ViewGene

Locus Name:
GeneID:
Location:

GeneID:1890
TrivialName: PA14_23250
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_23250
PAO1 Ortholog Locus:PA3169
Sequence Length:1077
Protein Length:358
Start: 2013441
Stop: 2014517
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06557.1|AE004741_2 (AE004741) probable initiation factor 2 subunit [Pseudomonas aeruginosa PAO1]
Identities = 358/358 (100%), Positives = 358/358 (100%)
Sequence:
ATGCGAGAGCGACTGCTGGCGGCCGAGCGGGTCAAGGCGATCGAGTGGCGGGACGGTACGCTGCGGTTGCTG
GATCAGCGCCTGCTGCCCCAGGAGGAGGTCTGGCTCGAACATGAGTCGGCGGCCGAGGTGGCCAAGGCCATT
CGCGATATGGTCGTGCGCGGCGCGCCGGCCATCGGCATCAGCGCCGCCTACGGCATCGTCCTTGGCGCCCGC
GCGCGCCTGGCGCAGGGCGGCGACTGGCGCGCCGCGCTGGAGGAGGACTTCCGCCTGCTGGCCGACTCGCGA
CCCACGGCGGTCAACCTGTTCTGGGCGCTGAACCGCATGCGCGACCGTCTGGAGCGAATGAAAGAGGGCGAC
CAGCCGCTGGCGGTGCTGGAAGCCGAGGCGATCTCCATCCATGAAAGCGACCGCGAGGCCAACCTGACCATG
GCCCAGTTGGGCATGGAGCTGATCCGCAAGCAGCAGGGCAGCCCGCAGAACATCCTCACCCACTGCAATACC
GGCGCCCTGGCGACCGGCGGGTTCGGCACCGCGCTGGGGGTGATCCGCGCCGCGCACCTGGAAGGCCTGGTC
AATCGCATCTACGCCGACGAAACCCGGCCCTGGCTCCAGGGCTCGCGGCTGACCGCTTGGGAACTGGCCAAC
GAAGGCATCCCGGTCAGCCTGAACGTGGATTCGGCCGCCGCGCACCTGATGAAGACCGAGAACATCACCTGG
GTCATCGTCGGCGCCGACCGCATCACCGCCAATGGCGATGTCGCCAACAAGATCGGCACCTACCAGTTGGCA
GTCAACGCCATGCACCACGGCGTGCGCTTCATGGTGGTGGCGCCGAGTTCGACCATCGACATGAACCTGGAG
AGCGGCGAGGACATCCCGATCGAAGAGCGCGACGGTCGCGAACTGCTGGAAATCGGCGGGCGACGGGTGGCG
GCCGAGGTCGATGCCTACAATCCGGTATTCGACGTGACCCCGGCGGACCTTATCGATGCCATCGTGACCGAG
CGTGGCGTCGTCGAGCGTCCCGACGCCGAGCGCATGGCCGCCCTGATGAGCCGCAAGCGCCTGCATTGA
Translation:
MRERLLAAERVKAIEWRDGTLRLLDQRLLPQEEVWLEHESAAEVAKAIRDMVVRGAPAIGISAAYGIVLGAR
ARLAQGGDWRAALEEDFRLLADSRPTAVNLFWALNRMRDRLERMKEGDQPLAVLEAEAISIHESDREANLTM
AQLGMELIRKQQGSPQNILTHCNTGALATGGFGTALGVIRAAHLEGLVNRIYADETRPWLQGSRLTAWELAN
EGIPVSLNVDSAAAHLMKTENITWVIVGADRITANGDVANKIGTYQLAVNAMHHGVRFMVVAPSSTIDMNLE
SGEDIPIEERDGRELLEIGGRRVAAEVDAYNPVFDVTPADLIDAIVTERGVVERPDAERMAALMSRKRLH*
AnnotationID:1899GeneID:1890
AnnotatorUID: diggins
Modification Date/Time: 2005-04-13 13:01:52
Gene Name:
Confidence Code:3
GeneProduct:putative initiation factor 2 subunit
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(26) Translation, post-translational modification, degradation
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam01008,COG0182
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAO55264.1| (AE016862) initiation factor 2 subunit family [Pseudomonas syringae
           pv. tomato str. DC3000]
          Length = 358

 Score =  586 bits (1511), Expect = e-167
 Identities = 292/358 (81%), Positives = 324/358 (90%)

>gb|AAN67386.1|AE016365_1 (AE016780) initiation factor 2 subunit family [Pseudomonas putida
           KT2440]
          Length = 358

 Score =  505 bits (1300), Expect = e-142
 Identities = 252/358 (70%), Positives = 296/358 (82%)

>gb|AAF85350.1|AE004062_5 (AE004062) initiation factor eIF-2B, alpha subunit-related [Xylella
           fastidiosa 9a5c]
          Length = 354

