ViewGene
Locus Name:
GeneID:
Location:

GeneID:1893
TrivialName: PA14_07870
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_07870
PAO1 Ortholog Locus:PA0604
Sequence Length:1047
Protein Length:348
Start: 678769
Stop: 679815
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03993.1|AE004496_9 (AE004496) probable binding protein component of ABC transporter [Pseudomonas aeruginosa PAO1]
Identities = 347/348 (99%), Positives = 348/348 (100%)
Sequence:
ATGTCGAAATCCCTGAAAGCGGCCAGCCTGAAGTTCGCCACCCTGGCGGCCGGCCTGGCCTGCGCGGCCCAG
GCCATGGCGGTGGACCTGACCGTGGTGTCCTTCGGCGGGGCCAACAAGAGCGCCCAGATCAAGGCGTTCTAC
GAGCCCTACCAGAAAGCCACCGGCAACAGGATCGTTGCCGGCGAATACAACGGCGAGATGGCCAAGGTCAAG
GCCATGGTCGATACCAACAGCGTCTCCTGGGACCTGGTGGAAGTGGAGTCGCCGGAGCTGTCGCGCGGCTGC
GACGAAGGCCTGTTCGAGGAACTCGACCCGGCGCAGTTCGGTAAGACCGAGGACTTCGTGCCCGGCGCCATC
CAACCGTGCGGCGTGGGTTTCTTCGTCTGGTCCACGGTGCTCGCCTACAACGCCGACAAGCTGAAAAGCGCG
CCGACCAGTTGGGCGGACTTCTGGGACATCAAGAAATTCCCCGGCAAGCGCGGCCTGCGCAAGGGCGCCAAG
TACACCCTCGAATTCGCCCTGATGGCCGATGGCGTGGCGCCGAAGGACGTCTACGGCGTGCTCGCCACCAAG
GAAGGCCAGGATCGTGCCTTCAAGAAGCTCGACGAGATCAAGTCGAGCATCCAGTGGTGGGAGGCGGGCGCC
CAGCCGCCGCAGTACCTGGCTTCCGGCGATGTGGTGATGAGTTCTGCCTACAACGGTCGGATCGCCGCGGTG
CAGAAGGAAAGCAACCTGAAGGTGGTATGGAACGGCGGCATCTACGATTTCGACGCCTGGGCCATCCCGAAG
GGGGCGAAGAAACAGGAAGAGACCCTGAAGTTCATCGCCTTCTCGGTGCAGCCCCAGCAGCAGAAGACTTAC
TCGGAAAACATCGCCTACGGTCCGGCCAACAAGCAGGCGGTGCCGCTGCTGGACAAGGCCCTGCTGAAGGAC
ATGCCGACCACTCCGGAAAACATCCAGAACCAGGTGGCAATGGACGTGACCTTCTGGGCCGACTACGGCGAA
CAACTGGAACAGCGCTTCAACGCCTGGGCGGCCAGGTAA
Translation:
MSKSLKAASLKFATLAAGLACAAQAMAVDLTVVSFGGANKSAQIKAFYEPYQKATGNRIVAGEYNGEMAKVK
AMVDTNSVSWDLVEVESPELSRGCDEGLFEELDPAQFGKTEDFVPGAIQPCGVGFFVWSTVLAYNADKLKSA
PTSWADFWDIKKFPGKRGLRKGAKYTLEFALMADGVAPKDVYGVLATKEGQDRAFKKLDEIKSSIQWWEAGA
QPPQYLASGDVVMSSAYNGRIAAVQKESNLKVVWNGGIYDFDAWAIPKGAKKQEETLKFIAFSVQPQQQKTY
SENIAYGPANKQAVPLLDKALLKDMPTTPENIQNQVAMDVTFWADYGEQLEQRFNAWAAR*
AnnotationID:1902GeneID:1893
AnnotatorUID: diggins
Modification Date/Time: 2005-03-29 12:12:43
Gene Name:
Confidence Code:3
GeneProduct:putative binding protein component of ABC transporter
Cell Localization:()
Synonyms:PA0604
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:putative polyamine ABC transporter, periplasmic polyamine-binding
Functional Category Confidence Code:5
COGs:COG0687
Secondary Functional Category(ies):membrane proteins
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN66042.1|AE016233_8 (AE016775) polyamine ABC transporter, periplasmic polyamine-binding
           protein [Pseudomonas putida KT2440]
          Length = 344

 Score =  582 bits (1499), Expect = e-165
 Identities = 281/339 (82%), Positives = 304/339 (89%)

>gb|AAO54105.1| (AE016857) polyamine ABC transporter, periplasmic polyamine-binding
           protein [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 344

 Score =  554 bits (1427), Expect = e-157
 Identities = 267/341 (78%), Positives = 293/341 (85%), Gaps = 1/341 (0%)

