ViewGene

Locus Name:
GeneID:
Location:

GeneID:1887
TrivialName: PA14_52040
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_52040
PAO1 Ortholog Locus:PA0945
Sequence Length:1062
Protein Length:353
Start: 4617733
Stop: 4618794
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04334.1|AE004528_12 (AE004528) phosphoribosylaminoimidazole synthetase [Pseudomonas aeruginosa PAO1]
Identities = 352/353 (99%), Positives = 352/353 (99%)
Sequence:
ATGAGCAGCAAGCAACCCTCGTTGAGCTACAAGGACGCTGGTGTGGACATCGACGCCGGCGAAGCCCTGGTG
GAACGCATCAAAGGCGTGGCCAAGCGCACCGCACGCCCGGAAGTGATGGGCGGCCTCGGCGGCTTCGGCGCC
CTCTGCGAAATCCCGGCCGGCTACAAGCAGCCGGTGCTGGTATCCGGCACCGACGGGGTGGGCACCAAGCTG
CGCCTGGCGCTCAACCTGAACAAGCACGACAGCATCGGCCAGGACCTGGTGGCGATGTGCGTCAACGACCTG
GTGGTCTGCGGCGCCGAGCCGCTGTTCTTTCTCGACTACTACGCCACCGGCAAGCTCAACGTCGACGTCGCC
GCCACCGTAGTCACCGGCATCGGTGCCGGTTGCGAACTGGCGGGCTGTTCCCTGGTCGGCGGCGAGACCGCC
GAAATGCCCGGCATGTACGAAGGCGAAGACTATGACCTGGCCGGCTTCTGCGTCGGCGTCGTGGAAAAGGCC
GAGATCATCGACGGCTCCAGGGTCCAGGCCGGCGACGCGCTTATCGCCCTGCCCTCCTCCGGCCCGCACTCC
AACGGCTACTCCCTGATCCGCAAGATCATCGAGGTTTCCGGCGCCGACATCGAGCAGGTCCAACTCGACGGC
AAGCCGCTGGCCGACCTGCTGATGGCGCCGACCCGCATCTACGTCAAGCCGCTGCTGCAACTGATCAAGCAG
ACCGGCGCGGTCAAGGCCATGGCTCACATTACCGGCGGCGGCCTGCTGGACAACATCCCGCGCGTCCTGCCG
GACAACGCCCAGGCCGTGATCGATGTCGCCAGCTGGAACCGTCCGGCGGTATTCGACTGGCTGCAGGAACAG
GGCAACGTCGACGAGACCGAGATGCATCGCGTACTCAACTGCGGCGTCGGCATGGTCATCTGCGTGGCCCAG
AGCGACGCCGAGAAAGCCCTGGAAGTCCTGCGTGCCGCCGGCGAGCAACCCTGGCAGATCGGTCGCATCGAA
ACCTGCGGCGCGGACGCCGAGCGCGTGGTCCTGAACAATCTGAAAAACCACTGA
Translation:
MSSKQPSLSYKDAGVDIDAGEALVERIKGVAKRTARPEVMGGLGGFGALCEIPAGYKQPVLVSGTDGVGTKL
RLALNLNKHDSIGQDLVAMCVNDLVVCGAEPLFFLDYYATGKLNVDVAATVVTGIGAGCELAGCSLVGGETA
EMPGMYEGEDYDLAGFCVGVVEKAEIIDGSRVQAGDALIALPSSGPHSNGYSLIRKIIEVSGADIEQVQLDG
KPLADLLMAPTRIYVKPLLQLIKQTGAVKAMAHITGGGLLDNIPRVLPDNAQAVIDVASWNRPAVFDWLQEQ
GNVDETEMHRVLNCGVGMVICVAQSDAEKALEVLRAAGEQPWQIGRIETCGADAERVVLNNLKNH*
AnnotationID:1896GeneID:1887
AnnotatorUID: danlee
Modification Date/Time: 2004-05-11 13:01:27
Gene Name:purM
Confidence Code:2
GeneProduct:phosphoribosylaminoimidazole synthetase
Cell Localization:()
Synonyms:PA0945
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(18) Nucleotide biosynthesis and metabolism
Alternate Gene Product Name:phosphoribosylformylglycinamidine cyclo-ligase 
Functional Category Confidence Code:5
COGs:COG0150
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Purine metabolism 
Homology:
Structural Features:
COG0150, PurM, Phosphoribosylaminoimidazole (AIR) synthetase. Score: 504, 7e-144
pfam00586, AIRS, AIR synthase related protein, N-terminal domain. Score: 128, 9e-31
pfam02769, AIRS_C, AIR synthase related protein, C-terminal domain. Score: 102, 9e-23
Genomic Context:
PurM and PurN are encoded by adjacent genes, as in E. coli. 
Comment:
ReferenceID:3777
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:20924
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:1887

