ViewGene
Locus Name:
GeneID:
Location:

GeneID:190
TrivialName: PA14_01870
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_01870
PAO1 Ortholog Locus:PA0151
Sequence Length:2388
Protein Length:795
Start: 169897
Stop: 172284
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03541.1|AE004453_4 (AE004453) probable TonB-dependent receptor [Pseudomonas aeruginosa PAO1]
Identities = 788/795 (99%), Positives = 790/795 (99%)
Sequence:
ATGACCCCGTTCCCGCGCTTCGCCCTGCGTACTCTCCCCGCCCTGTTCCTCAGCCTCGGCTGTCTCGCCGCC
ACCGCGCAGGCCGCCGAGGCGGTTCGCTATCGCTTCAGCCAGGCTGCCGCGCCGCTGGCCCAGGCGCTCAAC
GCGTTCAGCCGGGCCAGCGGGCAGACGCTGCTCTACACCGCCGAGCTGCCGCCGCAGGCGACCGCCCCGGCA
TTGCACGGTTCGCTGGACGCGGAGGAGGCGCTGCAACGCCTGCTGCAGGGCAGCGGCCTGCGCGCGCGGCGG
ATCGACGAGCGCACCCTGACCCTGGAACCGATCCCCGCCAGCGGCGCGCTCGACCTCGATGCCACGACGGTG
TCCGCCGCCGCCCCGGCGCAGGGCTACCGGCCGGCGGCCAACGCCTCGATCAGCCGCGGCGATGCGCCGCTA
CTGGAAATCCCCCAGGCGATCAGCGTGGTCCCGGCACAGGCGCTGCAGGACCAGCGCCCGCGCAACCTTGAC
GACGCGCTGGGCAACATCAGCGGCATCACCCAGGCCAACACCCTCGGCGGTACCCAGGACGCGGTGATGAAA
CGCGGCTTCGGCGACAACCGCGACGGCTCGATCATGCGCGACGGCATGCCCTCGGTGCAGGGCCGCAATTTC
ACCGCCACCGCCGACCACGTCGAGGTGCTGAAGGGGCCTGCATCCCTGCTCTATGGCATCCAGGACCCGGGC
GGGGTGGTCAACGTGGTGAGCAAGAAGCCGCAACTGCAACAAGCCAACGCCCTGACCCTGCGTGGCTCGGCC
TACGCCCACGGGCGCAACGGCAGCGGCGGCCAGCTCGACTCCACCGGCCCGCTGGGCGACAGCGGACTGGCC
TACCGGATGATCCTCGATCATGAGGACGAGGATTACTGGCGCGACTTCGGCAAGAGTCGCGAGACGCTGGTG
ACGCCCTCGCTGGCCTGGTACGGCGAGGACACGACGGTCAACCTGAGCTACGAGCACCGCGAGTTCACCACG
CCGTTCGACCGTGGCACGGCCATCGACCCGCGTACCAACCGCCCGCTGGACATCCCGCGCAGCCGGCGCCTG
GACGAGCCCTTCAACATCACCGAGGGCCGTTCCGAGCTGACCCGCCTGGATCTCGAACGGCAGCTCGACGAC
ACCTGGAAGGCCCACTTCGGCTACGGCTACAGTCGCGAGACCTACGACGACAACCAGGCCCGGGTGATGGCC
GTGAATGCCGACGGCACCCTGACCCGGCGCATGGACGGCACCCACGGCGCGGTCAGCAGCGACAGCTTCGCC
ACCCTCGGCCTGAGCGGAACGCTGCAACTGGCCGGGATGCAACATGACCTGCAATTCGGCATGGACCACGAG
AAGCGCAAGATCTTCCGCGCCGACCTGCTGCGCGACAGCAAGACCAGCCGCTTCGACTACCTCGACCCGGTC
TATGGCCAGGTGGTGCCGTCGACCCGGGTGGTCGCCGGCGACAGCGACCAGACCGACAAGCTGCGCAGCGAC
TCGCTGTACTTCCAGGACTCGATCCACCTGGACGAACGCTGGATCCTGGTCGGCGGCGCGCGCTACCAGATC
TACGACCAGCTCGCCGGGCGCGGCCGGCCGTTCAACGCCAACACCGACATCAACGGGCAGAAATGGGTGCCG
