ViewGene
Locus Name:
GeneID:
Location:

GeneID:1882
TrivialName: PA14_54760
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_54760
PAO1 Ortholog Locus:PA0736
Sequence Length:1077
Protein Length:358
Start: 4853789
Stop: 4854865
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04125.1|AE004508_10 (AE004508) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 352/358 (98%), Positives = 355/358 (99%)
Sequence:
ATGCAACCCATCGACCGCGCCCAGGCACAGCAGCGCGCCAACGACATCCTGGTGTTCCAGCGCGAGCTGCAA
CGCCTCGACCAGGAGCAGGCGTTCCGCCTCGAACCGACCCAGGCCCGGCAACTCGCCGACTATCACCTGGCC
CTGCTGGACAGCTACCGCGACCGTTTCGACATCAACCACGACCTGCGCAGCCAGCAACTTTCGCTGGGCATG
CGGGTGGCCTCGTTCTTCGGCGCCCTGGCCTTCGCCGCCAGCGTGTTCCTGCTGTTCTATCGCTTCTGGGGC
CTGTTCCCTACCGTCGCCCAGGTGGCGATCCTGGTCGGCAGCGCCTTCGTCGCGTTCTTCGCCACACTCTGG
GTCCAGGCCAAGGACGCCTCTGGCTACTTCAGCAAGCTGGCGGCGATGGTCGCGTTCGCCTGCTTCGTCCTC
GACCTGACCATGCTCGGGCAGATATTCAACGTCACCCCCAGCGACCTGGCCCTGGTGCCCTGGGCGCTCTAC
GCCCTGCTCCTGGCCTACCTGTGCAACGCCCGCCTGCTGCTGGCGGCGGCGATCCTCTGCGTGATGGGTTTC
ATCGCCGCGCGCGTCGGCACCTGGGGCGGCGGCTACTGGCTGGGCGTAGGCGAGCGACCGGAGAACTTCTTC
CCCGCCGCCGCTCTGATCTTCGCCGTGCCGCTGTGCTTCGAGCAGCGCAACTTCAGCGGCTTCGCCGTGATC
TACCGGGTGTTCGCCCTGCTCGGCCTGTTCCTGCCGATGCTGGTGCTGGCCAACTGGGGCTCAGGCAGCTAC
CTGGCGCTGCCGTCGGCGCTCATCGAGGGGCTCTACCAGGTCGCCGGCTTCGTCGCCGCCGCCCTGGTGATC
TGGCTCGGCGCGCGACGCAACTGGGCCGACGTGAGCAATACCGGGATCACCTTCTTCGTCATCTTCCTCTAC
ACCAAGTTCTTCGACTGGTGGTGGGAAGCGATGCCGAAGTACCTGTTCTTCCTGGTGCTCGGCCTCAGCGCC
TTGCTGATCCTGCTGGTCCTGCGCCGCCTGCGCACGCCCCTGGGCATCGCCGCGAGGACTGACGCATGA
Translation:
MQPIDRAQAQQRANDILVFQRELQRLDQEQAFRLEPTQARQLADYHLALLDSYRDRFDINHDLRSQQLSLGM
RVASFFGALAFAASVFLLFYRFWGLFPTVAQVAILVGSAFVAFFATLWVQAKDASGYFSKLAAMVAFACFVL
DLTMLGQIFNVTPSDLALVPWALYALLLAYLCNARLLLAAAILCVMGFIAARVGTWGGGYWLGVGERPENFF
PAAALIFAVPLCFEQRNFSGFAVIYRVFALLGLFLPMLVLANWGSGSYLALPSALIEGLYQVAGFVAAALVI
WLGARRNWADVSNTGITFFVIFLYTKFFDWWWEAMPKYLFFLVLGLSALLILLVLRRLRTPLGIAARTDA*
AnnotationID:1891GeneID:1882
AnnotatorUID: danlee
Modification Date/Time: 2004-03-26 16:04:16
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA0736
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:3767




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20914




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1882
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3322
                           PA0736_tr
                           translation of PA0736
                           358
                           98.32
                           99.16
                           0
                           1814.0
     

     
     
103029
                           gb|AAG04125.1|AE004508_10
                           (AE004508) hypothetical protein PA0736 [Pseudomonas aeruginosa PAO1]
                           358
                           98.32
                           99.16
                           0
                           1814.0
     

     






      

          
GC ORFID: 44884How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0736Glimmer Score: 

          
Start: 100118Stop: 99042

          
Length: 1077


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0736 translation of PA0736Homolog Bit Score 703.0

          
Other Homologs:  t_PA0736 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCAACCCATCGACCGCGCCCAGGCACAGCAGCGCGCCAACGACATCCTGGTGTTCCAGCGCGAGCTGCAA 
CGCCTCGACCAGGAGCAGGCGTTCCGCCTCGAACCGACCCAGGCCCGGCAACTCGCCGACTATCACCTGGCC 
CTGCTGGACAGCTACCGCGACCGTTTCGACATCAACCACGACCTGCGCAGCCAGCAACTTTCGCTGGGCATG 
CGGGTGGCCTCGTTCTTCGGCGCCCTGGCCTTCGCCGCCAGCGTGTTCCTGCTGTTCTATCGCTTCTGGGGC 
CTGTTCCCTACCGTCGCCCAGGTGGCGATCCTGGTCGGCAGCGCCTTCGTCGCGTTCTTCGCCACACTCTGG 
GTCCAGGCCAAGGACGCCTCTGGCTACTTCAGCAAGCTGGCGGCGATGGTCGCGTTCGCCTGCTTCGTCCTC 
GACCTGACCATGCTCGGGCAGATATTCAACGTCACCCCCAGCGACCTGGCCCTGGTGCCCTGGGCGCTCTAC 
GCCCTGCTCCTGGCCTACCTGTGCAACGCCCGCCTGCTGCTGGCGGCGGCGATCCTCTGCGTGATGGGTTTC 
ATCGCCGCGCGCGTCGGCACCTGGGGCGGCGGCTACTGGCTGGGCGTAGGCGAGCGACCGGAGAACTTCTTC 
CCCGCCGCCGCTCTGATCTTCGCCGTGCCGCTGTGCTTCGAGCAGCGCAACTTCAGCGGCTTCGCCGTGATC 
TACCGGGTGTTCGCCCTGCTCGGCCTGTTCCTGCCGATGCTGGTGCTGGCCAACTGGGGCTCAGGCAGCTAC 
CTGGCGCTGCCGTCGGCGCTCATCGAGGGGCTCTACCAGGTCGCCGGCTTCGTCGCCGCCGCCCTGGTGATC 
TGGCTCGGCGCGCGACGCAACTGGGCCGACGTGAGCAATACCGGGATCACCTTCTTCGTCATCTTCCTCTAC 
ACCAAGTTCTTCGACTGGTGGTGGGAAGCGATGCCGAAGTACCTGTTCTTCCTGGTGCTCGGCCTCAGCGCC 
TTGCTGATCCTGCTGGTCCTGCGCCGCCTGCGCACGCCCCTGGGCATCGCCGCGAGGACTGACGCATGA