ViewGene
Locus Name:
GeneID:
Location:

GeneID:1898
TrivialName: PA14_30460
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_30460
PAO1 Ortholog Locus:PA2600
Sequence Length:1068
Protein Length:355
Start: 2637996
Stop: 2639063
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05988.1|AE004688_10 (AE004688) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 354/355 (99%), Positives = 354/355 (99%)
Sequence:
ATGATCACCGCCACACCGAGTTCCGAGGTGGACCAGCCGTTGGGGGAGGCTGTGGACGCCGGTTTCGTCCGG
CGTTTCGCCCAGGCCCATGAGGACGCCGGCTTCGACCGGGTGCTGGTGGGGTATTTCAGCAATGCCGCCGAG
GGCGCGGTGGTCAGTTCCTTCGTCGCCGCTGCCACCCGGCGCCTTGGCGTTCTCCTGGCCTATCGCCCTGGG
GTGATCGCAGCGCCGCTGGCGGCACGCCAACTGGCCACCTTGGATCAGTTCAGCGAGGGCCGCCTGGCCCTG
AACGTAGTCAGTGGTGGTAACGACGAGGACCTCGCGCGCGATGGCGACTACCTCGACCATGACCGCCGCTAC
GCCCGTACCGACGAATACCTGCAAGCCCTGCGTGCTATCTGGACCGCCACGGGACCGGTGGATTTCGACGGC
GAGTTCTACCGCTTCCAGGGCGCCTCGCCAGCGGTGCGCCCGCGCCAGTCGCCGCACATACCGATCTATTTC
AGTGGCTCCTCCGACGCAGCCATCGAGGTCGCCGCCAGGCACGCCGACACCTACATGCTCTGGGGCGAGCCG
CTGGCCGCGGTCGACGGGCATATCCGCCGAGTGCGCGCCGCCGCCAAGGCCCAGGGACGTGATCCGCGCTTC
TCGGTGTCATTCCGGCCGATCGTCGCGGATACCGAGGAGGCCGCCTGGAAGCGTGCCGCCGAGGTGCTCGAA
CAGGTCCGCGAGAACCGTGCGCGCCTCGGTCTGCCGCTGCGCGACCACCAGCCGCAGAACGTCGGTTCGCAG
CGCCTGCTGGCCGCCGCCGAGCAGGGCGAGGTGCTCGACAGCCGTTTGTGGACCGGCGTGGCCCGGCTGACC
GGGGCGCGCTGGAACTCCACCGCCCTGGTAGGCACCCCCGAGCAGGTTGCCGCTGCGCTTGGCGAGTACTAC
CGGCTGGGCGTCTCGACCTTCCTGATTCGAGGCTTCGATCCGCTCGGCGACGCCGTGCGCTACGGCCAGGGC
CTGATTCCCGCCATACATGACCATATCGCCCGCCTGCCGCTGTTGCGGCACGCCGGTTGA
Translation:
MITATPSSEVDQPLGEAVDAGFVRRFAQAHEDAGFDRVLVGYFSNAAEGAVVSSFVAAATRRLGVLLAYRPG
VIAAPLAARQLATLDQFSEGRLALNVVSGGNDEDLARDGDYLDHDRRYARTDEYLQALRAIWTATGPVDFDG
EFYRFQGASPAVRPRQSPHIPIYFSGSSDAAIEVAARHADTYMLWGEPLAAVDGHIRRVRAAAKAQGRDPRF
SVSFRPIVADTEEAAWKRAAEVLEQVRENRARLGLPLRDHQPQNVGSQRLLAAAEQGEVLDSRLWTGVARLT
GARWNSTALVGTPEQVAAALGEYYRLGVSTFLIRGFDPLGDAVRYGQGLIPAIHDHIARLPLLRHAG*
AnnotationID:1907GeneID:1898
AnnotatorUID: diggins
Modification Date/Time: 2005-03-07 10:10:02
Gene Name:
Confidence Code:3
GeneProduct:putative flavin-dependent oxidoreductase
Cell Localization:()
Synonyms:PA2600
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2141
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO55315.1| (AE016862) alkanesulfonate monooxygenase, putative [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 362

 Score =  347 bits (890), Expect = 6e-95
 Identities = 178/346 (51%), Positives = 232/346 (67%), Gaps = 2/346 (0%)

>gb|AAN68826.1|AE016515_5 (AE016786) alkansulfonate monooxygenase, putative [Pseudomonas
           putida KT2440]
          Length = 366

