ViewGene
Locus Name:
GeneID:
Location:

GeneID:189
TrivialName: PA14_62350
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_62350
PAO1 Ortholog Locus:PA4710
Sequence Length:2295
Protein Length:764
Start: 5561148
Stop: 5563442
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08096.1|AE004885_1 (AE004885) Haem/Haemoglobin uptake outer membrane receptor PhuR precursor [Pseudomonas aeruginosa PAO1]
Identities = 763/764 (99%), Positives = 763/764 (99%)
Sequence:
ATGCCGCTCTCCCCGCCCTTCGCCCTGCGCCCCTGCCTGGCCCTGCTGTTGCTCAGCCCTTCCCTGGCTCTG
GCGGGGAACGCCGTCCCGCTGACCCCGACCACCATCACCGCCACCCGTACCGAGCAGGCAGTGGATTCGGTG
CCGAGCACCGTCAGCGTGCAGACCCGCGAACAACTGGACCGGCAGAACGTCAACAACATCAAGGAACTGGTG
CGCTACGAACCGGGAGTCTCGGTCGGCGGCGCCGGCCAGCGTGCCGGGATCACCGGCTACAACATCCGCGGC
ATCGACGGGAACCGCATCCTTACGCAGATCGACGGGGTCGAACTGCCCAACGACTTCTTCAGCGGCCCCTAC
GCGCAGACCCACCGCAACTACGTCGATCCGGACATCGTAAAGCGCGTGGAAATCCTTCGCGGCCCGGCCTCG
GCGCTGTACGGCAGCAACGCCATCGGCGGCGCGGTGAGCTACTTCACCCTCGACCCGTCGGACATCATCAAG
GACGGCAAGGACGTCGGCGCCCGGCTGAAGGCCGGCTACGAGTCGGCCAGCCACTCCTGGCTGACCTCGGCC
ACCGTCGCCGGCCGCGCCGACGACTTCGACGGTCTGCTGCATTATGGCTACCGCCAGGGCCACGAGACCGAA
TCCAACGGCGGCCACGGCGGCACCGGGCTCTCGCGCAGCGAAGCCAACCCGGAAGACGCCGACAGCTACAGC
CTGCTCGGCAAGCTGGGCTGGAACTACGCCGAGGGCAGCCGCTTCGGGCTGGTCTTCGAGAAGTACAAGAGC
GACGTCGATACCGACCAGAAGAGCGCCTATGGCGGCCCGTACGACAAGGGCAAGCCGGCCATCCCGCCGAGC
ATGCTGCCGGGCGGCATGTACCAGTGGCGCAAGGGCAACGACACCCTGACTCGCGAGCGCTACGGCCTGGAG
CACCATTTCCTGCTCGACAGCCCGGTCGCCGATCGCATCCAGTGGAGCCTGAACTACCAGTTGGCGAAGACC
GACCAGGCGACCCGCGAGTTCTACTACCCGATCACCCGCAAGGTCCTGCGCACCCGCGACACTACCTACAAG
GAACGCCTGTGGGTCTTCGACAGTCAGTTGGACAAGAGCTTCGCCATCGGCGAGACCGAGCACCTGCTGAGC
TACGGGATCAATCTCAAGCACCAGAAGGTCACCGGCATGCGCAGCGGCACCGGCACCAACCTGGACACCGGC
GCGGACAGCCCGCGCGATGCCCTGGAACGCAGCAGCGACTTTCCCGATCCGACGGTGAAGACCTACGCCCTG
TTCGCCCAGGACAGCATCAGCTGGAACGACTGGACCTTCACTCCCGGCCTGCGTTACGACTACACGCGCATG
GAGCCGCACATCACCGACGAGTTCCTGCGCACCATGAAGCAGAGCCAGAACACCGCGGTCGACGAGTCGGAC
AAGAAATGGCACCGGGTTTCGCCCAAGTTCGGCGTGACCTACGACTTCGCCCAGCACTACACCTGGTACGGC
CAATACGCCCAGGGCTTCCGCACGCCCACCGCCAAGGCGCTGTACGGTCGATTCGAGAACCTGCAGGCGGGC
