ViewGene
Locus Name:
GeneID:
Location:

GeneID:1889
TrivialName: PA14_36290
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_36290
PAO1 Ortholog Locus:PA2197
Sequence Length:1038
Protein Length:345
Start: 3232551
Stop: 3231514
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05585.1|AE004646_6 (AE004646) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 343/345 (99%), Positives = 344/345 (99%)
Sequence:
ATGTCCCAATCCACGCAGGTCAACCGCCGCATCGTCCTCGCCTCGCGCCCCCACGGCGCCCCGACCCGGGAT
AACTTCCGCATCGAGCAGGTTCCGCTTCCTGAGCCCGGCGCGGGCCAGGTGCTGCTGCGCACCGTCTACCTG
TCGCTCGATCCCTACATGCGCGGACGGATGAGCGACGCGCCGTCCTACGCGCCGCCGGTGGAACTCGGCGCG
GTCATGGTCGGCGGCACGGTCAGCCGGGTGGAAGCCTCGAACCATCCCGGGTTCAAGGTCGGCGACTGGGTA
CTCTCGGCCAACGGCTGGCAGGACTACGCGCTTTCCGACGGCAGCGGCCTGGCGCGCCTGGGCGAGTCGCCG
GAGCATCCGTCCTACGCCCTGGGCCTGCTCGGCATGCCCGGCTTCACCGCCTACATGGGCCTGCTCGACATC
GGCAAACCCCAGGCCGGCGAGACCCTGGTGGTGGGCGCCGCCACCGGGCCGGTCGGCGCCACCGTCGGACAG
ATCGGCAAGCTCAAGGGCTGCCGGGTGGTCGGCGTCGCCGGCGGTGCGGAAAAATGCCGCCACGCCGTGCAG
GTGCTCGGCTTCGATGCCTGCCTCGACCACCATGCCGCGGACTTCGCCGAACGACTGGCCGAGGCCTGCCCG
GACGGCATCGACATCTATTACGAGAACGTCGGCGGCAAGGTCTTCGACGCCGTCTTTCCGCTGCTCAACGCC
AAGGCCCGGATCCCGGTCTGCGGTATCGTCGCCCACTACAACGACACCGACCTGCCGCCCGGGCCGGACCGC
TTGCCGGCGCTGATGGGCACGATCCTGCGCAAGCGCATCAAGGTGCAGGGCTTCATCATCTTCGACGACTAC
GGCCATCGCTACGATGAATTCCAGCGCGACATGTCGAAGTGGTTCGCCGACGGCCTCATCCAGTACCGCGAA
GAGCGGGTCGACGGCCTGGAGAATGCCCCCGAGGCCTTCTTCGGCCTGCTCCAGGGACGCAATTTCGGCAAG
CTGGTGGTGCGCGTCGGAGCCGACGCATGA
Translation:
MSQSTQVNRRIVLASRPHGAPTRDNFRIEQVPLPEPGAGQVLLRTVYLSLDPYMRGRMSDAPSYAPPVELGA
VMVGGTVSRVEASNHPGFKVGDWVLSANGWQDYALSDGSGLARLGESPEHPSYALGLLGMPGFTAYMGLLDI
GKPQAGETLVVGAATGPVGATVGQIGKLKGCRVVGVAGGAEKCRHAVQVLGFDACLDHHAADFAERLAEACP
DGIDIYYENVGGKVFDAVFPLLNAKARIPVCGIVAHYNDTDLPPGPDRLPALMGTILRKRIKVQGFIIFDDY
GHRYDEFQRDMSKWFADGLIQYREERVDGLENAPEAFFGLLQGRNFGKLVVRVGADA*
AnnotationID:1898GeneID:1889
AnnotatorUID: diggins
Modification Date/Time: 2005-03-03 13:01:56
Gene Name:
Confidence Code:3
GeneProduct:putative NADP-dependent oxidoreductase
Cell Localization:()
Synonyms:yncB
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2130
Secondary Functional Category(ies):transport of small molecules
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN68088.1|AE016440_8 (AE016783) alcohol dehydrogenase, zinc-containing [Pseudomonas
           putida KT2440]
          Length = 344

 Score =  580 bits (1494), Expect = e-165
 Identities = 280/344 (81%), Positives = 301/344 (87%)

>gb|AAL20507.1| (AE008770) putative NADP-dependent oxidoreductase [Salmonella
           typhimurium LT2]
          Length = 356

 Score =  533 bits (1374), Expect = e-151
 Identities = 252/345 (73%), Positives = 290/345 (84%)

