ViewGene
Locus Name:
GeneID:
Location:

GeneID:1897
TrivialName: PA14_04220
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_04220
PAO1 Ortholog Locus:PA0323
Sequence Length:1044
Protein Length:347
Start: 378491
Stop: 377448
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03712.1|AE004470_6 (AE004470) probable binding protein component of ABC transporter [Pseudomonas aeruginosa PAO1]
Identities = 345/347 (99%), Positives = 346/347 (99%)
Sequence:
ATGACCTACCGCACACCGCTCACCCTGCTCTTCGCCGCCGGTCTAGCCCTGGGCGGCCAGGCTCGCGCCGAA
GGCACCCTGCACTTCGCCAACTGGTCGGACTACTACCCGCCGGAGTTGCTGAAGAAGTTCGAGAAGGACACC
GGGATCAAGGCCACCCTCGACGCCTACGACAGCAACGAGACGCTGCTGGCCAAGCTCAAGGCCGGGGGCGGC
GCCTACGACGTGGTGGTGCCGTCGGACAGCTTCATAGAGATTTTCGTCAAGGAGGGGCTGCTGCAAAAGCTC
GACAAGAGCCAGTTGCCGAGCCTGGGCAATCTGAAGGAAAACTTCCGGACCCTTGGCTTCGATCCCGGCCAC
GACTACAGCATTCCCTATCTCTGGGGCACCACCGGCTACAGCTACGATACGGCGAAGGTGCCGGGCGGCAGG
CTGGAAGAAAGCTGGAAGCCGTTCTTCGAACCACCAGCCGAGCTGAAAGGCAAGGTGGTGGCGCTGAACTCC
ATCGAGGAACTGTTCATTCCCGCCACCTACTACCTCGGCATCGACGAATGCACCGAGGACGCCAGGGAAGCG
CAGAAGGTCCTCGACCTGCTGCTCAGGCAAAAGCCGGCGCTGGCCATGTACAACAGCGACGGCACCATCGAG
CGCATGGCCGCCGGCGAGGTCGCCATGCACCAGCAGTGGAACGGCGCCTTCCACCGCGCCCACGCCCAACGC
CCCAGCCTCGAATACGTCTATCCGAAGGAAGGCATCCGGCTGTTCATCGACAACTTCGCGATTCCGCGCGAC
GCCAGCAACGTCAAGGAAGCCCACGTCTTCATCGACTGGATGATGCGCCCGGAGAACATCGCCGCCGCCTCC
AACTTCGCCAAGTACAACAACGCCATCGTCGGCTCGGAGAAATTCATGGAGAAGGCGCTGTTCGACGACCCG
GCGATCAACACCCCGCAGGACAAGCTCAACCGCCTGAAGCCGTTCAAGCTCTGCTCGCCGAAAGCCCTGGCG
CTGCGCAGCAAGGTCTGGACCAAGCTTAAGAAATGA
Translation:
MTYRTPLTLLFAAGLALGGQARAEGTLHFANWSDYYPPELLKKFEKDTGIKATLDAYDSNETLLAKLKAGGG
AYDVVVPSDSFIEIFVKEGLLQKLDKSQLPSLGNLKENFRTLGFDPGHDYSIPYLWGTTGYSYDTAKVPGGR
LEESWKPFFEPPAELKGKVVALNSIEELFIPATYYLGIDECTEDAREAQKVLDLLLRQKPALAMYNSDGTIE
RMAAGEVAMHQQWNGAFHRAHAQRPSLEYVYPKEGIRLFIDNFAIPRDASNVKEAHVFIDWMMRPENIAAAS
NFAKYNNAIVGSEKFMEKALFDDPAINTPQDKLNRLKPFKLCSPKALALRSKVWTKLKK*
AnnotationID:1906GeneID:1897
AnnotatorUID: diggins
Modification Date/Time: 2005-03-24 12:12:14
Gene Name:
Confidence Code:3
GeneProduct:putative binding protein component of ABC transporter
Cell Localization:()
Synonyms:PA0323
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:putative spermidine/putrescine-binding periplasmic protein
Functional Category Confidence Code:5
COGs:COG0687
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG0687, PotD, Spermidine/putrescine-binding periplasmic protein 
[Amino acid transport and metabolism]
CD-Length = 363 residues,  96.1% aligned
Score =  293 bits (752), Expect = 2e-80
Identities = 151/349 (43%), Positives = 195/349 (55%), Gaps = 8/349 (2%)