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
3331 PA0945_tr translation of PA0945 353 99.71 99.71 0 1811.0
103286 gb|AAG04334.1|AE004528_12 (AE004528) phosphoribosylaminoimidazole synthetase [Pseudomonas aeruginosa PAO1] 353 99.71 99.71 0 1811.0
103287 gb|AAN67286.1|AE016355_4 (AE016780) phosphoribosylformylglycinamidine cyclo-ligase [Pseudomonas putida KT2440] 353 89.51 91.21 1 1617.0
103288 gb|AAO55220.1| (AE016861) phosphoribosylformylglycinamidine cyclo-ligase [Pseudomonas syringae pv. tomato str. DC3000] 353 87.53 91.78 1 1603.0
103295 gb|AAC75552.1| (AE000336) phosphoribosylaminoimidazole synthetase = AIR synthetase [Escherichia coli K12] 353 68.27 80.73 8 1244.0
GC ORFID: 44889How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA0945Glimmer Score:
Start: 336174Stop: 335113
Length: 1062
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA0945 translation of PA0945Homolog Bit Score 702.0
Other Homologs: psyr_15may02_Scaffold5_revised_gene5925 (ORF: BLASTX 619.0), t_PA0945 (ORF: GLIMMER)
GC ORF Sequence
ATGAGCAGCAAGCAACCCTCGTTGAGCTACAAGGACGCTGGTGTGGACATCGACGCCGGCGAAGCCCTGGTG
GAACGCATCAAAGGCGTGGCCAAGCGCACCGCACGCCCGGAAGTGATGGGCGGCCTCGGCGGCTTCGGCGCC
CTCTGCGAAATCCCGGCCGGCTACAAGCAGCCGGTGCTGGTATCCGGCACCGACGGGGTGGGCACCAAGCTG
CGCCTGGCGCTCAACCTGAACAAGCACGACAGCATCGGCCAGGACCTGGTGGCGATGTGCGTCAACGACCTG
GTGGTCTGCGGCGCCGAGCCGCTGTTCTTTCTCGACTACTACGCCACCGGCAAGCTCAACGTCGACGTCGCC
GCCACCGTAGTCACCGGCATCGGTGCCGGTTGCGAACTGGCGGGCTGTTCCCTGGTCGGCGGCGAGACCGCC
GAAATGCCCGGCATGTACGAAGGCGAAGACTATGACCTGGCCGGCTTCTGCGTCGGCGTCGTGGAAAAGGCC
GAGATCATCGACGGCTCCAGGGTCCAGGCCGGCGACGCGCTTATCGCCCTGCCCTCCTCCGGCCCGCACTCC
AACGGCTACTCCCTGATCCGCAAGATCATCGAGGTTTCCGGCGCCGACATCGAGCAGGTCCAACTCGACGGC
AAGCCGCTGGCCGACCTGCTGATGGCGCCGACCCGCATCTACGTCAAGCCGCTGCTGCAACTGATCAAGCAG
ACCGGCGCGGTCAAGGCCATGGCTCACATTACCGGCGGCGGCCTGCTGGACAACATCCCGCGCGTCCTGCCG
GACAACGCCCAGGCCGTGATCGATGTCGCCAGCTGGAACCGTCCGGCGGTATTCGACTGGCTGCAGGAACAG
GGCAACGTCGACGAGACCGAGATGCATCGCGTACTCAACTGCGGCGTCGGCATGGTCATCTGCGTGGCCCAG
AGCGACGCCGAGAAAGCCCTGGAAGTCCTGCGTGCCGCCGGCGAGCAACCCTGGCAGATCGGTCGCATCGAA
ACCTGCGGCGCGGACGCCGAGCGCGTGGTCCTGAACAATCTGAAAAACCACTGA