TACCACATCGAGCCTAACCCCAACCTCAAGCCGGAAAAGAGCCAGAGCTTCGAGACCGGGCTGCGCGGCAAG
TTCGACGAAGGCAGCTTCGGCGTGGCGGTGTTCTACAACAAATATCGCGACTTCATCGACGAAGACGCCCTG
AATACCGATAGCACCGGCGGCAACGGCCAGACCTTCCAGTCCAACAACATCGAGCGTGCGGTGATCAAGGGC
GTCGAACTCAAGGGCCGCCTGGAGCTGGGCGCCTTCGGCGCGCCGCAGGGACTCTACACCCAGGGCAGCGTG
GCCTACGCCTACGGTCGCAACAAGGACAACGGCGAGCCGATCAACAGCGTCAACCCACTCACCGGAGTGTTC
GGCCTGGGCTACGACGAAGCAGACGGCAACTACGGCGGGCTGCTCAGCTGGACCCTGGTCAAACGCAAGGAC
CGCGTCGACGACAGCACCTTCCACACCCCGGATGGCACCGCCAGCCAGTTCAAGACCCCGGGCTTCGGCGTC
CTCGACCTCAGCGCCTACTACAGGCTGAGCAAGGACCTGACCCTCAACGCCGGTCTCTACAATCTGACCGAC
AAGAAATACTGGCTGTGGGATGACGTGCGCGGCTACGACAGCGTCGGCGAGGCTTCGGCGCTGGCCCCGGCC
AACATCGACCGGCTGTCCCAGCCAGGCCGTAATTTCGCGGTCAACCTGGTCTGGGACATCTGA
Translation:
MPLSPPFALRPCLALLLLSPSLALAGNAVPLTPTTITATRTEQAVDSVPSTVSVQTREQLDRQNVNNIKELV
RYEPGVSVGGAGQRAGITGYNIRGIDGNRILTQIDGVELPNDFFSGPYAQTHRNYVDPDIVKRVEILRGPAS
ALYGSNAIGGAVSYFTLDPSDIIKDGKDVGARLKAGYESASHSWLTSATVAGRADDFDGLLHYGYRQGHETE
SNGGHGGTGLSRSEANPEDADSYSLLGKLGWNYAEGSRFGLVFEKYKSDVDTDQKSAYGGPYDKGKPAIPPS
MLPGGMYQWRKGNDTLTRERYGLEHHFLLDSPVADRIQWSLNYQLAKTDQATREFYYPITRKVLRTRDTTYK
ERLWVFDSQLDKSFAIGETEHLLSYGINLKHQKVTGMRSGTGTNLDTGADSPRDALERSSDFPDPTVKTYAL
FAQDSISWNDWTFTPGLRYDYTRMEPHITDEFLRTMKQSQNTAVDESDKKWHRVSPKFGVTYDFAQHYTWYG
QYAQGFRTPTAKALYGRFENLQAGYHIEPNPNLKPEKSQSFETGLRGKFDEGSFGVAVFYNKYRDFIDEDAL
NTDSTGGNGQTFQSNNIERAVIKGVELKGRLELGAFGAPQGLYTQGSVAYAYGRNKDNGEPINSVNPLTGVF
GLGYDEADGNYGGLLSWTLVKRKDRVDDSTFHTPDGTASQFKTPGFGVLDLSAYYRLSKDLTLNAGLYNLTD
KKYWLWDDVRGYDSVGEASALAPANIDRLSQPGRNFAVNLVWDI*
AnnotationID:199GeneID:189
AnnotatorUID: diggins
Modification Date/Time: 2005-03-09 05:05:27
Gene Name:
Confidence Code:3
GeneProduct:putative haem/haemoglobin uptake outer membrane receptor PhuR precursor
Cell Localization:()
Synonyms:phuR
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:cd01347,COG1629,pfam00593
Secondary Functional Category(ies):membrane protein
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN66631.1|AE016290_9 (AE016777) outer membrane heme receptor, putative [Pseudomonas
           putida KT2440]
          Length = 759

