ViewGene
Locus Name:
GeneID:
Location:

GeneID:1895
TrivialName: PA14_47970
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_47970
PAO1 Ortholog Locus:PA1255
Sequence Length:1035
Protein Length:344
Start: 4270122
Stop: 4271156
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04644.1|AE004555_4 (AE004555) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 340/344 (98%), Positives = 342/344 (99%)
Sequence:
ATGCGTTCGCAGCGGATCGTCCACATCGTCAGTTGCCATGCCGAAGGCGAGGTCGGCGACGTGATCGTCGGC
GGCGTCGCCGCGCCGCCCGGCGCCACCCTCTGGGAACAGTCGCGCTGGATCGCCAGAGACCAGGACCTGCGC
AACTTCGTCCTCAACGAACCGCGCGGCGGAGTGTTCCGCCACGCCAATCTGCTGGTGCCGGCCAAGGACCCG
CGCGCGCAGATGGGCTGGATCATCATGGAGCCGGCCGACACCCCGCCGATGTCCGGTTCCAATTCGCTGTGC
GTGGCCACCGTACTGCTCGACAGCGGCATCCTGCCGATGCGCGAACCGCTGACTCGGCTGCTGCTGGAAGCG
CCGGGCGGGCTGATCGAGGCCCGCGCGGAATGCCGCGACGGCAAGGCCGAGCGGGTGGAAATCCGCAACGTG
CCGTCGTTCGCCGACCGCCTCGACGCCTGGATCGAAGTCGAGGGCCTCGGCTCGCTACAGGTCGACACCGCC
TACGGCGGCGACAGCTTCGTCATCGCCGACGCCCGGCGCCTGGGCTTCGCCCTGCGCGCCGACGAGGCCGCC
GAGCTGGTCGCCACCGGCTTGAAGATCACCCACGCGGCCAACGAACAACTGGGCTTCCACCACCCGACCAAC
CCGGACTGGGACCATCTGTCCTTCTGCCAGCTGGCCGCGCCGCCGGAGCGCCGCGACGGTGTCCTCGGCGCG
AGCAACGCGGTGGTCATCCGCCCCGGCAAGATCGACCGCTCGCCCTGCGGCACCGGCTGCTCGGCGCGGATG
GCGGTGCTCCAGGCGAAAGGTCAGCTGCGGGTCGGCGAACGCTTCGTCGGGCGCTCCATCATCGGTTCGGAA
TTCTACTGCCACATCGAGTCGCTGACCGAACTCGGCGGCCGTCCGGCGATCCTCCCGTGCCTGTCCGGGCGC
GCCTGGATCACCGGCATCCACCAGTACCTGCTCGACCCGGACGATCCCTGGCCGCAAGGCTATCGGCTGTCC
GATACCTGGCCCGACGGCCACTGCTGA
Translation:
MRSQRIVHIVSCHAEGEVGDVIVGGVAAPPGATLWEQSRWIARDQDLRNFVLNEPRGGVFRHANLLVPAKDP
RAQMGWIIMEPADTPPMSGSNSLCVATVLLDSGILPMREPLTRLLLEAPGGLIEARAECRDGKAERVEIRNV
PSFADRLDAWIEVEGLGSLQVDTAYGGDSFVIADARRLGFALRADEAAELVATGLKITHAANEQLGFHHPTN
PDWDHLSFCQLAAPPERRDGVLGASNAVVIRPGKIDRSPCGTGCSARMAVLQAKGQLRVGERFVGRSIIGSE
FYCHIESLTELGGRPAILPCLSGRAWITGIHQYLLDPDDPWPQGYRLSDTWPDGHC*
AnnotationID:1904GeneID:1895
AnnotatorUID: diggins
Modification Date/Time: 2005-05-25 07:07:44
Gene Name:
Confidence Code:3
GeneProduct:putative proline racemase protein
Cell Localization:()
Synonyms:PA1255
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(8) Central intermediary metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3938,pfam05544
Secondary Functional Category(ies):amino acid biosynthesis and metabolism
EC Number:5.1.1.4
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN29286.1|AE014345_7 (AE014345) proline racemase, putative [Brucella suis 1330]
          Length = 342

 Score =  505 bits (1300), Expect = e-142
 Identities = 235/340 (69%), Positives = 281/340 (82%), Gaps = 1/340 (0%)

>emb|CAC48660.1| (AL603642) putative proline racemase protein [Sinorhizobium
           meliloti]
          Length = 342

 Score =  490 bits (1261), Expect = e-138
 Identities = 232/339 (68%), Positives = 273/339 (80%)

