ViewGene

Locus Name:
GeneID:
Location:

GeneID:1900
TrivialName: PA14_60700
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_60700
PAO1 Ortholog Locus:PA4587
Sequence Length:1041
Protein Length:346
Start: 5408784
Stop: 5409824
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07975.1|AE004872_6 (AE004872) cytochrome c551 peroxidase precursor [Pseudomonas aeruginosa PAO1]
Identities = 346/346 (100%), Positives = 346/346 (100%)
Sequence:
ATGCAGTCCTCGCAACTGCTCCCGCTTGGCAGCCTGTTGCTGTCGTTCGCCACGCCCCTCGCCCAGGCCGAT
GCCCTGCACGACCAGGCCAGCGCGCTGTTCAAACCCATCCCCGAGCAGGTCACCGAGCTGCGCGGCCAGCCC
ATCAGCGAGCAACAGCGCGAACTCGGCAAGAAACTGTTCTTCGACCCGCGCCTGTCGCGCAGCCATGTGCTC
AGCTGCAACACCTGCCACAACGTCGGCACCGGCGGCGCCGACAACGTACCGACGTCGGTCGGTCACGGCTGG
CAGAAGGGGCCACGCAATTCGCCGACGGTCTTCAACGCCGTGTTCAATGCCGCGCAGTTCTGGGATGGCCGC
GCCAAGGACCTGGGGGAGCAGGCCAAGGGTCCGATCCAGAACAGCGTCGAGATGCACAGTACCCCGCAGTTG
GTCGAACAGACCCTGGGCAGCATCCCGGAATACGTGGACGCCTTCCGCAAGGCCTTCCCCAAGGCCGGCAAG
CCGGTCAGCTTCGACAACATGGCGCTGGCCATCGAGGCCTACGAGGCGACCCTGGTGACTCCGGACTCGCCC
TTCGACCTGTATCTCAAGGGCGACGACAAGGCCCTCGACGCGCAGCAGAAGAAAGGCCTCAAGGCGTTCATG
GACAGTGGCTGCAGCGCCTGCCACAACGGCATCAATCTGGGCGGCCAGGCCTACTTCCCGTTCGGCCTGGTG
AAGAAGCCCGACGCTAGCGTCCTGCCCAGCGGCGACAAGGGCCGCTTCGCCGTGACCAAGACCCAGAGCGAC
GAGTACGTATTCCGCGCCGCGCCCCTGCGCAATGTCGCCCTCACCGCGCCGTACTTCCACAGCGGCCAGGTC
TGGGAACTCAAGGACGCGGTGGCGATCATGGGCAACGCCCAGCTCGGCAAGCAGTTGGCGCCGGACGACGTG
GAGAACATCGTCGCCTTCCTGCACAGCCTGAGCGGCAAGCAGCCGCGCGTCGAATATCCGCTGCTGCCGGCC
AGCACGGAGACCACGCCGCGTCCCGCGGAATAA
Translation:
MQSSQLLPLGSLLLSFATPLAQADALHDQASALFKPIPEQVTELRGQPISEQQRELGKKLFFDPRLSRSHVL
SCNTCHNVGTGGADNVPTSVGHGWQKGPRNSPTVFNAVFNAAQFWDGRAKDLGEQAKGPIQNSVEMHSTPQL
VEQTLGSIPEYVDAFRKAFPKAGKPVSFDNMALAIEAYEATLVTPDSPFDLYLKGDDKALDAQQKKGLKAFM
DSGCSACHNGINLGGQAYFPFGLVKKPDASVLPSGDKGRFAVTKTQSDEYVFRAAPLRNVALTAPYFHSGQV
WELKDAVAIMGNAQLGKQLAPDDVENIVAFLHSLSGKQPRVEYPLLPASTETTPRPAE*
AnnotationID:1909GeneID:1900
AnnotatorUID: diggins
Modification Date/Time: 2005-05-06 05:05:51
Gene Name:ccpR
Confidence Code:1
GeneProduct:cytochrome c551 peroxidase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1858,pfam03150
Secondary Functional Category(ies):transport of small molecules
EC Number:1.11.1.5
Status:ACTIVE
Pathway:
Homology:
>emb|CAD31236.1| (AL672115) PROBABLE CYTOCHROME C PEROXIDASE PROTEIN [Mesorhizobium
           loti]
          Length = 361

 Score =  411 bits (1056), Expect = e-114
 Identities = 198/319 (62%), Positives = 243/319 (76%), Gaps = 1/319 (0%)

>emb|CAB74195.1| (AL139075) putative cytochrome C551 peroxidase [Campylobacter
           jejuni subsp. jejuni NCTC 11168]
          Length = 341

 Score =  290 bits (741), Expect = 1e-77
 Identities = 153/313 (48%), Positives = 205/313 (65%), Gaps = 22/313 (7%)

