ViewGene

Locus Name:
GeneID:
Location:

GeneID: 188

TrivialName: PA14_68440

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_68440

PAO1 Ortholog Locus: PA5181

Sequence Length: 2322

Protein Length: 773

Start: 6104964

Stop: 6107285

Strand: +

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG08566.1|AE004931_3 (AE004931) probable oxidoreductase [Pseudomonas aeruginosa PAO1] Identities = 768/773 (99%), Positives = 771/773 (99%)

Sequence:

ATGAGCCTGCAACCTCTCCAACCCCGCTACAAGCCCTACGCCGGTGCCGCCGCCGGCTGGGGCGCGCTGCGC
AGCGTGGCGCACTTCTGGCTGGACAGCAAACAGCCGTTCAAGAACCTCCGCGCCCTGCTCAAGACCAACCAG
AACGGCGGTTTCGACTGCCCCGGCTGCGCCTGGGGCGACTCGCCGGAAGACGGCCGGGTGAAGTTCTGCGAG
AACGGCGCCAAGGCAGTCAACTGGGAAGCCACCAAGCGCCGCGTCGACACGGCGTTCTTCGCCCGTTACAGC
GTCAGCGCCCTGCGCGAACAGAGCGACTACTGGCTGGAATACCAGGGCCGCCTCACCGGACCGATGCGCTAC
GACCCGCTCAGCGACCACTACCAGCCGATCACCTGGGACGCCGCCTTCGCCCTGGTCGCCGAGCACCTGCGC
CGCCTGGATAGCCCCGACCAGGCGGAGTTCTATACCTCCGGGCGGGCCAGCAACGAGGCGGCCTACCTCTAC
CAGTTGTTCGTCCGCGCGTTCGGCACCAACAACTTCCCCGACTGCTCGAACATGTGCCACGAGGCCAGCGGC
GTGGCACTGGGCCGCAGCGTCGGGGTCGGCAAGGGCAGCGTGACCTTCGACGACTTCGAACACGCCGACGCG
ATCTTCATCCTTGGGCAGAACCCCGGCACCAACCACCCGCGCATGCTCGAGCCGCTGCGCGAAGCAGTGAAG
CGCGGCGCCCAGGTGGTCTGCTTCAACCCTCTCAAGGAGCGCGGCCTGGAGCGCTTCCAGCATCCGCAGAAT
GCGCTGGAAATGCTGACCAACGGCTCCTCGCCGCTGAACACCGCGTTCTTCCGTCCGGCACTGGGCGGCGAC
ATGGCGGCGATCCGCGGGATCGCCAAGTTCCTCCTCGCCTGGGAGCGCGACGCTCAGGCCGAGGGCGGCGAG
CCGGTATTCGACCACGCCTTCATCGCCGAGCACACCGACGGCCTCGAGGCCTACCTGGCCGAACTGGATGCC
ACCCCCTGGGAACACCTGGAGCGCCAGTCCGGGCTGAGCCTGGCGGAAATCGAGCAGGCTGCGCGGATGTAC
CGGCGGGCGAACAGGGTCATCGTCTGCTGGGCGATGGGCATCACCCAGCACCATCATTCGGTGGCGATCATC
CAGGAAATCGTCAACCTGCAACTCCTGCGCGGCAACCTGGGCCGCCCGGGCGCCGGTCTCTGCCCGGTCCGC
GGCCACAGCAACGTGCAGGGCGACCGCACCATGGGCATCAACGAGCGGCCGCCGGCGGCGCTGCTCGACGCA
CTGGAACGGCGCTTCGGCTTCGAAGTGCCACGCCACAACGGGCACAACGCCGTCGAGGCGATCGCCGCGATG
CTCGCGGGCAAGTCGAAGGTCTTCATCGGCctGGGCGGCAATTTCGCCCAGGCCACCCCGGACAGTCCGCGC
ACCCACGCCGCCCTGGCGTCATGCGACCTGACCGTGCACATCAGCACCAAGCTCAACCGCAGCCACCTGACC
ACCGGCCGCGACGCACTGATCCTGCCCTGCCTGGGGCGCACCGACATCGACCGCCAGGCCGAAGGCCCGCAG
GCGGTCACGGTGGAAGACTCGTTCAGCATGATCCACGCATCCTACGGACAACTGGAGCCGCTCTCGCAGCAG
ATGCGTTCGGAACCGGCGATCATCGCCGGCATCGCCAAGGCAACCCTGGGCAACCATCCGGTGGACTGGGAC
GCGCTGATCGCCAACTACGAGCGCATCCGCGAGCTGATCGCCGACACCATCCCCGGTTTCGCCGACTTCAAC
CGCCGCGTCCGGCATCCCGGCGGCTTCTACCTCGGCAACGCCGCCGGCGAACGACGCTGGAACACCGCCAGC
GGCAAGGCCAACTTCATCGCCAACCCGCTGCCCCGCGACCTGTTGCCGGCACAGGTGCGCGACAGCGGCCTC
GAACCCGACCTGATCCTGCAGACCCTGCGCTCCCATGACCAGTACAACACCACCATCTACGGCCTGGACGAT
CGCTATCGCGGAGTGAAGGGCCAGCGCGAAGTGGTATTCGCCAACGAGGCGGATATCCGCCGCCTGGGCTAC
CAGCCGGGCGACAAGGTCGACCTGGTCTCGCTGTGGAGCGATGGCATCGAACGCCGGGTACGCCGCTTCACC
CTGCTCGCCTTCGACATCCCGGCCGGCCAGGCAGCCGCCTACTACCCGGAAACCAATCCCCTGGTGCCGCTG
GAGAGCGTCGGCGTCGGCAGCCATACGCCGACTTCGAAGTTCATCGCGGTACGCCTGGAAAAGGCCACGGGC
GACGGGCGCATTATCTGA