>dbj|BAB53035.1| (AP003010) proline racemase [Mesorhizobium loti]
          Length = 346

 Score =  357 bits (917), Expect = 4e-98
 Identities = 185/340 (54%), Positives = 230/340 (67%), Gaps = 3/340 (0%)






 
Structural Features:
COG3938, COG3938, Proline racemase [Amino acid transport and metabolism]
CD-Length = 341 residues,  99.4% aligned
Score =  523 bits (1348), Expect = 1e-149
Identities = 209/341 (61%), Positives = 244/341 (71%), Gaps = 3/341 (0%)

pfam05544, Pro_racemase, Proline racemase.
CD-Length = 325 residues, 100.0% aligned
Score =  474 bits (1221), Expect = 7e-135
Identities = 191/327 (58%), Positives = 226/327 (69%), Gaps = 3/327 (0%)






   
Genomic Context:






   
Comment:


















    ReferenceID:3793




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20940




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37542




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1895_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1895
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3343
                           PA1255_tr
                           translation of PA1255
                           344
                           98.83
                           99.41
                           0
                           1810.0
     

     
     
103774
                           gb|AAG04644.1|AE004555_4
                           (AE004555) hypothetical protein PA1255 [Pseudomonas aeruginosa PAO1]
                           344
                           98.83
                           99.41
                           0
                           1810.0
     

     
     
103775
                           gb|AAN29286.1|AE014345_7
                           (AE014345) proline racemase, putative [Brucella suis 1330]
                           344
                           68.31
                           81.68
                           2
                           1299.0
     

     
     
103776
                           gb|AAL52767.1|
                           (AE009594) PROLINE RACEMASE [Brucella melitensis 16M]
                           344
                           68.02
                           81.39
                           2
                           1293.0
     

     
     
103777
                           emb|CAC48660.1|
                           (AL603642) putative proline racemase protein [Sinorhizobium meliloti]
                           344
                           67.44
                           79.36
                           2
                           1255.0
     

     






      

          
GC ORFID: 44897How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1255Glimmer Score: 

          
Start: 683787Stop: 682753

          
Length: 1035


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1255 translation of PA1255Homolog Bit Score 701.0

          
Other Homologs:  t_PA1255 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGTTCGCAGCGGATCGTCCACATCGTCAGTTGCCATGCCGAAGGCGAGGTCGGCGACGTGATCGTCGGC 
GGCGTCGCCGCGCCGCCCGGCGCCACCCTCTGGGAACAGTCGCGCTGGATCGCCAGAGACCAGGACCTGCGC 
AACTTCGTCCTCAACGAACCGCGCGGCGGAGTGTTCCGCCACGCCAATCTGCTGGTGCCGGCCAAGGACCCG 
CGCGCGCAGATGGGCTGGATCATCATGGAGCCGGCCGACACCCCGCCGATGTCCGGTTCCAATTCGCTGTGC 
GTGGCCACCGTACTGCTCGACAGCGGCATCCTGCCGATGCGCGAACCGCTGACTCGGCTGCTGCTGGAAGCG 
CCGGGCGGGCTGATCGAGGCCCGCGCGGAATGCCGCGACGGCAAGGCCGAGCGGGTGGAAATCCGCAACGTG 
CCGTCGTTCGCCGACCGCCTCGACGCCTGGATCGAAGTCGAGGGCCTCGGCTCGCTACAGGTCGACACCGCC 
TACGGCGGCGACAGCTTCGTCATCGCCGACGCCCGGCGCCTGGGCTTCGCCCTGCGCGCCGACGAGGCCGCC 
GAGCTGGTCGCCACCGGCTTGAAGATCACCCACGCGGCCAACGAACAACTGGGCTTCCACCACCCGACCAAC 
CCGGACTGGGACCATCTGTCCTTCTGCCAGCTGGCCGCGCCGCCGGAGCGCCGCGACGGTGTCCTCGGCGCG 
AGCAACGCGGTGGTCATCCGCCCCGGCAAGATCGACCGCTCGCCCTGCGGCACCGGCTGCTCGGCGCGGATG 
GCGGTGCTCCAGGCGAAAGGTCAGCTGCGGGTCGGCGAACGCTTCGTCGGGCGCTCCATCATCGGTTCGGAA 
TTCTACTGCCACATCGAGTCGCTGACCGAACTCGGCGGCCGTCCGGCGATCCTCCCGTGCCTGTCCGGGCGC 
GCCTGGATCACCGGCATCCACCAGTACCTGCTCGACCCGGACGATCCCTGGCCGCAAGGCTATCGGCTGTCC 
GATACCTGGCCCGACGGCCACTGCTGA