Structural Features:
COG1858, MauG, Cytochrome c peroxidase 
[Inorganic ion transport and metabolism]
CD-Length = 364 residues, 100.0% aligned
Score =  357 bits (918), Expect = 2e-99
Identities = 168/364 (46%), Positives = 207/364 (56%), Gaps = 35/364 (9%)

pfam03150, CCP_MauG, Di-haem cytochrome c peroxidase.
CD-Length = 173 residues, 100.0% aligned
Score =  252 bits (646), Expect = 7e-68
Identities = 104/175 (59%), Positives = 122/175 (69%), Gaps = 2/175 (1%)
Genomic Context:
Comment:
ReferenceID:3803
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:20950
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:31633
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:1900_cdd.html
URL:
ReferenceID:33207
Author/Investigator(s): Ridout CJ, James R, Greenwood C.
Title: Nucleotide sequence encoding the di-haem cytochrome c551 peroxidase from Pseudomonas aeruginosa.
PubMed: 7781769
MedLine:
Source:
FEBS Lett. 1995 May 29;365(2-3):152-4.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=7781769
ReferenceID:33208
Author/Investigator(s): Nordling M, Young S, Karlsson BG, Lundberg LG.
Title: The structural gene for cytochrome c551 from Pseudomonas aeruginosa. The nucleotide sequence shows a location downstream of the nitrite reductase gene.
PubMed: 2152881
MedLine:
Source:
FEBS Lett. 1990 Jan 1;259(2):230-2.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=2152881
Homologs By Global Alignment
Gene ID:1900

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
3350 PA4587_tr translation of PA4587 346 99.99 99.99 0 1807.0
103988 gb|AAG07975.1|AE004872_6 (AE004872) cytochrome c551 peroxidase precursor [Pseudomonas aeruginosa PAO1] 346 99.99 99.99 0 1807.0
103989 gb|AAC43378.1| (U23766) cytochrome c551 peroxidase [Pseudomonas aeruginosa] 346 99.99 99.99 0 1807.0
103990 gb|AAB50671.1| cytochrome c peroxidase [Pseudomonas aeruginosa, Peptide, 323 aa] 346 93.06 93.35 23 1696.0
103991 gb|AAR36207.1| (AE017217) cytochrome c551 peroxidase [Geobacter sulfurreducens PCA] 347 63.40 75.21 3 1160.0
GC ORFID: 44902How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4587Glimmer Score:
Start: 4672464Stop: 4673504
Length: 1041
Start Codon: ATGTruncated Start:
Stop Codon: TAATruncated Stop:
Homolog: t_PA4587 translation of PA4587Homolog Bit Score 700.0
Other Homologs: t_PA4587 (ORF: GLIMMER)
GC ORF Sequence
ATGCAGTCCTCGCAACTGCTCCCGCTTGGCAGCCTGTTGCTGTCGTTCGCCACGCCCCTCGCCCAGGCCGAT
GCCCTGCACGACCAGGCCAGCGCGCTGTTCAAACCCATCCCCGAGCAGGTCACCGAGCTGCGCGGCCAGCCC
ATCAGCGAGCAACAGCGCGAACTCGGCAAGAAACTGTTCTTCGACCCGCGCCTGTCGCGCAGCCATGTGCTC
AGCTGCAACACCTGCCACAACGTCGGCACCGGCGGCGCCGACAACGTACCGACGTCGGTCGGTCACGGCTGG
CAGAAGGGGCCACGCAATTCGCCGACGGTCTTCAACGCCGTGTTCAATGCCGCGCAGTTCTGGGATGGCCGC
GCCAAGGACCTGGGGGAGCAGGCCAAGGGTCCGATCCAGAACAGCGTCGAGATGCACAGTACCCCGCAGTTG
GTCGAACAGACCCTGGGCAGCATCCCGGAATACGTGGACGCCTTCCGCAAGGCCTTCCCCAAGGCCGGCAAG
CCGGTCAGCTTCGACAACATGGCGCTGGCCATCGAGGCCTACGAGGCGACCCTGGTGACTCCGGACTCGCCC
TTCGACCTGTATCTCAAGGGCGACGACAAGGCCCTCGACGCGCAGCAGAAGAAAGGCCTCAAGGCGTTCATG
GACAGTGGCTGCAGCGCCTGCCACAACGGCATCAATCTGGGCGGCCAGGCCTACTTCCCGTTCGGCCTGGTG
AAGAAGCCCGACGCTAGCGTCCTGCCCAGCGGCGACAAGGGCCGCTTCGCCGTGACCAAGACCCAGAGCGAC
GAGTACGTATTCCGCGCCGCGCCCCTGCGCAATGTCGCCCTCACCGCGCCGTACTTCCACAGCGGCCAGGTC
TGGGAACTCAAGGACGCGGTGGCGATCATGGGCAACGCCCAGCTCGGCAAGCAGTTGGCGCCGGACGACGTG
GAGAACATCGTCGCCTTCCTGCACAGCCTGAGCGGCAAGCAGCCGCGCGTCGAATATCCGCTGCTGCCGGCC
AGCACGGAGACCACGCCGCGTCCCGCGGAATAA