CGCGGCGGCCTGGTCTACCGCCTGAGCGACGAGGTTTCGCTGTACGGCAGCTACACGCGCTCGTTCAAGCCG
AACTCGACCATCGCCCCGCTGAGCACCGGCGAGACCATCGATTCGGCGATCCTGCCGGAGGAGGCGACCTCC
TGGGAGCTGGGCGCCAAGCTGGATGTGCCGGGGCGTCTCAGCGGCACCCTGGCGCTGTTCGACATCCGCAAG
AAGAACGTGCTGGTCAACGAACTCGACGGTGCCGGCAACAGCAGCGTGCGCGCCGCCGGCCGGGTCCGCTCG
CGCGGCCTGGAGCTGGACCTCACCGGCCAGCTCAGCGAACGCTGGAGCCTGATCGGCAGCTACGCCTGGCTC
GCCGCGGAAGTCACCGAGGACCCGACCCTGGAGGGCAAGCGCCTGCAGAACGTGGCGCGCAACACCGCGTCG
CTGTCGGCGGTCTACGAACTCGGCCAGCTCTTCGGCGGCGACCGCCTGCGCCTGGGCGGCGGCGCGCGCTAC
GTCGGCAAGCGCCCGGGCGACCCGGCCAATTCCTTCGACCTGCCGTCCTACACCGTGGCCGATGCCTTCGCC
AGCTACGACACCCGCTTCGGCGGACACGGCGTGAAGTTCCAGCTCAACGTGAAGAACCTGTTCGACCGCACC
TACTACCCGTCCAGTGCCAATCGCCTGTACGTGGCGATGGGCGAGCCTCGGCAGTTCCAGCTGTCGACGACG
GTGGAGTTCTGA
Translation:
MTPFPRFALRTLPALFLSLGCLAATAQAAEAVRYRFSQAAAPLAQALNAFSRASGQTLLYTAELPPQATAPA
LHGSLDAEEALQRLLQGSGLRARRIDERTLTLEPIPASGALDLDATTVSAAAPAQGYRPAANASISRGDAPL
LEIPQAISVVPAQALQDQRPRNLDDALGNISGITQANTLGGTQDAVMKRGFGDNRDGSIMRDGMPSVQGRNF
TATADHVEVLKGPASLLYGIQDPGGVVNVVSKKPQLQQANALTLRGSAYAHGRNGSGGQLDSTGPLGDSGLA
YRMILDHEDEDYWRDFGKSRETLVTPSLAWYGEDTTVNLSYEHREFTTPFDRGTAIDPRTNRPLDIPRSRRL
DEPFNITEGRSELTRLDLERQLDDTWKAHFGYGYSRETYDDNQARVMAVNADGTLTRRMDGTHGAVSSDSFA
TLGLSGTLQLAGMQHDLQFGMDHEKRKIFRADLLRDSKTSRFDYLDPVYGQVVPSTRVVAGDSDQTDKLRSD
SLYFQDSIHLDERWILVGGARYQIYDQLAGRGRPFNANTDINGQKWVPRGGLVYRLSDEVSLYGSYTRSFKP
NSTIAPLSTGETIDSAILPEEATSWELGAKLDVPGRLSGTLALFDIRKKNVLVNELDGAGNSSVRAAGRVRS
RGLELDLTGQLSERWSLIGSYAWLAAEVTEDPTLEGKRLQNVARNTASLSAVYELGQLFGGDRLRLGGGARY
VGKRPGDPANSFDLPSYTVADAFASYDTRFGGHGVKFQLNVKNLFDRTYYPSSANRLYVAMGEPRQFQLSTT
VEF*
AnnotationID:200GeneID:190
AnnotatorUID: diggins
Modification Date/Time: 2005-03-23 06:06:58
Gene Name:
Confidence Code:3
GeneProduct:putative TonB-dependent receptor
Cell Localization:()
Synonyms:PA0151
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:putative outer membrane ferric siderophore receptor
Functional Category Confidence Code:5
COGs:pfam00593,COG1629
Secondary Functional Category(ies):membrane proteins
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN70179.1|AE016657_4 (AE016791) outer membrane ferric siderophore receptor, putative
           [Pseudomonas putida KT2440]
          Length = 796