>gb|AAM84963.1|AE013742_5 (AE013742) putative substrate-binding protein of ABC transporter
           [Yersinia pestis KIM]
          Length = 342

 Score =  377 bits (969), Expect = e-104
 Identities = 180/340 (52%), Positives = 235/340 (69%), Gaps = 3/340 (0%)






 
Structural Features:
COG0687, PotD, Spermidine/putrescine-binding periplasmic protein 
[Amino acid transport and metabolism]
CD-Length = 363 residues,  98.9% aligned
Score =  207 bits (527), Expect = 2e-54
Identities = 104/374 (27%), Positives = 157/374 (41%), Gaps = 43/374 (11%)








   
Genomic Context:






   
Comment:


















    ReferenceID:3789




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20936




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33901




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1893_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1893
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3338
                           PA0604_tr
                           translation of PA0604
                           348
                           99.71
                           99.99
                           0
                           1811.0
     

     
     
103757
                           gb|AAG03993.1|AE004496_9
                           (AE004496) probable binding protein component of ABC transporter [Pseudomonas aeruginosa PAO1]
                           348
                           99.71
                           99.99
                           0
                           1811.0
     

     
     
103758
                           gb|AAN66042.1|AE016233_8
                           (AE016775) polyamine ABC transporter, periplasmic polyamine-binding protein [Pseudomonas putida KT2440]
                           349
                           80.51
                           87.10
                           6
                           1496.0
     

     
     
103759
                           gb|AAO54105.1|
                           (AE016857) polyamine ABC transporter, periplasmic polyamine-binding protein [Pseudomonas syringae pv. tomato str. DC3000]
                           349
                           77.07
                           84.52
                           6
                           1426.0
     

     
     
3340
                           PA0222_tr
                           translation of PA0222
                           352
                           60.79
                           75.56
                           4
                           1126.0
     

     






      

          
GC ORFID: 44895How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0604Glimmer Score: 

          
Start: 6480112Stop: 6481158

          
Length: 1047


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA0604 translation of PA0604Homolog Bit Score 702.0

          
Other Homologs:  psyr_15may02_Scaffold13_revised_gene2135 (ORF: BLASTX 555.0), t_PA0602 (ORF: BLASTX 443.0), t_PA0222 (ORF: BLASTX 436.0), t_PA0604 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCGAAATCCCTGAAAGCGGCCAGCCTGAAGTTCGCCACCCTGGCGGCCGGCCTGGCCTGCGCGGCCCAG 
GCCATGGCGGTGGACCTGACCGTGGTGTCCTTCGGCGGGGCCAACAAGAGCGCCCAGATCAAGGCGTTCTAC 
GAGCCCTACCAGAAAGCCACCGGCAACAGGATCGTTGCCGGCGAATACAACGGCGAGATGGCCAAGGTCAAG 
GCCATGGTCGATACCAACAGCGTCTCCTGGGACCTGGTGGAAGTGGAGTCGCCGGAGCTGTCGCGCGGCTGC 
GACGAAGGCCTGTTCGAGGAACTCGACCCGGCGCAGTTCGGTAAGACCGAGGACTTCGTGCCCGGCGCCATC 
CAACCGTGCGGCGTGGGTTTCTTCGTCTGGTCCACGGTGCTCGCCTACAACGCCGACAAGCTGAAAAGCGCG 
CCGACCAGTTGGGCGGACTTCTGGGACATCAAGAAATTCCCCGGCAAGCGCGGCCTGCGCAAGGGCGCCAAG 
TACACCCTCGAATTCGCCCTGATGGCCGATGGCGTGGCGCCGAAGGACGTCTACGGCGTGCTCGCCACCAAG 
GAAGGCCAGGATCGTGCCTTCAAGAAGCTCGACGAGATCAAGTCGAGCATCCAGTGGTGGGAGGCGGGCGCC 
CAGCCGCCGCAGTACCTGGCTTCCGGCGATGTGGTGATGAGTTCTGCCTACAACGGTCGGATCGCCGCGGTG 
CAGAAGGAAAGCAACCTGAAGGTGGTATGGAACGGCGGCATCTACGATTTCGACGCCTGGGCCATCCCGAAG 
GGGGCGAAGAAACAGGAAGAGACCCTGAAGTTCATCGCCTTCTCGGTGCAGCCCCAGCAGCAGAAGACTTAC 
TCGGAAAACATCGCCTACGGTCCGGCCAACAAGCAGGCGGTGCCGCTGCTGGACAAGGCCCTGCTGAAGGAC 
ATGCCGACCACTCCGGAAAACATCCAGAACCAGGTGGCAATGGACGTGACCTTCTGGGCCGACTACGGCGAA 
CAACTGGAACAGCGCTTCAACGCCTGGGCGGCCAGGTAA