ViewGene
Locus Name:
GeneID:
Location:

GeneID:1886
TrivialName: PA14_00230
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_00230
PAO1 Ortholog Locus:PA0021
Sequence Length:1089
Protein Length:362
Start: 22893
Stop: 23981
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03411.1|AE004441_12 (AE004441) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 358/362 (98%), Positives = 358/362 (98%)
Sequence:
ATGAAGAACCATTCTCCAGCCGAACTGGAAGCACGGCTGCGCCTGCATGGCCTGCCCGAACTGGGGCCCATG
CGCTTCCTGCGCTTGATCGAGGCCTTCGGTTCGGCCTCTTCCGCGCTTGCCGCGCCAGCCGGCGCCTGGCGC
ACCCTGGGAGTGCCTGCCGAGGCCGCTGCCGCGCGGCGCAGCCCGGCGGTGCGGGAAGCGGCGGGTGAAGCC
CTGCGCTGGCTGGAAGGTCCGCGCAGGCACCTGCTGATGTGGGACGACCCGGGATACCCGGCACTGCTCGCC
GAAGTCGCCGATGCCCCGCCGCTGCTGTACGTCGAAGGCGCTCCGGAGACTCTGGAACGGCCGCAACTGGCG
ATGGTCGGCAGCCGCCGCGCCAGCCCCGCCGGGCTGGGCACCGCCCGGAGCTTTGCGCGCAGCCTGGCGCAG
GGCGGCTTCGCCATCACCAGCGGGCTGGCCCTGGGCATCGATGGCGCCGCCCACGAGGGCGCGCTGGAGGTT
GGCGGCGTGACCGTGGCAGTCCTCGGCACCGGCCTGCGCAGGCTCTATCCGCGCCGCCACGAGGCGCTGGCG
CGGCGCATCGTCGAGGGTGGCGGCGCGCTGGTTTCGGAACTGCCGCTGGACAGCCCGCCGCTGCCGGCAAAC
TTTCCCCGGCGCAACCGCATCATCAGCGGACTCTCGCTGGGTGTGCTGGTGGTCGAGGCAAGTCCCGCCAGC
GGCTCGCTGATCACCGCGCGGCTGGCGGCGGAACAGGGTCGCGAGGTATACGCCATCCCGGGCTCCATCCAC
CACCCCGGCGCACGTGGCTGCCACCAGCTGATTCGCGATGGCGCGCTGCTGGTGGAAAGCGTCGGGCACGTG
CTCGAAGCACTGCGCGGCTGGGCGCAGGCGGAGCCAGCGGAAGCGCCGGCGCAACCCCTGCCCCACCCTTTG
CTGGCGCTGCTGCGCGCCGCGCCCTACACCAGCGAAGGCCTGGCCGCCGCCAGCGGCATGACGCTGCCCGAC
GTGCTGGCGACGCTCAGCGAACTGGAACTCGACGGCCGGGTCGCCTGCGAGGCCGGCACCTGGGTGCATCGC
TCCGGCTGA
Translation:
MKNHSPAELEARLRLHGLPELGPMRFLRLIEAFGSASSALAAPAGAWRTLGVPAEAAAARRSPAVREAAGEA
LRWLEGPRRHLLMWDDPGYPALLAEVADAPPLLYVEGAPETLERPQLAMVGSRRASPAGLGTARSFARSLAQ
GGFAITSGLALGIDGAAHEGALEVGGVTVAVLGTGLRRLYPRRHEALARRIVEGGGALVSELPLDSPPLPAN
FPRRNRIISGLSLGVLVVEASPASGSLITARLAAEQGREVYAIPGSIHHPGARGCHQLIRDGALLVESVGHV
LEALRGWAQAEPAEAPAQPLPHPLLALLRAAPYTSEGLAAASGMTLPDVLATLSELELDGRVACEAGTWVHR
SG*
AnnotationID:1895GeneID:1886
AnnotatorUID: diggins
Modification Date/Time: 2005-03-22 11:11:39
Gene Name:
Confidence Code:3
GeneProduct:putative Rossmann fold nucleotide-binding protein
Cell Localization:()
Synonyms:smf
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(11) DNA replication, recombination, modification and repair
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0758,pfam02481
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO53729.1| (AE016856) DNA processing protein DprA, putative [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 394

 Score =  503 bits (1294), Expect = e-142
 Identities = 252/357 (70%), Positives = 293/357 (82%), Gaps = 4/357 (1%)

>gb|AAN65703.1|AE016197_1 (AE016774) smf protein [Pseudomonas putida KT2440]
          Length = 365

 Score =  481 bits (1238), Expect = e-135
 Identities = 248/357 (69%), Positives = 283/357 (79%), Gaps = 2/357 (0%)