 Score = 1024 bits (2647), Expect = 0.0
 Identities = 514/792 (64%), Positives = 613/792 (77%), Gaps = 10/792 (1%)

>gb|AAM86893.1|AE013935_10 (AE013935) putative TonB-dependent outer membrane receptor
           [Yersinia pestis KIM]
          Length = 745

 Score =  678 bits (1750), Expect = 0.0
 Identities = 339/670 (50%), Positives = 460/670 (68%), Gaps = 14/670 (2%)

>gb|AAG58168.1|AE005533_1 (AE005533) putative iron compound receptor [Escherichia coli
           O157:H7 EDL933]
          Length = 713

 Score =  590 bits (1521), Expect = e-167
 Identities = 313/717 (43%), Positives = 443/717 (61%), Gaps = 23/717 (3%)








 
Structural Features:
pfam00593, TonB_dep_Rec, TonB dependent receptor.
CD-Length = 712 residues, 100.0% aligned
Score =  261 bits (667), Expect = 3e-70
Identities = 201/718 (27%), Positives = 286/718 (39%), Gaps = 73/718 (10%)

COG1629, CirA, Outer membrane receptor proteins, mostly Fe transport 
[Inorganic ion transport and metabolism]
CD-Length = 768 residues,  99.5% aligned
Score =  232 bits (592), Expect = 1e-61
Identities = 228/769 (29%), Positives = 320/769 (41%), Gaps = 60/769 (7%)






   
Genomic Context:






   
Comment:


















    ReferenceID:383




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17525




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33524




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:190_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:190
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
329
                           PA0151_tr
                           translation of PA0151
                           795
                           99.11
                           99.37
                           0
                           4058.0
     

     
     
21208
                           gb|AAG03541.1|AE004453_4
                           (AE004453) probable TonB-dependent receptor [Pseudomonas aeruginosa PAO1]
                           795
                           99.11
                           99.37
                           0
                           4058.0
     

     
     
21209
                           gb|AAN70179.1|AE016657_4
                           (AE016791) outer membrane ferric siderophore receptor, putative [Pseudomonas putida KT2440]
                           803
                           64.38
                           76.71
                           15
                           2659.0
     

     
     
21210
                           emb|CAE29871.1|
                           (BX572607) putative TonB-dependent receptor [Rhodopseudomonas palustris CGA009]
                           810
                           50.86
                           65.06
                           49
                           1944.0
     

     
     
21211
                           dbj|BAC53233.1|
                           (AP005964) bll7968 [Bradyrhizobium japonicum USDA 110]
                           808
                           49.13
                           63.61
                           48
                           1905.0
     

     






      

          
GC ORFID: 43192How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0151Glimmer Score: 

          
Start: 5971236Stop: 5973623

          
Length: 2388


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0151 translation of PA0151Homolog Bit Score 1567.0