   
Genomic Context:






   
Comment:


















    ReferenceID:3797




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20944




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33669




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1897_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1897
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3345
                           PA0323_tr
                           translation of PA0323
                           347
                           99.42
                           99.71
                           0
                           1810.0
     

     
     
103939
                           gb|AAG03712.1|AE004470_6
                           (AE004470) probable binding protein component of ABC transporter [Pseudomonas aeruginosa PAO1]
                           347
                           99.42
                           99.71
                           0
                           1810.0
     

     
     
3346
                           PA0203_tr
                           translation of PA0203
                           349
                           40.68
                           61.60
                           7
                           717.0
     

     
     
103940
                           gb|AAG03592.1|AE004458_7
                           (AE004458) probable binding protein component of ABC transporter [Pseudomonas aeruginosa PAO1]
                           349
                           40.68
                           61.60
                           7
                           717.0
     

     






      

          
GC ORFID: 44899How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0323Glimmer Score: 

          
Start: 6179833Stop: 6178790

          
Length: 1044


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0323 translation of PA0323Homolog Bit Score 701.0

          
Other Homologs:  t_PA0203 (ORF: BLASTX 280.0), t_PA0323 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACCTACCGCACACCGCTCACCCTGCTCTTCGCCGCCGGTCTAGCCCTGGGCGGCCAGGCTCGCGCCGAA 
GGCACCCTGCACTTCGCCAACTGGTCGGACTACTACCCGCCGGAGTTGCTGAAGAAGTTCGAGAAGGACACC 
GGGATCAAGGCCACCCTCGACGCCTACGACAGCAACGAGACGCTGCTGGCCAAGCTCAAGGCCGGGGGCGGC 
GCCTACGACGTGGTGGTGCCGTCGGACAGCTTCATAGAGATTTTCGTCAAGGAGGGGCTGCTGCAAAAGCTC 
GACAAGAGCCAGTTGCCGAGCCTGGGCAATCTGAAGGAAAACTTCCGGACCCTTGGCTTCGATCCCGGCCAC 
GACTACAGCATTCCCTATCTCTGGGGCACCACCGGCTACAGCTACGATACGGCGAAGGTGCCGGGCGGCAGG 
CTGGAAGAAAGCTGGAAGCCGTTCTTCGAACCACCAGCCGAGCTGAAAGGCAAGGTGGTGGCGCTGAACTCC 
ATCGAGGAACTGTTCATTCCCGCCACCTACTACCTCGGCATCGACGAATGCACCGAGGACGCCAGGGAAGCG 
CAGAAGGTCCTCGACCTGCTGCTCAGGCAAAAGCCGGCGCTGGCCATGTACAACAGCGACGGCACCATCGAG 
CGCATGGCCGCCGGCGAGGTCGCCATGCACCAGCAGTGGAACGGCGCCTTCCACCGCGCCCACGCCCAACGC 
CCCAGCCTCGAATACGTCTATCCGAAGGAAGGCATCCGGCTGTTCATCGACAACTTCGCGATTCCGCGCGAC 
GCCAGCAACGTCAAGGAAGCCCACGTCTTCATCGACTGGATGATGCGCCCGGAGAACATCGCCGCCGCCTCC 
AACTTCGCCAAGTACAACAACGCCATCGTCGGCTCGGAGAAATTCATGGAGAAGGCGCTGTTCGACGACCCG 
GCGATCAACACCCCGCAGGACAAGCTCAACCGCCTGAAGCCGTTCAAGCTCTGCTCGCCGAAAGCCCTGGCG 
CTGCGCAGCAAGGTCTGGACCAAGCTTAAGAAATGA