ViewGene
Locus Name:
GeneID:
Location:

GeneID:1894
TrivialName: PA14_51410
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_51410
PAO1 Ortholog Locus:PA0998
Sequence Length:1047
Protein Length:348
Start: 4569078
Stop: 4568032
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04387.1|AE004532_11 (AE004532) Homologous to beta-keto-acyl-acyl-carrier protein synthase [Pseudomonas aeruginosa PAO1]
Identities = 348/348 (100%), Positives = 348/348 (100%)
Sequence:
ATGCATAAGGTCAAACTGGCAGCGATCACCTGTGAACTTCCGGCTCGCAGCTACGAAAACGACGATCCGGTG
TTCGCTGCGGTACCGGACCTCAGCGAGTCTTGGTGGCAATTCTGGGGCGTCAATCGGCGGGGCTATTTCGAC
CCGCGGAACGGCGAGAACGAGTTCAGCCTGGTGGTCCGGGCCGCCGAGCGCCTGCTGCGCAGCAGCGATACT
GCGCCGGATAGCGTGGACATGCTGATCTGTTCGGCTTCCTCGCCGATCATGACCGACGCCGGCGATGTCCTG
CCGGACCTGCGCGGGCGTCTCTATCCGCGCATGGCCAACGTGCTGTCCAAGCAGCTCGGCCTGAGCCGGGCG
CTGCCATTGGATTCGCAGATGGAGTGCGCCAGCTTCCTGCTCAACCTGCGCCTGGCAGCGAGCATGATCCGC
CAGGGCAAGGCCGAGAAAGTGCTGGTGGTGTGCAGCGAGTACATCTCCAACCTGCTCGACTTCACCTCGCGT
ACCTCGACCCTGTTCGCCGATGGCTGCGCGGTGGCCCTGCTGACCCGCGGCGACGACGACAGCTGCGATCTG
CTGGCTTCGGCCGAACACAGCGACGCCACGTTCTATGAAGTGGCCACCGGTCGCTGGCGCCTGCCGGAAAAC
CCGACCGGCGAGGCCAAGCCGCGGCTGTATTTCTCGTTGTTCAGCGACGGCCAGAACAAGATGGCCAGCTTC
GTCCCGACCAACGTGCCGATCGCGATGCGCCGGGCGTTGGAAAAGGCCGGCCTGGGCAGCGATGACATCGAT
TATTTCGTCTTCCACCAGCCAGCGCCGTTCCTGGTCAAGGCCTGGGCCGAGGGCATCGGTGCCCGTCCGGAG
CAGTACCAGCTGACGATGGGCGATACCGGCGTGATGATCTCCGTTTCCATCCCGTACACCCTGATGACCGGC
CTGCGCGAGGGCAAGATCCGCCCCGGCGATCGTATCGTCATGGCCGGCGCAGCCACCGGCTGGGGTTTCGCC
GCCCAGGTCTGGCAATTGGGCGAGGTGCTGGTGTGCTGA
Translation:
MHKVKLAAITCELPARSYENDDPVFAAVPDLSESWWQFWGVNRRGYFDPRNGENEFSLVVRAAERLLRSSDT
APDSVDMLICSASSPIMTDAGDVLPDLRGRLYPRMANVLSKQLGLSRALPLDSQMECASFLLNLRLAASMIR
QGKAEKVLVVCSEYISNLLDFTSRTSTLFADGCAVALLTRGDDDSCDLLASAEHSDATFYEVATGRWRLPEN
PTGEAKPRLYFSLFSDGQNKMASFVPTNVPIAMRRALEKAGLGSDDIDYFVFHQPAPFLVKAWAEGIGARPE
QYQLTMGDTGVMISVSIPYTLMTGLREGKIRPGDRIVMAGAATGWGFAAQVWQLGEVLVC*
AnnotationID:1903GeneID:1894
AnnotatorUID: danlee
Modification Date/Time: 2004-05-14 17:05:58
Gene Name:pqsC
Confidence Code:1
GeneProduct:Homologous to beta-keto-acyl-acyl-carrier protein synthase
Cell Localization:()
Synonyms:PA0998
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(21) Quinolone signal response
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0332
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG0332, FabH, 3-oxoacyl-[acyl-carrier-protein]
        CD-Length = 323 residues, 100.0% aligned
        Score =  259 bits (663), Expect = 4e-70