          
Other Homologs:  psyr_15may02_Scaffold9_revised_gene8175 (ORF: BLASTX 553.0), t_PA0151 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACCCCGTTCCCGCGCTTCGCCCTGCGTACTCTCCCCGCCCTGTTCCTCAGCCTCGGCTGTCTCGCCGCC 
ACCGCGCAGGCCGCCGAGGCGGTTCGCTATCGCTTCAGCCAGGCTGCCGCGCCGCTGGCCCAGGCGCTCAAC 
GCGTTCAGCCGGGCCAGCGGGCAGACGCTGCTCTACACCGCCGAGCTGCCGCCGCAGGCGACCGCCCCGGCA 
TTGCACGGTTCGCTGGACGCGGAGGAGGCGCTGCAACGCCTGCTGCAGGGCAGCGGCCTGCGCGCGCGGCGG 
ATCGACGAGCGCACCCTGACCCTGGAACCGATCCCCGCCAGCGGCGCGCTCGACCTCGATGCCACGACGGTG 
TCCGCCGCCGCCCCGGCGCAGGGCTACCGGCCGGCGGCCAACGCCTCGATCAGCCGCGGCGATGCGCCGCTA 
CTGGAAATCCCCCAGGCGATCAGCGTGGTCCCGGCACAGGCGCTGCAGGACCAGCGCCCGCGCAACCTTGAC 
GACGCGCTGGGCAACATCAGCGGCATCACCCAGGCCAACACCCTCGGCGGTACCCAGGACGCGGTGATGAAA 
CGCGGCTTCGGCGACAACCGCGACGGCTCGATCATGCGCGACGGCATGCCCTCGGTGCAGGGCCGCAATTTC 
ACCGCCACCGCCGACCACGTCGAGGTGCTGAAGGGGCCTGCATCCCTGCTCTATGGCATCCAGGACCCGGGC 
GGGGTGGTCAACGTGGTGAGCAAGAAGCCGCAACTGCAACAAGCCAACGCCCTGACCCTGCGTGGCTCGGCC 
TACGCCCACGGGCGCAACGGCAGCGGCGGCCAGCTCGACTCCACCGGCCCGCTGGGCGACAGCGGACTGGCC 
TACCGGATGATCCTCGATCATGAGGACGAGGATTACTGGCGCGACTTCGGCAAGAGTCGCGAGACGCTGGTG 
ACGCCCTCGCTGGCCTGGTACGGCGAGGACACGACGGTCAACCTGAGCTACGAGCACCGCGAGTTCACCACG 
CCGTTCGACCGTGGCACGGCCATCGACCCGCGTACCAACCGCCCGCTGGACATCCCGCGCAGCCGGCGCCTG 
GACGAGCCCTTCAACATCACCGAGGGCCGTTCCGAGCTGACCCGCCTGGATCTCGAACGGCAGCTCGACGAC 
ACCTGGAAGGCCCACTTCGGCTACGGCTACAGTCGCGAGACCTACGACGACAACCAGGCCCGGGTGATGGCC 
GTGAATGCCGACGGCACCCTGACCCGGCGCATGGACGGCACCCACGGCGCGGTCAGCAGCGACAGCTTCGCC 
ACCCTCGGCCTGAGCGGAACGCTGCAACTGGCCGGGATGCAACATGACCTGCAATTCGGCATGGACCACGAG 
AAGCGCAAGATCTTCCGCGCCGACCTGCTGCGCGACAGCAAGACCAGCCGCTTCGACTACCTCGACCCGGTC 
TATGGCCAGGTGGTGCCGTCGACCCGGGTGGTCGCCGGCGACAGCGACCAGACCGACAAGCTGCGCAGCGAC 
TCGCTGTACTTCCAGGACTCGATCCACCTGGACGAACGCTGGATCCTGGTCGGCGGCGCGCGCTACCAGATC 
TACGACCAGCTCGCCGGGCGCGGCCGGCCGTTCAACGCCAACACCGACATCAACGGGCAGAAATGGGTGCCG 
CGCGGCGGCCTGGTCTACCGCCTGAGCGACGAGGTTTCGCTGTACGGCAGCTACACGCGCTCGTTCAAGCCG 
AACTCGACCATCGCCCCGCTGAGCACCGGCGAGACCATCGATTCGGCGATCCTGCCGGAGGAGGCGACCTCC 
TGGGAGCTGGGCGCCAAGCTGGATGTGCCGGGGCGTCTCAGCGGCACCCTGGCGCTGTTCGACATCCGCAAG 
AAGAACGTGCTGGTCAACGAACTCGACGGTGCCGGCAACAGCAGCGTGCGCGCCGCCGGCCGGGTCCGCTCG 
CGCGGCCTGGAGCTGGACCTCACCGGCCAGCTCAGCGAACGCTGGAGCCTGATCGGCAGCTACGCCTGGCTC 
GCCGCGGAAGTCACCGAGGACCCGACCCTGGAGGGCAAGCGCCTGCAGAACGTGGCGCGCAACACCGCGTCG 
CTGTCGGCGGTCTACGAACTCGGCCAGCTCTTCGGCGGCGACCGCCTGCGCCTGGGCGGCGGCGCGCGCTAC 
GTCGGCAAGCGCCCGGGCGACCCGGCCAATTCCTTCGACCTGCCGTCCTACACCGTGGCCGATGCCTTCGCC 
AGCTACGACACCCGCTTCGGCGGACACGGCGTGAAGTTCCAGCTCAACGTGAAGAACCTGTTCGACCGCACC 
TACTACCCGTCCAGTGCCAATCGCCTGTACGTGGCGATGGGCGAGCCTCGGCAGTTCCAGCTGTCGACGACG 
GTGGAGTTCTGA