ViewGene
Locus Name:
GeneID:
Location:

GeneID:1879
TrivialName: PA14_35150
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_35150
PAO1 Ortholog Locus:PA2275
Sequence Length:1062
Protein Length:353
Start: 3127512
Stop: 3128573
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05663.1|AE004653_6 (AE004653) probable alcohol dehydrogenase (Zn-dependent) [Pseudomonas aeruginosa PAO1]
Identities = 348/353 (98%), Positives = 349/353 (98%)
Sequence:
ATGACCCTACAGATCCGCGGCTACGCCGCCCAGTCCGCCAGCGCCCCGCTGGCCGCCCATCGCTTCGAACGC
CGCGCGCCGCGCGCCGACGACCTGGTGATCGACATCCTCTACTGCGGCGTCTGCCACTCGGACCTCCATCAG
GCGCGCAACGAATGGCACAACAGCCTGTACCCGCTGGTGCCGGGCCACGAGATCATCGGCCGGGTCGCCAGC
GTCGGCGAGGCGGTGAGCGGTTTCGCGGTCGGCGAACTGGTCGGCGTCGGCTGCATGGTCGACTCCTGCCGG
CACTGCGCCGCCTGCTCCGAGGGCCTGGAGCAGTATTGCGCGGAATACCCGACCCTGACCTACAACGGCCGC
GACCGCCACGACGGCCTGCCGACCTTCGGCGGCTACTCGGAGCGCATCGTGGTCTCGGCCAGGTTCGTCCTG
CGCATTCCCCAGGGACTCGATCCGAAGGCGGCGGCGCCGCTGCTGTGCGCCGGGATCACGTCCTACTCGCCA
CTGCGTCACTGGAAGATCGGCCCCGGTAGCCGGGTGGCGGTGGTCGGCCTGGGCGGCCTCGGTCACATGGGC
CTGAAGTTCGCCAGGGCGCTCGGTGCCGAGGTGGCCCTGTTCACCCGCTCGCCGGGCAAGGAAGAGGAAGCG
CGGCGGCTCGGCGCCGACCAGGTGATCCTTTCCACCGACCCACAGCGGATGGCCGCCGTCGCCGGACGCTTC
GACCTGATCCTGGACACCGTGCCGCACCAGCACGACCTCAATCCCTACCTGGCGACCCTCAAGCGCGACGGC
ACCCTCGTGCTGGTCGGCCTGCTCGAGCCGCTGGAGCCGGCGGTGCACGGTGCGCAACTGGTGATGGGGCGC
CGCTCGATCGCCGGCTCGGCCATCGGCGGCATCGCCGAGACCCAGGAAATGCTGGATTTCTGCGCGACCCAC
GGGATCGCCTGCGACATCGAGATGATCGAGATCCAGCAGATCAACCAGGCCTACGAGCGGATGCTGGCCAGC
GACGTGAAGTATCGCTTCGTGATCGACATGGCCTCCCTGCCGAAGTCCTTCTGA
Translation:
MTLQIRGYAAQSASAPLAAHRFERRAPRADDLVIDILYCGVCHSDLHQARNEWHNSLYPLVPGHEIIGRVAS
VGEAVSGFAVGELVGVGCMVDSCRHCAACSEGLEQYCAEYPTLTYNGRDRHDGLPTFGGYSERIVVSARFVL
RIPQGLDPKAAAPLLCAGITSYSPLRHWKIGPGSRVAVVGLGGLGHMGLKFARALGAEVALFTRSPGKEEEA
RRLGADQVILSTDPQRMAAVAGRFDLILDTVPHQHDLNPYLATLKRDGTLVLVGLLEPLEPAVHGAQLVMGR
RSIAGSAIGGIAETQEMLDFCATHGIACDIEMIEIQQINQAYERMLASDVKYRFVIDMASLPKSF*
AnnotationID:1888GeneID:1879
AnnotatorUID: diggins
Modification Date/Time: 2005-03-04 09:09:44
Gene Name:
Confidence Code:3
GeneProduct:putative Zn-dependent alcohol dehydrogenase
Cell Localization:()
Synonyms:PA2275
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:putative NADP-alcohol dehydrogenase
Functional Category Confidence Code:5
COGs:COG1064,pfam00107
Secondary Functional Category(ies):amino acid biosynthesis and metabolims
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO55699.1| (AE016863) oxidoreductase, zinc-binding [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 350

 Score =  489 bits (1259), Expect = e-137
 Identities = 231/343 (67%), Positives = 280/343 (81%)

>emb|CAD18275.1| (AL646083) PUTATIVE NADP-DEPENDENT ZINC-TYPE ALCOHOL DEHYDROGENASE
           OXIDOREDUCTASE PROTEIN [Ralstonia solanacearum]
          Length = 355

 Score =  480 bits (1235), Expect = e-135
 Identities = 224/345 (64%), Positives = 275/345 (79%)

