ViewGene

Locus Name:
GeneID:
Location:

GeneID:1881
TrivialName: PA14_72300
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_72300
PAO1 Ortholog Locus:PA5477
Sequence Length:1041
Protein Length:346
Start: 6440701
Stop: 6441741
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08862.1|AE004960_5 (AE004960) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 344/346 (99%), Positives = 346/346 (100%)
Sequence:
ATGCCCAACCAACAACGCCCCATCCTCAAGGCCCGCCTGGAGCAACTGATCGCCCTGGTCGGCGGCCTGATG
GCCCGCTATCCACGCACCATCGCCCTGTTCGGCTTCTGTTCGGGCGTGTTCAGTTTCATCATGGTCGACCGG
CAGAAGGGCTTCGCCCAGGTACTGGCAATCATCATGCTGGTCAGCTGGGTCTGGTTGATCCTCGAGAACCTC
CTGCGGGAGACCTTCGCCCGCCGCTTCGGCTGGGAGATCCCGGCGCCGCTGCTGCGCTACGCGACCCAACTG
ATCCACCAGGAAAGCCTGTTCTTCGTCCTGCCGTTCTTTCTCATCACCACCACCTGGAACAGCGGTCAGGCG
CTGTTCACAGGGACGCTGGCCGCCGCGGCGCTGATCTCCATCACCGATCCGCTCTACTATCGCTGGCTGTCC
AGGCGTCGCTGGGTGTTCCTCGCCTACCACACCCTGACCCTGTTTGCGGTGTTGCTGACCTCGCTGCCGATC
CTGCTGCACCTGACCACCCCGGAAAGCTACCGGTTGTCGCTGGGCATCGCCGTCGTGCTGTCCTTCCCCAGC
CTGCTCGTGACCTTCCCGCTACAGCACTGGTGGCGCGGCTTCCTGCTTCTCGGCCTGACCCTGGCGGTAGGC
CTGGCCGGCTGGTTCGGCCGTACCTGGGTGCCGCCGGCCACCCTGTGGCTGACCGAAGTGGCGGTGAGCAGC
CAGTTCGACGACCAGAGCCGCACGCCCGGCGACAGCCTGGAGCAGGTCGGCGCCAGCCAGTTGCGCAGCCAG
GGCCTGTTCGCCTATACCGCGATCAACGCGCCGCGCGGCCTCGACGAGCGCATCTATCACGTGTGGATGTTC
AACGGGAAGGAGTTCGACCGCATCGCCCTGGATATCCACGGCGGCCGCAAGGAGGGCTACCGGGCCTGGACC
CACAAGCAGAACTTCCCCGGCGACCCGGTCGGCCACTGGCAGGTGAAGGTACTCACCGAGGCCGGACAGATG
ATCGGCACCCTGCGCTTCGACGTCACCCAGTGA
Translation:
MPNQQRPILKARLEQLIALVGGLMARYPRTIALFGFCSGVFSFIMVDRQKGFAQVLAIIMLVSWVWLILENL
LRETFARRFGWEIPAPLLRYATQLIHQESLFFVLPFFLITTTWNSGQALFTGTLAAAALISITDPLYYRWLS
RRRWVFLAYHTLTLFAVLLTSLPILLHLTTPESYRLSLGIAVVLSFPSLLVTFPLQHWWRGFLLLGLTLAVG
LAGWFGRTWVPPATLWLTEVAVSSQFDDQSRTPGDSLEQVGASQLRSQGLFAYTAINAPRGLDERIYHVWMF
NGKEFDRIALDIHGGRKEGYRAWTHKQNFPGDPVGHWQVKVLTEAGQMIGTLRFDVTQ*
AnnotationID:1890GeneID:1881
AnnotatorUID: diggins
Modification Date/Time: 2005-03-21 06:06:08
Gene Name:
Confidence Code:3
GeneProduct:putative membrane protein
Cell Localization:()
Synonyms:PA5477
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAO53674.1| (AE016856) membrane protein, putative [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 395

 Score =  454 bits (1169), Expect = e-127
 Identities = 217/333 (65%), Positives = 259/333 (77%)
Structural Features:
CDD Search: No hits above 0.01 threshold.
Genomic Context:
Comment:
ReferenceID:3765
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:20912
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:1881

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
3321 PA5477_tr translation of PA5477 346 99.42 99.99 0 1816.0
103026 gb|AAG08862.1|AE004960_5 (AE004960) hypothetical protein PA5477 [Pseudomonas aeruginosa PAO1] 346 99.42 99.99 0 1816.0
103027 gb|AAN65777.1|AE016203_10 (AE016774) conserved hypothetical protein [Pseudomonas putida KT2440] 352 64.20 77.55 17 1183.0
103028 gb|AAO53674.1| (AE016856) membrane protein, putative [Pseudomonas syringae pv. tomato str. DC3000] 404 53.71 64.10 67 1165.0
GC ORFID: 44883How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA5477Glimmer Score:
Start: 5704390Stop: 5705430
Length: 1041
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA5477 translation of PA5477Homolog Bit Score 704.0
Other Homologs: t_PA5477 (ORF: GLIMMER)
GC ORF Sequence
ATGCCCAACCAACAACGCCCCATCCTCAAGGCCCGCCTGGAGCAACTGATCGCCCTGGTCGGCGGCCTGATG
GCCCGCTATCCACGCACCATCGCCCTGTTCGGCTTCTGTTCGGGCGTGTTCAGTTTCATCATGGTCGACCGG
CAGAAGGGCTTCGCCCAGGTACTGGCAATCATCATGCTGGTCAGCTGGGTCTGGTTGATCCTCGAGAACCTC
CTGCGGGAGACCTTCGCCCGCCGCTTCGGCTGGGAGATCCCGGCGCCGCTGCTGCGCTACGCGACCCAACTG
ATCCACCAGGAAAGCCTGTTCTTCGTCCTGCCGTTCTTTCTCATCACCACCACCTGGAACAGCGGTCAGGCG
CTGTTCACAGGGACGCTGGCCGCCGCGGCGCTGATCTCCATCACCGATCCGCTCTACTATCGCTGGCTGTCC
AGGCGTCGCTGGGTGTTCCTCGCCTACCACACCCTGACCCTGTTTGCGGTGTTGCTGACCTCGCTGCCGATC
CTGCTGCACCTGACCACCCCGGAAAGCTACCGGTTGTCGCTGGGCATCGCCGTCGTGCTGTCCTTCCCCAGC
CTGCTCGTGACCTTCCCGCTACAGCACTGGTGGCGCGGCTTCCTGCTTCTCGGCCTGACCCTGGCGGTAGGC
CTGGCCGGCTGGTTCGGCCGTACCTGGGTGCCGCCGGCCACCCTGTGGCTGACCGAAGTGGCGGTGAGCAGC
CAGTTCGACGACCAGAGCCGCACGCCCGGCGACAGCCTGGAGCAGGTCGGCGCCAGCCAGTTGCGCAGCCAG
GGCCTGTTCGCCTATACCGCGATCAACGCGCCGCGCGGCCTCGACGAGCGCATCTATCACGTGTGGATGTTC
AACGGGAAGGAGTTCGACCGCATCGCCCTGGATATCCACGGCGGCCGCAAGGAGGGCTACCGGGCCTGGACC
CACAAGCAGAACTTCCCCGGCGACCCGGTCGGCCACTGGCAGGTGAAGGTACTCACCGAGGCCGGACAGATG
ATCGGCACCCTGCGCTTCGACGTCACCCAGTGA