 Score = 1041 bits (2691), Expect = 0.0
 Identities = 507/751 (67%), Positives = 590/751 (78%), Gaps = 25/751 (3%)

>gb|AAO54808.1| (AE016860) TonB-dependent outer membrane heme receptor [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 857

 Score = 1039 bits (2687), Expect = 0.0
 Identities = 498/747 (66%), Positives = 600/747 (80%), Gaps = 20/747 (2%)

>gb|AAD31012.1|AF127222_1 (AF127222) outer membrane heme receptor PfhR [Pseudomonas
           fluorescens]
          Length = 756

 Score = 1006 bits (2601), Expect = 0.0
 Identities = 488/750 (65%), Positives = 594/750 (79%), Gaps = 25/750 (3%)






 
Structural Features:
cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channel
CD-Length = 672 residues,  99.9% aligned
Score =  300 bits (770), Expect = 3e-82

COG1629, CirA, Outer membrane receptor proteins, mostly Fe transport 
[Inorganic ion transport and metabolism]
CD-Length = 768 residues,  96.9% aligned
Score =  270 bits (689), Expect = 5e-73
Identities = 190/779 (24%), Positives = 270/779 (34%), Gaps = 52/779 (6%)

pfam00593, TonB_dep_Rec, TonB dependent receptor.
CD-Length = 712 residues,  99.6% aligned
Score =  254 bits (648), Expect = 4e-68
Identities = 182/755 (24%), Positives = 272/755 (36%), Gaps = 85/755 (11%)






   
Genomic Context:






   
Comment:


















    ReferenceID:381




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17523




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37631




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:189_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:189
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
328
                           PA4710_tr
                           translation of PA4710
                           764
                           99.86
                           99.86
                           0
                           4058.0
     

     
     
21202
                           gb|AAG08096.1|AE004885_1
                           (AE004885) Haem/Haemoglobin uptake outer membrane receptor PhuR precursor [Pseudomonas aeruginosa PAO1]
                           764
                           99.86
                           99.86
                           0
                           4058.0
     

     
     
21203
                           gb|AAC13289.1|
                           (AF055999) outer membrane hemin receptor [Pseudomonas aeruginosa]
                           764
                           99.47
                           99.47
                           0
                           4044.0
     

     
     
21204
                           gb|AAR19307.1|
                           (AY426537) putative outer membrane hemin receptor [symbiont bacterium of Paederus fuscipes]
                           766
                           75.71
                           86.29
                           5
                           3168.0
     

     
     
21205
                           gb|AAN66631.1|AE016290_9
                           (AE016777) outer membrane heme receptor, putative [Pseudomonas putida KT2440]
                           789
                           64.38
                           75.15
                           55
                           2700.0
     

     






      

          
GC ORFID: 43191How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4710Glimmer Score: 

          
Start: 4824828Stop: 4827122

          
Length: 2295


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4710 translation of PA4710Homolog Bit Score 1567.0