 Score =  332 bits (852), Expect = 2e-90
 Identities = 188/344 (54%), Positives = 231/344 (67%), Gaps = 8/344 (2%)

Structural Features:
pfam01008, IF-2B, Initiation factor 2 subunit family. 
CD-Length = 304 residues,  97.0% aligned
Score =  271 bits (693), Expect = 1e-73
Identities = 141/301 (46%), Positives = 178/301 (59%), Gaps = 9/301 (2%)

COG0182, Predicted translation initiation factor 2B subunit, 
eIF-2B alpha/beta/delta family 
[Translation, ribosomal structure and biogenesis]
CD-Length = 346 residues,  99.7% aligned
Score =  465 bits (1197), Expect = 5e-132
Identities = 198/349 (56%), Positives = 250/349 (71%), Gaps = 8/349 (2%)
Genomic Context:
Comment:
ReferenceID:3783
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:20930
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:32373
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:1890_cdd.html
URL:
Homologs By Global Alignment
Gene ID:1890

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
3335 PA3169_tr translation of PA3169 358 99.99 99.99 0 1811.0
103536 gb|AAG06557.1|AE004741_2 (AE004741) probable initiation factor 2 subunit [Pseudomonas aeruginosa PAO1] 358 99.99 99.99 0 1811.0
103537 gb|AAO55264.1| (AE016862) initiation factor 2 subunit family [Pseudomonas syringae pv. tomato str. DC3000] 358 81.56 90.50 0 1511.0
103538 gb|AAN67386.1|AE016365_1 (AE016780) initiation factor 2 subunit family [Pseudomonas putida KT2440] 358 70.39 82.68 0 1300.0
103540 gb|AAF85350.1|AE004062_5 (AE004062) initiation factor eIF-2B, alpha subunit-related [Xylella fastidiosa 9a5c] 364 52.19 63.46 16 852.0
GC ORFID: 44892How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA3169Glimmer Score:
Start: 2940490Stop: 2939414
Length: 1077
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA3169 translation of PA3169Homolog Bit Score 702.0
Other Homologs: psyr_15may02_Scaffold8_revised_gene7728 (ORF: BLASTX 585.0), t_PA3169 (ORF: GLIMMER)
GC ORF Sequence
ATGCGAGAGCGACTGCTGGCGGCCGAGCGGGTCAAGGCGATCGAGTGGCGGGACGGTACGCTGCGGTTGCTG
GATCAGCGCCTGCTGCCCCAGGAGGAGGTCTGGCTCGAACATGAGTCGGCGGCCGAGGTGGCCAAGGCCATT
CGCGATATGGTCGTGCGCGGCGCGCCGGCCATCGGCATCAGCGCCGCCTACGGCATCGTCCTTGGCGCCCGC
GCGCGCCTGGCGCAGGGCGGCGACTGGCGCGCCGCGCTGGAGGAGGACTTCCGCCTGCTGGCCGACTCGCGA
CCCACGGCGGTCAACCTGTTCTGGGCGCTGAACCGCATGCGCGACCGTCTGGAGCGAATGAAAGAGGGCGAC
CAGCCGCTGGCGGTGCTGGAAGCCGAGGCGATCTCCATCCATGAAAGCGACCGCGAGGCCAACCTGACCATG
GCCCAGTTGGGCATGGAGCTGATCCGCAAGCAGCAGGGCAGCCCGCAGAACATCCTCACCCACTGCAATACC
GGCGCCCTGGCGACCGGCGGGTTCGGCACCGCGCTGGGGGTGATCCGCGCCGCGCACCTGGAAGGCCTGGTC
AATCGCATCTACGCCGACGAAACCCGGCCCTGGCTCCAGGGCTCGCGGCTGACCGCTTGGGAACTGGCCAAC
GAAGGCATCCCGGTCAGCCTGAACGTGGATTCGGCCGCCGCGCACCTGATGAAGACCGAGAACATCACCTGG
GTCATCGTCGGCGCCGACCGCATCACCGCCAATGGCGATGTCGCCAACAAGATCGGCACCTACCAGTTGGCA
GTCAACGCCATGCACCACGGCGTGCGCTTCATGGTGGTGGCGCCGAGTTCGACCATCGACATGAACCTGGAG
AGCGGCGAGGACATCCCGATCGAAGAGCGCGACGGTCGCGAACTGCTGGAAATCGGCGGGCGACGGGTGGCG
GCCGAGGTCGATGCCTACAATCCGGTATTCGACGTGACCCCGGCGGACCTTATCGATGCCATCGTGACCGAG
CGTGGCGTCGTCGAGCGTCCCGACGCCGAGCGCATGGCCGCCCTGATGAGCCGCAAGCGCCTGCATTGA