ViewGene
Locus Name:
GeneID:
Location:

GeneID:1888
TrivialName: PA14_43740
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_43740
PAO1 Ortholog Locus:PA1605
Sequence Length:1035
Protein Length:344
Start: 3895911
Stop: 3894877
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04994.1|AE004588_7 (AE004588) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 343/344 (99%), Positives = 343/344 (99%)
Sequence:
ATGGCTGGCCCCCGTACGCGTGCCCTGTTTTCGACATTGTTCGCCCTGTCCCTGGTGACATCCTTGACCCAT
GCCAGGGATTATCGCTACAGCGACGCTCACGTGCACTACGTGGATTTCTTCCAGGAAAGCGAAGGCATGCCG
CGCCTGCTGGAGGCGATGGACAAAGGCCGGGTCGACCATGTGATGCTCAGCGGCGTCGCGGTCGCCAAGAAA
TGGCACGAGGACGAGCCGAAGCGGCCGCGCTACTACGCTGGCGACGATGCCGGAGCCTATTGGTACAGCGCC
ACCGACGTGATCGTGGCGGCGGCGGTGAAATCCCTGCCAGCCGAGCAGCGGCGGCGCGTGCATCCGTTCCTG
ACCGGTTTCAACCCGACCGACAAGAACGCCGACGCGCACATCCGTCGCATGCTGGAGCTGGACCCGGGACTC
TGGCAGGGCATCGGCGAGATCTTTACCCGGCACGACGACCTCACCGCGCTGACCTACGGCGACGTGCCGAGG
GCCAACAATGAGGCGCTGGCGCGGGTCTATCACCTGGCCGCCGAATTCGACCTGCCGGTGTTGCTGCACGCC
AACGTCACTTCCAAGCGCGAACGTAACCCGCTGTACCTGGCGGAAATCGAGGAGCCCCTGCGCAATCACCCG
CATGTGCGGTTCATCTGGGCCCATGCCGGGACCAGCATGGAGATCCATCGCCACCAGAAGAAACTGGACTTC
CTCCTGCCGACCCTTGGGCGTCTGCTGCAGCGTTACCCGAACCTCTACATCGACCTGTCCTGGTCGGTGTTG
CGCCCGTACCTGCTGGACGAGCAGGGCAAGCCCGACCCGCAGTGGCTGGCACTGGTCGAGCGGTTTCCGCAA
CGCTTCATGCTCGGTTCCGATGTGGTCGGCCAGTTCGACAGCCTGCCCGAGTTGATGGCGAGCTTCGATCCG
TTCCTCGACGCCTTGCCCGAGCAGGTCGCTCGCCAGGTGGCGCGGGACAACTTCCTGGCGGTGCTGCCGCGC
CAGCCCGCCGATCCGCGAGGCGAATAA
Translation:
MAGPRTRALFSTLFALSLVTSLTHARDYRYSDAHVHYVDFFQESEGMPRLLEAMDKGRVDHVMLSGVAVAKK
WHEDEPKRPRYYAGDDAGAYWYSATDVIVAAAVKSLPAEQRRRVHPFLTGFNPTDKNADAHIRRMLELDPGL
WQGIGEIFTRHDDLTALTYGDVPRANNEALARVYHLAAEFDLPVLLHANVTSKRERNPLYLAEIEEPLRNHP
HVRFIWAHAGTSMEIHRHQKKLDFLLPTLGRLLQRYPNLYIDLSWSVLRPYLLDEQGKPDPQWLALVERFPQ
RFMLGSDVVGQFDSLPELMASFDPFLDALPEQVARQVARDNFLAVLPRQPADPRGE*
AnnotationID:1897GeneID:1888
AnnotatorUID: diggins
Modification Date/Time: 2005-02-25 17:05:54
Gene Name:
Confidence Code:3
GeneProduct:putative 5-oxo-L-prolinase
Cell Localization:()
Synonyms:PA1605
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam04909
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN69757.1|AE016612_3 (AE016789) 5-oxo-L-prolinase, putative [Pseudomonas putida KT2440]
          Length = 335

 Score =  521 bits (1343), Expect = e-147
 Identities = 243/312 (77%), Positives = 277/312 (88%)






 
Structural Features:
pfam04909, Amidohydro_2, Amidohydrolase.
CD-Length = 284 residues,  97.2% aligned
Score =  122 bits (308), Expect = 5e-29
Identities = 74/321 (23%), Positives = 106/321 (33%), Gaps = 47/321 (14%)






   
Genomic Context:






   
Comment:


















    ReferenceID:3779




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20926




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37272




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1888_cdd.html


    		




 
URL:

















    ReferenceID:38147




  
Author/Investigator(s):
        Seddon AP, Li LY, Meister A.