 Score =  334 bits (857), Expect = 4e-91
 Identities = 181/347 (52%), Positives = 230/347 (66%), Gaps = 12/347 (3%)








 
Structural Features:
COG2141, COG2141, Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase 
and related flavin-dependent oxidoreductases 
[Energy production and conversion]
CD-Length = 336 residues,  96.1% aligned
Score =  166 bits (422), Expect = 3e-42
Identities = 116/340 (34%), Positives = 152/340 (44%), Gaps = 26/340 (7%)






   
Genomic Context:






   
Comment:


















    ReferenceID:3799




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20946




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33170




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1898_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1898
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3347
                           PA2600_tr
                           translation of PA2600
                           355
                           99.71
                           99.71
                           0
                           1807.0
     

     
     
103941
                           gb|AAG05988.1|AE004688_10
                           (AE004688) hypothetical protein PA2600 [Pseudomonas aeruginosa PAO1]
                           355
                           99.71
                           99.71
                           0
                           1807.0
     

     
     
3348
                           PA2598_tr
                           translation of PA2598
                           362
                           51.10
                           66.85
                           9
                           945.0
     

     
     
103942
                           gb|AAG05986.1|AE004688_8
                           (AE004688) hypothetical protein PA2598 [Pseudomonas aeruginosa PAO1]
                           362
                           51.10
                           66.85
                           9
                           945.0
     

     
     
103944
                           gb|AAN68826.1|AE016515_5
                           (AE016786) alkansulfonate monooxygenase, putative [Pseudomonas putida KT2440]
                           375
                           49.06
                           62.66
                           29
                           866.0
     

     






      

          
GC ORFID: 44900How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2600Glimmer Score: 

          
Start: 2315930Stop: 2314863

          
Length: 1068


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2600 translation of PA2600Homolog Bit Score 700.0

          
Other Homologs:  t_PA2598 (ORF: BLASTX 377.0), psyr_15may02_Scaffold8_revised_gene7653 (ORF: BLASTX 357.0), t_PA2600 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGATCACCGCCACACCGAGTTCCGAGGTGGACCAGCCGTTGGGGGAGGCTGTGGACGCCGGTTTCGTCCGG 
CGTTTCGCCCAGGCCCATGAGGACGCCGGCTTCGACCGGGTGCTGGTGGGGTATTTCAGCAATGCCGCCGAG 
GGCGCGGTGGTCAGTTCCTTCGTCGCCGCTGCCACCCGGCGCCTTGGCGTTCTCCTGGCCTATCGCCCTGGG 
GTGATCGCAGCGCCGCTGGCGGCACGCCAACTGGCCACCTTGGATCAGTTCAGCGAGGGCCGCCTGGCCCTG 
AACGTAGTCAGTGGTGGTAACGACGAGGACCTCGCGCGCGATGGCGACTACCTCGACCATGACCGCCGCTAC 
GCCCGTACCGACGAATACCTGCAAGCCCTGCGTGCTATCTGGACCGCCACGGGACCGGTGGATTTCGACGGC 
GAGTTCTACCGCTTCCAGGGCGCCTCGCCAGCGGTGCGCCCGCGCCAGTCGCCGCACATACCGATCTATTTC 
AGTGGCTCCTCCGACGCAGCCATCGAGGTCGCCGCCAGGCACGCCGACACCTACATGCTCTGGGGCGAGCCG 
CTGGCCGCGGTCGACGGGCATATCCGCCGAGTGCGCGCCGCCGCCAAGGCCCAGGGACGTGATCCGCGCTTC 
TCGGTGTCATTCCGGCCGATCGTCGCGGATACCGAGGAGGCCGCCTGGAAGCGTGCCGCCGAGGTGCTCGAA 
CAGGTCCGCGAGAACCGTGCGCGCCTCGGTCTGCCGCTGCGCGACCACCAGCCGCAGAACGTCGGTTCGCAG 
CGCCTGCTGGCCGCCGCCGAGCAGGGCGAGGTGCTCGACAGCCGTTTGTGGACCGGCGTGGCCCGGCTGACC 
GGGGCGCGCTGGAACTCCACCGCCCTGGTAGGCACCCCCGAGCAGGTTGCCGCTGCGCTTGGCGAGTACTAC 
CGGCTGGGCGTCTCGACCTTCCTGATTCGAGGCTTCGATCCGCTCGGCGACGCCGTGCGCTACGGCCAGGGC 
CTGATTCCCGCCATACATGACCATATCGCCCGCCTGCCGCTGTTGCGGCACGCCGGTTGA