Translation:

MSLQPLQPRYKPYAGAAAGWGALRSVAHFWLDSKQPFKNLRALLKTNQNGGFDCPGCAWGDSPEDGRVKFCE
NGAKAVNWEATKRRVDTAFFARYSVSALREQSDYWLEYQGRLTGPMRYDPLSDHYQPITWDAAFALVAEHLR
RLDSPDQAEFYTSGRASNEAAYLYQLFVRAFGTNNFPDCSNMCHEASGVALGRSVGVGKGSVTFDDFEHADA
IFILGQNPGTNHPRMLEPLREAVKRGAQVVCFNPLKERGLERFQHPQNALEMLTNGSSPLNTAFFRPALGGD
MAAIRGIAKFLLAWERDAQAEGGEPVFDHAFIAEHTDGLEAYLAELDATPWEHLERQSGLSLAEIEQAARMY
RRANRVIVCWAMGITQHHHSVAIIQEIVNLQLLRGNLGRPGAGLCPVRGHSNVQGDRTMGINERPPAALLDA
LERRFGFEVPRHNGHNAVEAIAAMLAGKSKVFIGLGGNFAQATPDSPRTHAALASCDLTVHISTKLNRSHLT
TGRDALILPCLGRTDIDRQAEGPQAVTVEDSFSMIHASYGQLEPLSQQMRSEPAIIAGIAKATLGNHPVDWD
ALIANYERIRELIADTIPGFADFNRRVRHPGGFYLGNAAGERRWNTASGKANFIANPLPRDLLPAQVRDSGL
EPDLILQTLRSHDQYNTTIYGLDDRYRGVKGQREVVFANEADIRRLGYQPGDKVDLVSLWSDGIERRVRRFT
LLAFDIPAGQAAAYYPETNPLVPLESVGVGSHTPTSKFIAVRLEKATGDGRII*

AnnotationID:198 GeneID:188

AnnotatorUID: diggins

Modification Date/Time: 2005-03-15 16:04:23

Gene Name:

Confidence Code: 3

GeneProduct: putative oxidoreductase, molybdopterin-binding

Cell Localization: ()

Synonyms: PA5181

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (12) Energy metabolism

Alternate Gene Product Name: putative dehydrogenase

Functional Category Confidence Code: 5

COGs: COG0243

Secondary Functional Category(ies): putative enzyme

EC Number:

Status: ACTIVE

Pathway:

Homology:

COG0243, BisC, Anaerobic dehydrogenases, typically selenocysteine-containing 
[Energy production and conversion]
CD-Length = 765 residues,  98.4% aligned
Score =  379 bits (974), Expect = 6e-106
Identities = 194/820 (23%), Positives = 279/820 (34%), Gaps = 133/820 (16%)

Structural Features:

Genomic Context:

Comment:

ReferenceID:379

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:17521

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:34896

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 188_cdd.html

URL:

Homologs By Global Alignment

Gene ID:188

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

327 PA5181_tr translation of PA5181 773 99.35 99.74 0 4063.0

21164 gb|AAG08566.1|AE004931_3 (AE004931) probable oxidoreductase [Pseudomonas aeruginosa PAO1] 773 99.35 99.74 0 4063.0

21165 gb|AAN65887.1|AE016216_8 (AE016775) molybdopterin oxidoreductase, alpha subunit [Pseudomonas putida KT2440] 781 77.33 86.04 8 3221.0

21166 gb|AAO58829.1| (AE016875) oxidoreductase, molybdopterin-binding [Pseudomonas syringae pv. tomato str. DC3000] 778 75.83 84.57 5 3149.0

21167 gb|AAN70169.1|AE016656_4 (AE016791) molybdopterin oxidoreductase, alpha subunit [Pseudomonas putida KT2440] 779 72.65 83.31 9 3048.0