   
Genomic Context:
part of pqsABCDE operon 






   
Comment:


















    ReferenceID:3791




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20938




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32101




  
Author/Investigator(s):
        Gallagher LA, McKnight SL, Kuznetsova MS, Pesci EC, Manoil C.





  
Title:
        Functions required for extracellular quinolone signaling by Pseudomonas aeruginosa.




  
PubMed:
        12426334


MedLine:
        




    
Source:
J Bacteriol. 2002 Dec;184(23):6472-80.






    
Reference Type:Journal 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1894
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3342
                           PA0998_tr
                           translation of PA0998
                           348
                           99.99
                           99.99
                           0
                           1810.0
     

     
     
103773
                           gb|AAG04387.1|AE004532_11
                           (AE004532) Homologous to beta-keto-acyl-acyl-carrier protein synthase [Pseudomonas aeruginosa PAO1]
                           348
                           99.99
                           99.99
                           0
                           1810.0
     

     






      

          
GC ORFID: 44896How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0998Glimmer Score: 

          
Start: 384829Stop: 385875

          
Length: 1047


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0998 translation of PA0998Homolog Bit Score 701.0

          
Other Homologs:  t_PA0998 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCATAAGGTCAAACTGGCAGCGATCACCTGTGAACTTCCGGCTCGCAGCTACGAAAACGACGATCCGGTG 
TTCGCTGCGGTACCGGACCTCAGCGAGTCTTGGTGGCAATTCTGGGGCGTCAATCGGCGGGGCTATTTCGAC 
CCGCGGAACGGCGAGAACGAGTTCAGCCTGGTGGTCCGGGCCGCCGAGCGCCTGCTGCGCAGCAGCGATACT 
GCGCCGGATAGCGTGGACATGCTGATCTGTTCGGCTTCCTCGCCGATCATGACCGACGCCGGCGATGTCCTG 
CCGGACCTGCGCGGGCGTCTCTATCCGCGCATGGCCAACGTGCTGTCCAAGCAGCTCGGCCTGAGCCGGGCG 
CTGCCATTGGATTCGCAGATGGAGTGCGCCAGCTTCCTGCTCAACCTGCGCCTGGCAGCGAGCATGATCCGC 
CAGGGCAAGGCCGAGAAAGTGCTGGTGGTGTGCAGCGAGTACATCTCCAACCTGCTCGACTTCACCTCGCGT 
ACCTCGACCCTGTTCGCCGATGGCTGCGCGGTGGCCCTGCTGACCCGCGGCGACGACGACAGCTGCGATCTG 
CTGGCTTCGGCCGAACACAGCGACGCCACGTTCTATGAAGTGGCCACCGGTCGCTGGCGCCTGCCGGAAAAC 
CCGACCGGCGAGGCCAAGCCGCGGCTGTATTTCTCGTTGTTCAGCGACGGCCAGAACAAGATGGCCAGCTTC 
GTCCCGACCAACGTGCCGATCGCGATGCGCCGGGCGTTGGAAAAGGCCGGCCTGGGCAGCGATGACATCGAT 
TATTTCGTCTTCCACCAGCCAGCGCCGTTCCTGGTCAAGGCCTGGGCCGAGGGCATCGGTGCCCGTCCGGAG 
CAGTACCAGCTGACGATGGGCGATACCGGCGTGATGATCTCCGTTTCCATCCCGTACACCCTGATGACCGGC 
CTGCGCGAGGGCAAGATCCGCCCCGGCGATCGTATCGTCATGGCCGGCGCAGCCACCGGCTGGGGTTTCGCC 
GCCCAGGTCTGGCAATTGGGCGAGGTGCTGGTGTGCTGA