ViewGene
Locus Name:
GeneID:
Location:

GeneID:1891
TrivialName: PA14_21960
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_21960
PAO1 Ortholog Locus:PA3250
Sequence Length:1059
Protein Length:352
Start: 1910608
Stop: 1909550
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06638.1|AE004747_11 (AE004747) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 352/352 (100%), Positives = 352/352 (100%)
Sequence:
ATGAAACGCATGCTTGCTTCATTGCTGGGAACCGCCATCGCCCTCGGCAGCGGCCTGGCGTTGGCCGCCGAA
GCGGACCTGCAGGCGCTGGAACAGGCCGCGCGCAAGGAAGGCCAGGTCAACAGCGTCGGCATGCCCGACAGC
TGGGCGAACTGGAAGGACACCTGGAAGGACCTTGAGAGCAAGTATGGGCTCAAGCACATGGATACCGACATG
AGTTCGGCCCAGGAGCTGGCCAAGTTCAAGGCCGAGAAGGACAACGCCAGCGCCGACATCGGCGACGTCGGC
GCCGCCTTCGGCCCCATCGCCGTGCAGCAGGGCGTCAGCCAGCCGTACAAGCCGAGCACCTGGGAACAGATC
CCGGCCTGGGCCAAAGACCAGGACGGCCACTGGGCGCTCGCCTACACCGGGACCATCGCCTTCATCGTCAAC
AAACAACTGGTGAAGGACGTACCGCACAGCTGGGCCGACCTGCTGCAGGGCAAGTACAAGGTCACCATCGGC
GACGTCAGCGCTGCCGCCCAGGCGGTCAATGGGGTGCTCGCCGCGGCCATCGCCAACGGCGGCGACGAGAAG
AACATCAAGCCGGGCCTGGAGTTCTTCGGCAAGATCGCCAAGCAGGGCCGCCTGTCGCTGACCAACCCGGTG
ATCGCCACCCTGGAAAAGGGCGAGGTCGAAGTCGGCATCGTCTGGGACTTCAACGGCCTCAGCTACCGCCAG
CAGATCGACCCGGAGCGCTTCGAGGTGCTGATCCCCTCGGACGGCTCGGTGATCTCCGGCTACACCACCATC
ATCAACAAGTACGCCAAGCACCCGAACGCCGCCAAGCTCGCCCGCGAGTACATCTTCAGCGACGCCGGACAG
ATCAACCTGGCCAAGGGCAACGCGCGACCGATCCGCGCCGAGAGCCTGACCCTGCCGGACGACGTGAAGGCC
CAACTGCTGCCCAACGAGCAGTACGCCAAGGCCCAGCCGATCAAGGACGCCAAGGCCTGGGAGGAAACCTCC
AAGCGCCTGCCGCGGCAGTGGCAGGAAGCGGTGATCATCAACATGCAGTGA
Translation:
MKRMLASLLGTAIALGSGLALAAEADLQALEQAARKEGQVNSVGMPDSWANWKDTWKDLESKYGLKHMDTDM
SSAQELAKFKAEKDNASADIGDVGAAFGPIAVQQGVSQPYKPSTWEQIPAWAKDQDGHWALAYTGTIAFIVN
KQLVKDVPHSWADLLQGKYKVTIGDVSAAAQAVNGVLAAAIANGGDEKNIKPGLEFFGKIAKQGRLSLTNPV
IATLEKGEVEVGIVWDFNGLSYRQQIDPERFEVLIPSDGSVISGYTTIINKYAKHPNAAKLAREYIFSDAGQ
INLAKGNARPIRAESLTLPDDVKAQLLPNEQYAKAQPIKDAKAWEETSKRLPRQWQEAVIINMQ*
AnnotationID:1900GeneID:1891
AnnotatorUID: diggins
Modification Date/Time: 2005-04-14 14:02:11
Gene Name:
Confidence Code:3
GeneProduct:putative ABC transporter, periplasmic substrate-binding protein
Cell Localization:()
Synonyms:PA3250
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1840,COG0687
Secondary Functional Category(ies):amino acid biosynthesis and metabolims
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN67347.1|AE016361_1 (AE016780) ABC transporter, periplasmic binding protein
           [Pseudomonas putida KT2440]
          Length = 354

 Score =  556 bits (1432), Expect = e-158
 Identities = 276/353 (78%), Positives = 309/353 (87%), Gaps = 3/353 (0%)

>gb|AAO57344.1| (AE016870) ABC transporter, periplasmic substrate-binding protein
           [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 355

 Score =  519 bits (1336), Expect = e-146
 Identities = 256/351 (72%), Positives = 297/351 (84%), Gaps = 4/351 (1%)

>dbj|BAC61697.1| (AP005085) putative periplasmic solute-binding protein [Vibrio
           parahaemolyticus]
          Length = 360