 
Structural Features:
COG0758, Smf, Predicted Rossmann fold nucleotide-binding 
protein involved in DNA uptake 
[DNA replication, recombination, and repair / 
Intracellular trafficking and secretion]
CD-Length = 350 residues,  99.7% aligned
Score =  341 bits (875), Expect = 1e-94
Identities = 153/357 (42%), Positives = 200/357 (56%), Gaps = 8/357 (2%)

pfam02481, SMF, SMF family. 
CD-Length = 208 residues, 100.0% aligned
Score =  214 bits (547), Expect = 1e-56
Identities = 110/209 (52%), Positives = 133/209 (63%), Gaps = 1/209 (0%)






   
Genomic Context:






   
Comment:


















    ReferenceID:3775




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20922




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33385




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1886_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1886
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3330
                           PA0021_tr
                           translation of PA0021
                           362
                           98.89
                           98.89
                           0
                           1814.0
     

     
     
103219
                           gb|AAG03411.1|AE004441_12
                           (AE004441) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           362
                           98.89
                           98.89
                           0
                           1814.0
     

     
     
103221
                           gb|AAN65703.1|AE016197_1
                           (AE016774) smf protein [Pseudomonas putida KT2440]
                           367
                           68.11
                           77.92
                           7
                           1240.0
     

     
     
103220
                           gb|AAO53729.1|
                           (AE016856) DNA processing protein DprA, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           394
                           63.95
                           74.87
                           32
                           1293.0
     

     
     
103222
                           emb|CAE44883.1|
                           (BX640412) conserved hypothetical protein [Bordetella pertussis] [Bordetella pertussis Tohama I]
                           372
                           50.26
                           59.94
                           12
                           779.0
     

     






      

          
GC ORFID: 44888How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0021Glimmer Score: 

          
Start: 5824230Stop: 5825318

          
Length: 1089


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0021 translation of PA0021Homolog Bit Score 703.0

          
Other Homologs:  t_PA0021 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAGAACCATTCTCCAGCCGAACTGGAAGCACGGCTGCGCCTGCATGGCCTGCCCGAACTGGGGCCCATG 
CGCTTCCTGCGCTTGATCGAGGCCTTCGGTTCGGCCTCTTCCGCGCTTGCCGCGCCAGCCGGCGCCTGGCGC 
ACCCTGGGAGTGCCTGCCGAGGCCGCTGCCGCGCGGCGCAGCCCGGCGGTGCGGGAAGCGGCGGGTGAAGCC 
CTGCGCTGGCTGGAAGGTCCGCGCAGGCACCTGCTGATGTGGGACGACCCGGGATACCCGGCACTGCTCGCC 
GAAGTCGCCGATGCCCCGCCGCTGCTGTACGTCGAAGGCGCTCCGGAGACTCTGGAACGGCCGCAACTGGCG 
ATGGTCGGCAGCCGCCGCGCCAGCCCCGCCGGGCTGGGCACCGCCCGGAGCTTTGCGCGCAGCCTGGCGCAG 
GGCGGCTTCGCCATCACCAGCGGGCTGGCCCTGGGCATCGATGGCGCCGCCCACGAGGGCGCGCTGGAGGTT 
GGCGGCGTGACCGTGGCAGTCCTCGGCACCGGCCTGCGCAGGCTCTATCCGCGCCGCCACGAGGCGCTGGCG 
CGGCGCATCGTCGAGGGTGGCGGCGCGCTGGTTTCGGAACTGCCGCTGGACAGCCCGCCGCTGCCGGCAAAC 
TTTCCCCGGCGCAACCGCATCATCAGCGGACTCTCGCTGGGTGTGCTGGTGGTCGAGGCAAGTCCCGCCAGC 
GGCTCGCTGATCACCGCGCGGCTGGCGGCGGAACAGGGTCGCGAGGTATACGCCATCCCGGGCTCCATCCAC 
CACCCCGGCGCACGTGGCTGCCACCAGCTGATTCGCGATGGCGCGCTGCTGGTGGAAAGCGTCGGGCACGTG 
CTCGAAGCACTGCGCGGCTGGGCGCAGGCGGAGCCAGCGGAAGCGCCGGCGCAACCCCTGCCCCACCCTTTG 
CTGGCGCTGCTGCGCGCCGCGCCCTACACCAGCGAAGGCCTGGCCGCCGCCAGCGGCATGACGCTGCCCGAC 
GTGCTGGCGACGCTCAGCGAACTGGAACTCGACGGCCGGGTCGCCTGCGAGGCCGGCACCTGGGTGCATCGC 
TCCGGCTGA