ViewGene

Locus Name:
GeneID:
Location:

GeneID: 1884

TrivialName: PA14_56660

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_56660

PAO1 Ortholog Locus: PA4356

Sequence Length: 1053

Protein Length: 350

Start: 5047157

Stop: 5048209

Strand: +

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG07744.1|AE004851_12 (AE004851) xenobiotic reductase [Pseudomonas aeruginosa PAO1] Identities = 350/350 (100%), Positives = 350/350 (100%)

Sequence:

ATGGCTACTCTGTTCGATCCCATCGTGCTCGGCGACCTCGAGCTGCCCAACCGCATCGTCATGGCGCCGCTG
ACCCGCTGCCGCGCCGATGAAGGCCGCGTGCCCAACGCCCTGATGGCCGAGTACTACGCCCAGCGCGCCGAT
GCCGGCCTGATCCTCAGCGAGGCCACCGCGGTCACGCCGATGGGCGTGGGCTATCCCGACACCCCCGGCATC
TGGTCCGATGACCAGGTCCGTGGCTGGAGCAACGTGACCAAGGCGGTGCACGCCGCCGGCGGGCGCATCTTC
CTGCAACTCTGGCACGTCGGGCGGATTTCCGACCCGCTCTACCTGAATGGCGAGCTGCCGGTGGCGCCGAGC
GCCATCGCCGCCGAGGGGCACGTCAGCCTGGTGCGCCCGAAGCGTCCCTACGTCACCCCGCGCGCGCTGGAC
ACCGAGGAGATCGCCGACATCGTCGAGGCCTACCGCCAGGGCGCCGAGCGGGCCAAGGCCGCCGGCTTCGAC
GGCGTGGAGATCCACGGCGCCAACGGCTACCTGCTCGACCAGTTCCTCCAGGACAGCACCAACAAGCGCACC
GACCGCTACGGCGGCTCCATCGAGAACCGCGCGCGCCTGCTGCTGGAAGTCACCGACGCGGCGATCTCCGTA
TGGGGCGCCCAGCGCGTCGGCGTACACCTGGCGCCGCGTGCCGACTCCCACGACATGGGCGATTCCAACCGC
CTGGAAACCTTCAGCCATGTCGCCCGTGAGCTGGGCAAGCGCGGCATCGCCTTCATCTGCGCCCGCGAAGCG
CAGGCCGACGACAGCATCGGCGTAGCCCTGAAGAAAGCCTTCGGCGGACCCTACATCGCCAACGAGCAGTTC
ACCCTCGACAGCGCCAACGCCATCCTGGCCAAGGGCGACGCCGATGCGGTGGCCTTCGGCGTCCCCTTCATC
GCCAACCCGGACCTGGTCGAACGCCTGCGCCAGGGCGCCGAACTGAACCCGCCGCGCCCGGAAACCTTCTAT
ACCGGCGGTACCGAAGGCTACCTGGACTATCCGACCCTGGCCTGA

Translation:

MATLFDPIVLGDLELPNRIVMAPLTRCRADEGRVPNALMAEYYAQRADAGLILSEATAVTPMGVGYPDTPGI
WSDDQVRGWSNVTKAVHAAGGRIFLQLWHVGRISDPLYLNGELPVAPSAIAAEGHVSLVRPKRPYVTPRALD
TEEIADIVEAYRQGAERAKAAGFDGVEIHGANGYLLDQFLQDSTNKRTDRYGGSIENRARLLLEVTDAAISV
WGAQRVGVHLAPRADSHDMGDSNRLETFSHVARELGKRGIAFICAREAQADDSIGVALKKAFGGPYIANEQF
TLDSANAILAKGDADAVAFGVPFIANPDLVERLRQGAELNPPRPETFYTGGTEGYLDYPTLA*

AnnotationID:1893 GeneID:1884

AnnotatorUID: urbach

Modification Date/Time: 2004-03-15 23:11:49

Gene Name:

Confidence Code: 2

GeneProduct: probable xenobiotic reductase B

Cell Localization: ()

Synonyms:

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (1) Adaptation, protection

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs: COG1902,pfam00724,KOG0134

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

87% identity with xenobiotic reductase B from Pseudomonas fluorescens AAF02539.1
http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val=AAF02539.1

Structural Features:

Genomic Context:

Comment:

ReferenceID:3771

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:17121

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 1884_cdd.html

URL:

ReferenceID:17125

Author/Investigator(s): Blehert DS, Fox BG, Chambliss GH.