  
Title:
        Resolution of 5-oxo-L-prolinase into a 5-oxo-L-proline-dependent ATPase and a coupling protein.




  
PubMed:
        6145710


MedLine:
        




    
Source:
J Biol Chem. 1984 Jul 10;259(13):8091-4.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=6145710&dopt=Abstract









           
Homologs By Global Alignment 

           

       



     
Gene ID:1888
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3332
                           PA1605_tr
                           translation of PA1605
                           344
                           99.70
                           99.70
                           0
                           1813.0
     

     
     
103493
                           gb|AAG04994.1|AE004588_7
                           (AE004588) hypothetical protein PA1605 [Pseudomonas aeruginosa PAO1]
                           344
                           99.70
                           99.70
                           0
                           1813.0
     

     
     
103494
                           gb|AAN69757.1|AE016612_3
                           (AE016789) 5-oxo-L-prolinase, putative [Pseudomonas putida KT2440]
                           344
                           70.93
                           81.68
                           9
                           1336.0
     

     






      

          
GC ORFID: 44890How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1605Glimmer Score: 

          
Start: 1057998Stop: 1059032

          
Length: 1035


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA1605 translation of PA1605Homolog Bit Score 702.0

          
Other Homologs:  t_PA1605 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCTGGCCCCCGTACGCGTGCCCTGTTTTCGACATTGTTCGCCCTGTCCCTGGTGACATCCTTGACCCAT 
GCCAGGGATTATCGCTACAGCGACGCTCACGTGCACTACGTGGATTTCTTCCAGGAAAGCGAAGGCATGCCG 
CGCCTGCTGGAGGCGATGGACAAAGGCCGGGTCGACCATGTGATGCTCAGCGGCGTCGCGGTCGCCAAGAAA 
TGGCACGAGGACGAGCCGAAGCGGCCGCGCTACTACGCTGGCGACGATGCCGGAGCCTATTGGTACAGCGCC 
ACCGACGTGATCGTGGCGGCGGCGGTGAAATCCCTGCCAGCCGAGCAGCGGCGGCGCGTGCATCCGTTCCTG 
ACCGGTTTCAACCCGACCGACAAGAACGCCGACGCGCACATCCGTCGCATGCTGGAGCTGGACCCGGGACTC 
TGGCAGGGCATCGGCGAGATCTTTACCCGGCACGACGACCTCACCGCGCTGACCTACGGCGACGTGCCGAGG 
GCCAACAATGAGGCGCTGGCGCGGGTCTATCACCTGGCCGCCGAATTCGACCTGCCGGTGTTGCTGCACGCC 
AACGTCACTTCCAAGCGCGAACGTAACCCGCTGTACCTGGCGGAAATCGAGGAGCCCCTGCGCAATCACCCG 
CATGTGCGGTTCATCTGGGCCCATGCCGGGACCAGCATGGAGATCCATCGCCACCAGAAGAAACTGGACTTC 
CTCCTGCCGACCCTTGGGCGTCTGCTGCAGCGTTACCCGAACCTCTACATCGACCTGTCCTGGTCGGTGTTG 
CGCCCGTACCTGCTGGACGAGCAGGGCAAGCCCGACCCGCAGTGGCTGGCACTGGTCGAGCGGTTTCCGCAA 
CGCTTCATGCTCGGTTCCGATGTGGTCGGCCAGTTCGACAGCCTGCCCGAGTTGATGGCGAGCTTCGATCCG 
TTCCTCGACGCCTTGCCCGAGCAGGTCGCTCGCCAGGTGGCGCGGGACAACTTCCTGGCGGTGCTGCCGCGC 
CAGCCCGCCGATCCGCGAGGCGAATAA