAGCCTGCTGCGGCATGGCGGCATCCTGTTCCGTGGCTTCGCG 
GTGGACGGCGCGGAGGGCTTCTCCCAGGCCGTGCAAGGCTTTTCGCCGAACATGCTCGACTACCTGGAGCGC 
GCGGCGGCGCGCCAGGAAGTGGCGCACCGGGTGTTCACTTCCACCGAGTTCTCGCCGGATGGCTGGATTCCG 
CCGCACCACGAAATGTCCTACTCGCACAACTGGCCGAGCTACATCCACTTCTACTGCCAGACGCCGCCCGCC 
ACCCAGGGCCGCACGCCCCTGGCCGACGAGCGCCGGGTCAGCGCCCGGATACCCGAGGCGATCAGGCAGCGC 
TTCCTCCGCCATGGGGTGTGCTACGTGCGCAACTACGGGCCGGAGATCGACCTGACCTGGCAGGAAGGCTTC 
CAGACCGACAGCCGCGCCGAGGTCGAGGCCTACTGCCGGCAGACCGGTACCCAATGGACCTGGCTCGACGAC 
CAGCGCCTGAATACCCGCCAGGTGCGCCAGGCGATGGTGCGCCACCCGCTCAGCGGCGAGCCGCTGTGGTTC 
AACCACGCGCACATGTTCCATGTCTCCAACATGCCGCCGGCCCTGGCCCGGGCCTTGCTCGACGAGGTCGGC 
GAACAGGGCCTGCCGCGCAACGCCTACTACGGCGACGGCAGCCCGATCGAGGCGGAGGTGCTGGACACCATC 
CGCGCCGCCTACCGCGAGGAAACCCGCGCCTTCGCCTGGGAGCGCGGCGATGTCCTGATGCTCGACAACTTC 
ATCAGCGTCCACGGCCGCGAGCCGTACACCGGCGAGCGCAAGGTGCTGGTGGCGATGACCGACCTGCATGTC 
CACCAACCCTGA