Title: Cloning and sequence analysis of two Pseudomonas flavoprotein xenobiotic reductases.

PubMed: 10515912

MedLine: 99445452

Source:

J Bacteriol. 1999 Oct;181(20):6254-63

Reference Type: Online

Data:

URL:	`http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Retrieve&list_uids=10515912&dopt=Citation`

ReferenceID:20918

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

Homologs By Global Alignment

Gene ID:1884

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

3324 PA4356_tr translation of PA4356 350 99.99 99.99 0 1814.0

103068 gb|AAG07744.1|AE004851_12 (AE004851) xenobiotic reductase [Pseudomonas aeruginosa PAO1] 350 99.99 99.99 0 1814.0

103069 gb|AAN66545.1|AE016283_4 (AE016777) xenobiotic reductase B [Pseudomonas putida KT2440] 350 81.42 87.71 1 1487.0

103070 gb|AAF02539.1|AF154062_1 (AF154062) xenobiotic reductase B [Pseudomonas fluorescens] 350 81.14 87.42 1 1476.0

103071 dbj|BAA88211.1| (AB025798) NAD(P)H-dependent 2-cyclohexen-1-one reductase homolog [Azotobacter vinelandii] 350 78.00 86.00 1 1428.0

GC ORFID: `44886`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA4356`	Glimmer Score:
Start: `4310833`	Stop: `4311885`
Length: `1053`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_PA4356 translation of PA4356`	Homolog Bit Score `703.0`
Other Homologs: `psyr_15may02_Scaffold12_revised_gene1974 (ORF: BLASTX 554.0), psyr_15may02_Scaffold7_revised_gene7163 (ORF: BLASTX 348.0), t_PA1334 (ORF: BLASTX 304.0), t_PA2932 (ORF: BLASTX 303.0), psyr_15may02_Scaffold10_revised_gene1546 (ORF: BLASTX 256.0), t_PA4356 (ORF: GLIMMER)`
GC ORF Sequence
ATGGCTACTCTGTTCGATCCCATCGTGCTCGGCGACCTCGAGCTGCCCAACCGCATCGTCATGGCGCCGCTG ACCCGCTGCCGCGCCGATGAAGGCCGCGTGCCCAACGCCCTGATGGCCGAGTACTACGCCCAGCGCGCCGAT GCCGGCCTGATCCTCAGCGAGGCCACCGCGGTCACGCCGATGGGCGTGGGCTATCCCGACACCCCCGGCATC TGGTCCGATGACCAGGTCCGTGGCTGGAGCAACGTGACCAAGGCGGTGCACGCCGCCGGCGGGCGCATCTTC CTGCAACTCTGGCACGTCGGGCGGATTTCCGACCCGCTCTACCTGAATGGCGAGCTGCCGGTGGCGCCGAGC GCCATCGCCGCCGAGGGGCACGTCAGCCTGGTGCGCCCGAAGCGTCCCTACGTCACCCCGCGCGCGCTGGAC ACCGAGGAGATCGCCGACATCGTCGAGGCCTACCGCCAGGGCGCCGAGCGGGCCAAGGCCGCCGGCTTCGAC GGCGTGGAGATCCACGGCGCCAACGGCTACCTGCTCGACCAGTTCCTCCAGGACAGCACCAACAAGCGCACC GACCGCTACGGCGGCTCCATCGAGAACCGCGCGCGCCTGCTGCTGGAAGTCACCGACGCGGCGATCTCCGTA TGGGGCGCCCAGCGCGTCGGCGTACACCTGGCGCCGCGTGCCGACTCCCACGACATGGGCGATTCCAACCGC CTGGAAACCTTCAGCCATGTCGCCCGTGAGCTGGGCAAGCGCGGCATCGCCTTCATCTGCGCCCGCGAAGCG CAGGCCGACGACAGCATCGGCGTAGCCCTGAAGAAAGCCTTCGGCGGACCCTACATCGCCAACGAGCAGTTC ACCCTCGACAGCGCCAACGCCATCCTGGCCAAGGGCGACGCCGATGCGGTGGCCTTCGGCGTCCCCTTCATC GCCAACCCGGACCTGGTCGAACGCCTGCGCCAGGGCGCCGAACTGAACCCGCCGCGCCCGGAAACCTTCTAT ACCGGCGGTACCGAAGGCTACCTGGACTATCCGACCCTGGCCTGA