GC ORFID: `43190`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA5181`	Glimmer Score:
Start: `5368650`	Stop: `5370971`
Length: `2322`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_PA5181 translation of PA5181`	Homolog Bit Score `1569.0`
Other Homologs: `psyr_15may02_Scaffold14_revised_gene2295 (ORF: BLASTX 1217.0), psyr_15may02_Scaffold2_revised_gene4102 (ORF: BLASTX 719.0), t_PA5181 (ORF: GLIMMER)`
GC ORF Sequence
ATGAGCCTGCAACCTCTCCAACCCCGCTACAAGCCCTACGCCGGTGCCGCCGCCGGCTGGGGCGCGCTGCGC AGCGTGGCGCACTTCTGGCTGGACAGCAAACAGCCGTTCAAGAACCTCCGCGCCCTGCTCAAGACCAACCAG AACGGCGGTTTCGACTGCCCCGGCTGCGCCTGGGGCGACTCGCCGGAAGACGGCCGGGTGAAGTTCTGCGAG AACGGCGCCAAGGCAGTCAACTGGGAAGCCACCAAGCGCCGCGTCGACACGGCGTTCTTCGCCCGTTACAGC GTCAGCGCCCTGCGCGAACAGAGCGACTACTGGCTGGAATACCAGGGCCGCCTCACCGGACCGATGCGCTAC GACCCGCTCAGCGACCACTACCAGCCGATCACCTGGGACGCCGCCTTCGCCCTGGTCGCCGAGCACCTGCGC CGCCTGGATAGCCCCGACCAGGCGGAGTTCTATACCTCCGGGCGGGCCAGCAACGAGGCGGCCTACCTCTAC CAGTTGTTCGTCCGCGCGTTCGGCACCAACAACTTCCCCGACTGCTCGAACATGTGCCACGAGGCCAGCGGC GTGGCACTGGGCCGCAGCGTCGGGGTCGGCAAGGGCAGCGTGACCTTCGACGACTTCGAACACGCCGACGCG ATCTTCATCCTTGGGCAGAACCCCGGCACCAACCACCCGCGCATGCTCGAGCCGCTGCGCGAAGCAGTGAAG CGCGGCGCCCAGGTGGTCTGCTTCAACCCTCTCAAGGAGCGCGGCCTGGAGCGCTTCCAGCATCCGCAGAAT GCGCTGGAAATGCTGACCAACGGCTCCTCGCCGCTGAACACCGCGTTCTTCCGTCCGGCACTGGGCGGCGAC ATGGCGGCGATCCGCGGGATCGCCAAGTTCCTCCTCGCCTGGGAGCGCGACGCTCAGGCCGAGGGCGGCGAG CCGGTATTCGACCACGCCTTCATCGCCGAGCACACCGACGGCCTCGAGGCCTACCTGGCCGAACTGGATGCC ACCCCCTGGGAACACCTGGAGCGCCAGTCCGGGCTGAGCCTGGCGGAAATCGAGCAGGCTGCGCGGATGTAC CGGCGGGCGAACAGGGTCATCGTCTGCTGGGCGATGGGCATCACCCAGCACCATCATTCGGTGGCGATCATC CAGGAAATCGTCAACCTGCAACTCCTGCGCGGCAACCTGGGCCGCCCGGGCGCCGGTCTCTGCCCGGTCCGC GGCCACAGCAACGTGCAGGGCGACCGCACCATGGGCATCAACGAGCGGCCGCCGGCGGCGCTGCTCGACGCA CTGGAACGGCGCTTCGGCTTCGAAGTGCCACGCCACAACGGGCACAACGCCGTCGAGGCGATCGCCGCGATG CTCGCGGGCAAGTCGAAGGTCTTCATCGGCctGGGCGGCAATTTCGCCCAGGCCACCCCGGACAGTCCGCGC ACCCACGCCGCCCTGGCGTCATGCGACCTGACCGTGCACATCAGCACCAAGCTCAACCGCAGCCACCTGACC ACCGGCCGCGACGCACTGATCCTGCCCTGCCTGGGGCGCACCGACATCGACCGCCAGGCCGAAGGCCCGCAG GCGGTCACGGTGGAAGACTCGTTCAGCATGATCCACGCATCCTACGGACAACTGGAGCCGCTCTCGCAGCAG ATGCGTTCGGAACCGGCGATCATCGCCGGCATCGCCAAGGCAACCCTGGGCAACCATCCGGTGGACTGGGAC GCGCTGATCGCCAACTACGAGCGCATCCGCGAGCTGATCGCCGACACCATCCCCGGTTTCGCCGACTTCAAC CGCCGCGTCCGGCATCCCGGCGGCTTCTACCTCGGCAACGCCGCCGGCGAACGACGCTGGAACACCGCCAGC GGCAAGGCCAACTTCATCGCCAACCCGCTGCCCCGCGACCTGTTGCCGGCACAGGTGCGCGACAGCGGCCTC GAACCCGACCTGATCCTGCAGACCCTGCGCTCCCATGACCAGTACAACACCACCATCTACGGCCTGGACGAT CGCTATCGCGGAGTGAAGGGCCAGCGCGAAGTGGTATTCGCCAACGAGGCGGATATCCGCCGCCTGGGCTAC CAGCCGGGCGACAAGGTCGACCTGGTCTCGCTGTGGAGCGATGGCATCGAACGCCGGGTACGCCGCTTCACC CTGCTCGCCTTCGACATCCCGGCCGGCCAGGCAGCCGCCTACTACCCGGAAACCAATCCCCTGGTGCCGCTG GAGAGCGTCGGCGTCGGCAGCCATACGCCGACTTCGAAGTTCATCGCGGTACGCCTGGAAAAGGCCACGGGC GACGGGCGCATTATCTGA