>dbj|BAA15084.1| (D90785) Possible quinone oxidoreductase (EC 1.6.5.5)
           (NADPH:quinone reductase) (P36). [Escherichia coli]
          Length = 353

 Score =  533 bits (1372), Expect = e-151
 Identities = 251/344 (72%), Positives = 289/344 (84%)






 
Structural Features:
COG2130, COG2130, Putative NADP-dependent oxidoreductases 
CD-Length = 340 residues,  99.4% aligned
Score =  529 bits (1365), Expect = 2e-151
Identities = 230/342 (67%), Positives = 269/342 (78%), Gaps = 4/342 (1%)






   
Genomic Context:






   
Comment:


















    ReferenceID:3781




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20928




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32555




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1889_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1889
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3333
                           PA2197_tr
                           translation of PA2197
                           345
                           99.42
                           99.71
                           0
                           1811.0
     

     
     
103495
                           gb|AAG05585.1|AE004646_6
                           (AE004646) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           345
                           99.42
                           99.71
                           0
                           1811.0
     

     
     
103496
                           gb|AAN68088.1|AE016440_8
                           (AE016783) alcohol dehydrogenase, zinc-containing [Pseudomonas putida KT2440]
                           345
                           81.15
                           87.24
                           1
                           1494.0
     

     
     
103498
                           gb|AAO69134.1|
                           (AE016839) putative NADP-dependent oxidoreductase [Salmonella enterica subsp. enterica serovar Typhi Ty2]
                           345
                           73.04
                           84.05
                           0
                           1374.0
     

     
     
103499
                           emb|CAD01735.1|
                           (AL627270) putative NADP-dependent oxidoreductase [Salmonella enterica subsp. enterica serovar Typhi]
                           345
                           73.04
                           84.05
                           0
                           1374.0
     

     






      

          
GC ORFID: 44891How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2197Glimmer Score: 

          
Start: 1721365Stop: 1722402

          
Length: 1038


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2197 translation of PA2197Homolog Bit Score 702.0

          
Other Homologs:  t_PA1648 (ORF: BLASTX 308.0), psyr_15may02_Scaffold1_revised_gene567 (ORF: BLASTX 274.0), t_PA2197 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCCCAATCCACGCAGGTCAACCGCCGCATCGTCCTCGCCTCGCGCCCCCACGGCGCCCCGACCCGGGAT 
AACTTCCGCATCGAGCAGGTTCCGCTTCCTGAGCCCGGCGCGGGCCAGGTGCTGCTGCGCACCGTCTACCTG 
TCGCTCGATCCCTACATGCGCGGACGGATGAGCGACGCGCCGTCCTACGCGCCGCCGGTGGAACTCGGCGCG 
GTCATGGTCGGCGGCACGGTCAGCCGGGTGGAAGCCTCGAACCATCCCGGGTTCAAGGTCGGCGACTGGGTA 
CTCTCGGCCAACGGCTGGCAGGACTACGCGCTTTCCGACGGCAGCGGCCTGGCGCGCCTGGGCGAGTCGCCG 
GAGCATCCGTCCTACGCCCTGGGCCTGCTCGGCATGCCCGGCTTCACCGCCTACATGGGCCTGCTCGACATC 
GGCAAACCCCAGGCCGGCGAGACCCTGGTGGTGGGCGCCGCCACCGGGCCGGTCGGCGCCACCGTCGGACAG 
ATCGGCAAGCTCAAGGGCTGCCGGGTGGTCGGCGTCGCCGGCGGTGCGGAAAAATGCCGCCACGCCGTGCAG 
GTGCTCGGCTTCGATGCCTGCCTCGACCACCATGCCGCGGACTTCGCCGAACGACTGGCCGAGGCCTGCCCG 
GACGGCATCGACATCTATTACGAGAACGTCGGCGGCAAGGTCTTCGACGCCGTCTTTCCGCTGCTCAACGCC 
AAGGCCCGGATCCCGGTCTGCGGTATCGTCGCCCACTACAACGACACCGACCTGCCGCCCGGGCCGGACCGC 
TTGCCGGCGCTGATGGGCACGATCCTGCGCAAGCGCATCAAGGTGCAGGGCTTCATCATCTTCGACGACTAC 
GGCCATCGCTACGATGAATTCCAGCGCGACATGTCGAAGTGGTTCGCCGACGGCCTCATCCAGTACCGCGAA 
GAGCGGGTCGACGGCCTGGAGAATGCCCCCGAGGCCTTCTTCGGCCTGCTCCAGGGACGCAATTTCGGCAAG 
CTGGTGGTGCGCGTCGGAGCCGACGCATGA