 Score =  487 bits (1254), Expect = e-137
 Identities = 236/346 (68%), Positives = 285/346 (82%), Gaps = 2/346 (0%)






 
Structural Features:
COG1840, AfuA, ABC-type Fe3+ transport system, periplasmic component 
[Inorganic ion transport and metabolism]
CD-Length = 299 residues, 100.0% aligned
Score =  158 bits (401), Expect = 7e-40
Identities = 83/305 (27%), Positives = 126/305 (41%), Gaps = 15/305 (4%)

COG0687, PotD, Spermidine/putrescine-binding periplasmic protein 
[Amino acid transport and metabolism]
CD-Length = 363 residues,  97.8% aligned
Score = 80.5 bits (198), Expect = 3e-16
Identities = 79/369 (21%), Positives = 128/369 (34%), Gaps = 36/369 (9%)






   
Genomic Context:






   
Comment:


















    ReferenceID:3785




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20932




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32293




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1891_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1891
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3336
                           PA3250_tr
                           translation of PA3250
                           352
                           99.99
                           99.99
                           0
                           1813.0
     

     
     
103581
                           gb|AAG06638.1|AE004747_11
                           (AE004747) hypothetical protein PA3250 [Pseudomonas aeruginosa PAO1]
                           352
                           99.99
                           99.99
                           0
                           1813.0
     

     
     
103582
                           gb|AAN67347.1|AE016361_1
                           (AE016780) ABC transporter, periplasmic binding protein [Pseudomonas putida KT2440]
                           355
                           78.02
                           87.60
                           4
                           1436.0
     

     
     
103583
                           gb|AAO57344.1|
                           (AE016870) ABC transporter, periplasmic substrate-binding protein [Pseudomonas syringae pv. tomato str. DC3000]
                           356
                           72.47
                           83.98
                           5
                           1342.0
     

     
     
103584
                           dbj|BAC61697.1|
                           (AP005085) putative periplasmic solute-binding protein [Vibrio parahaemolyticus]
                           361
                           66.20
                           80.33
                           10
                           1259.0
     

     






      

          
GC ORFID: 44893How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3250Glimmer Score: 

          
Start: 3043323Stop: 3044381

          
Length: 1059


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3250 translation of PA3250Homolog Bit Score 702.0

          
Other Homologs:  psyr_15may02_Scaffold16_revised_gene2676 (ORF: BLASTX 519.0), t_PA3250 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAACGCATGCTTGCTTCATTGCTGGGAACCGCCATCGCCCTCGGCAGCGGCCTGGCGTTGGCCGCCGAA 
GCGGACCTGCAGGCGCTGGAACAGGCCGCGCGCAAGGAAGGCCAGGTCAACAGCGTCGGCATGCCCGACAGC 
TGGGCGAACTGGAAGGACACCTGGAAGGACCTTGAGAGCAAGTATGGGCTCAAGCACATGGATACCGACATG 
AGTTCGGCCCAGGAGCTGGCCAAGTTCAAGGCCGAGAAGGACAACGCCAGCGCCGACATCGGCGACGTCGGC 
GCCGCCTTCGGCCCCATCGCCGTGCAGCAGGGCGTCAGCCAGCCGTACAAGCCGAGCACCTGGGAACAGATC 
CCGGCCTGGGCCAAAGACCAGGACGGCCACTGGGCGCTCGCCTACACCGGGACCATCGCCTTCATCGTCAAC 
AAACAACTGGTGAAGGACGTACCGCACAGCTGGGCCGACCTGCTGCAGGGCAAGTACAAGGTCACCATCGGC 
GACGTCAGCGCTGCCGCCCAGGCGGTCAATGGGGTGCTCGCCGCGGCCATCGCCAACGGCGGCGACGAGAAG 
AACATCAAGCCGGGCCTGGAGTTCTTCGGCAAGATCGCCAAGCAGGGCCGCCTGTCGCTGACCAACCCGGTG 
ATCGCCACCCTGGAAAAGGGCGAGGTCGAAGTCGGCATCGTCTGGGACTTCAACGGCCTCAGCTACCGCCAG 
CAGATCGACCCGGAGCGCTTCGAGGTGCTGATCCCCTCGGACGGCTCGGTGATCTCCGGCTACACCACCATC 
ATCAACAAGTACGCCAAGCACCCGAACGCCGCCAAGCTCGCCCGCGAGTACATCTTCAGCGACGCCGGACAG 
ATCAACCTGGCCAAGGGCAACGCGCGACCGATCCGCGCCGAGAGCCTGACCCTGCCGGACGACGTGAAGGCC 
CAACTGCTGCCCAACGAGCAGTACGCCAAGGCCCAGCCGATCAAGGACGCCAAGGCCTGGGAGGAAACCTCC 
AAGCGCCTGCCGCGGCAGTGGCAGGAAGCGGTGATCATCAACATGCAGTGA