          
Other Homologs:  t_PA4710 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCGCTCTCCCCGCCCTTCGCCCTGCGCCCCTGCCTGGCCCTGCTGTTGCTCAGCCCTTCCCTGGCTCTG 
GCGGGGAACGCCGTCCCGCTGACCCCGACCACCATCACCGCCACCCGTACCGAGCAGGCAGTGGATTCGGTG 
CCGAGCACCGTCAGCGTGCAGACCCGCGAACAACTGGACCGGCAGAACGTCAACAACATCAAGGAACTGGTG 
CGCTACGAACCGGGAGTCTCGGTCGGCGGCGCCGGCCAGCGTGCCGGGATCACCGGCTACAACATCCGCGGC 
ATCGACGGGAACCGCATCCTTACGCAGATCGACGGGGTCGAACTGCCCAACGACTTCTTCAGCGGCCCCTAC 
GCGCAGACCCACCGCAACTACGTCGATCCGGACATCGTAAAGCGCGTGGAAATCCTTCGCGGCCCGGCCTCG 
GCGCTGTACGGCAGCAACGCCATCGGCGGCGCGGTGAGCTACTTCACCCTCGACCCGTCGGACATCATCAAG 
GACGGCAAGGACGTCGGCGCCCGGCTGAAGGCCGGCTACGAGTCGGCCAGCCACTCCTGGCTGACCTCGGCC 
ACCGTCGCCGGCCGCGCCGACGACTTCGACGGTCTGCTGCATTATGGCTACCGCCAGGGCCACGAGACCGAA 
TCCAACGGCGGCCACGGCGGCACCGGGCTCTCGCGCAGCGAAGCCAACCCGGAAGACGCCGACAGCTACAGC 
CTGCTCGGCAAGCTGGGCTGGAACTACGCCGAGGGCAGCCGCTTCGGGCTGGTCTTCGAGAAGTACAAGAGC 
GACGTCGATACCGACCAGAAGAGCGCCTATGGCGGCCCGTACGACAAGGGCAAGCCGGCCATCCCGCCGAGC 
ATGCTGCCGGGCGGCATGTACCAGTGGCGCAAGGGCAACGACACCCTGACTCGCGAGCGCTACGGCCTGGAG 
CACCATTTCCTGCTCGACAGCCCGGTCGCCGATCGCATCCAGTGGAGCCTGAACTACCAGTTGGCGAAGACC 
GACCAGGCGACCCGCGAGTTCTACTACCCGATCACCCGCAAGGTCCTGCGCACCCGCGACACTACCTACAAG 
GAACGCCTGTGGGTCTTCGACAGTCAGTTGGACAAGAGCTTCGCCATCGGCGAGACCGAGCACCTGCTGAGC 
TACGGGATCAATCTCAAGCACCAGAAGGTCACCGGCATGCGCAGCGGCACCGGCACCAACCTGGACACCGGC 
GCGGACAGCCCGCGCGATGCCCTGGAACGCAGCAGCGACTTTCCCGATCCGACGGTGAAGACCTACGCCCTG 
TTCGCCCAGGACAGCATCAGCTGGAACGACTGGACCTTCACTCCCGGCCTGCGTTACGACTACACGCGCATG 
GAGCCGCACATCACCGACGAGTTCCTGCGCACCATGAAGCAGAGCCAGAACACCGCGGTCGACGAGTCGGAC 
AAGAAATGGCACCGGGTTTCGCCCAAGTTCGGCGTGACCTACGACTTCGCCCAGCACTACACCTGGTACGGC 
CAATACGCCCAGGGCTTCCGCACGCCCACCGCCAAGGCGCTGTACGGTCGATTCGAGAACCTGCAGGCGGGC 
TACCACATCGAGCCTAACCCCAACCTCAAGCCGGAAAAGAGCCAGAGCTTCGAGACCGGGCTGCGCGGCAAG 
TTCGACGAAGGCAGCTTCGGCGTGGCGGTGTTCTACAACAAATATCGCGACTTCATCGACGAAGACGCCCTG 
AATACCGATAGCACCGGCGGCAACGGCCAGACCTTCCAGTCCAACAACATCGAGCGTGCGGTGATCAAGGGC 
GTCGAACTCAAGGGCCGCCTGGAGCTGGGCGCCTTCGGCGCGCCGCAGGGACTCTACACCCAGGGCAGCGTG 
GCCTACGCCTACGGTCGCAACAAGGACAACGGCGAGCCGATCAACAGCGTCAACCCACTCACCGGAGTGTTC 
GGCCTGGGCTACGACGAAGCAGACGGCAACTACGGCGGGCTGCTCAGCTGGACCCTGGTCAAACGCAAGGAC 
CGCGTCGACGACAGCACCTTCCACACCCCGGATGGCACCGCCAGCCAGTTCAAGACCCCGGGCTTCGGCGTC 
CTCGACCTCAGCGCCTACTACAGGCTGAGCAAGGACCTGACCCTCAACGCCGGTCTCTACAATCTGACCGAC 
AAGAAATACTGGCTGTGGGATGACGTGCGCGGCTACGACAGCGTCGGCGAGGCTTCGGCGCTGGCCCCGGCC 
AACATCGACCGGCTGTCCCAGCCAGGCCGTAATTTCGCGGTCAACCTGGTCTGGGACATCTGA