>emb|CAC47271.1| (AL591791) PUTATIVE ZINC-TYPE ALCOHOL DEHYDROGENASE PROTEIN
           [Sinorhizobium meliloti]
          Length = 347

 Score =  397 bits (1019), Expect = e-110
 Identities = 205/344 (59%), Positives = 246/344 (71%), Gaps = 3/344 (0%)








 
Structural Features:
COG1064, AdhP, Zn-dependent alcohol dehydrogenases
CD-Length = 339 residues,  99.4% aligned
Score =  418 bits (1075), Expect = 7e-118
Identities = 154/347 (44%), Positives = 201/347 (57%), Gaps = 12/347 (3%)

pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase.
CD-Length = 341 residues,  96.5% aligned
Score =  235 bits (601), Expect = 5e-63
Identities = 111/340 (32%), Positives = 159/340 (46%), Gaps = 26/340 (7%)







   
Genomic Context:






   
Comment:


















    ReferenceID:3761




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20908




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32506




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1879_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1879
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3319
                           PA2275_tr
                           translation of PA2275
                           353
                           98.58
                           98.86
                           0
                           1816.0
     

     
     
102972
                           gb|AAG05663.1|AE004653_6
                           (AE004653) probable alcohol dehydrogenase (Zn-dependent) [Pseudomonas aeruginosa PAO1]
                           353
                           98.58
                           98.86
                           0
                           1816.0
     

     
     
102973
                           gb|AAN68038.1|AE016436_6
                           (AE016783) D-isomer specific 2-hydroxyacid dehydrogenase family protein [Pseudomonas putida KT2440]
                           353
                           66.57
                           80.16
                           3
                           1254.0
     

     
     
102974
                           gb|AAO55699.1|
                           (AE016863) oxidoreductase, zinc-binding [Pseudomonas syringae pv. tomato str. DC3000]
                           353
                           66.00
                           79.88
                           3
                           1252.0
     

     
     
102976
                           emb|CAD14162.1|
                           (AL646060) PUTATIVE NADP-DEPENDENT ALCOHOL DEHYDROGENASE OXIDOREDUCTASE PROTEIN [Ralstonia solanacearum]
                           357
                           64.14
                           75.07
                           9
                           1195.0
     

     






      

          
GC ORFID: 44881How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2275Glimmer Score: 

          
Start: 1826404Stop: 1825343

          
Length: 1062


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2275 translation of PA2275Homolog Bit Score 704.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene445 (ORF: BLASTX 483.0), psyr_15may02_Scaffold6_revised_gene6722 (ORF: BLASTX 435.0), t_PA2275 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACCCTACAGATCCGCGGCTACGCCGCCCAGTCCGCCAGCGCCCCGCTGGCCGCCCATCGCTTCGAACGC 
CGCGCGCCGCGCGCCGACGACCTGGTGATCGACATCCTCTACTGCGGCGTCTGCCACTCGGACCTCCATCAG 
GCGCGCAACGAATGGCACAACAGCCTGTACCCGCTGGTGCCGGGCCACGAGATCATCGGCCGGGTCGCCAGC 
GTCGGCGAGGCGGTGAGCGGTTTCGCGGTCGGCGAACTGGTCGGCGTCGGCTGCATGGTCGACTCCTGCCGG 
CACTGCGCCGCCTGCTCCGAGGGCCTGGAGCAGTATTGCGCGGAATACCCGACCCTGACCTACAACGGCCGC 
GACCGCCACGACGGCCTGCCGACCTTCGGCGGCTACTCGGAGCGCATCGTGGTCTCGGCCAGGTTCGTCCTG 
CGCATTCCCCAGGGACTCGATCCGAAGGCGGCGGCGCCGCTGCTGTGCGCCGGGATCACGTCCTACTCGCCA 
CTGCGTCACTGGAAGATCGGCCCCGGTAGCCGGGTGGCGGTGGTCGGCCTGGGCGGCCTCGGTCACATGGGC 
CTGAAGTTCGCCAGGGCGCTCGGTGCCGAGGTGGCCCTGTTCACCCGCTCGCCGGGCAAGGAAGAGGAAGCG 
CGGCGGCTCGGCGCCGACCAGGTGATCCTTTCCACCGACCCACAGCGGATGGCCGCCGTCGCCGGACGCTTC 
GACCTGATCCTGGACACCGTGCCGCACCAGCACGACCTCAATCCCTACCTGGCGACCCTCAAGCGCGACGGC 
ACCCTCGTGCTGGTCGGCCTGCTCGAGCCGCTGGAGCCGGCGGTGCACGGTGCGCAACTGGTGATGGGGCGC 
CGCTCGATCGCCGGCTCGGCCATCGGCGGCATCGCCGAGACCCAGGAAATGCTGGATTTCTGCGCGACCCAC 
GGGATCGCCTGCGACATCGAGATGATCGAGATCCAGCAGATCAACCAGGCCTACGAGCGGATGCTGGCCAGC 
GACGTGAAGTATCGCTTCGTGATCGACATGGCCTCCCTGCCGAAGTCCTTCTGA