ViewGene
Locus Name:
GeneID:
Location:

GeneID:1878
TrivialName: PA14_40420
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_40420
PAO1 Ortholog Locus:PA1861
Sequence Length:1086
Protein Length:361
Start: 3611457
Stop: 3612542
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05250.1|AE004612_4 (AE004612) molybdenum transport protein ModC [Pseudomonas aeruginosa PAO1]
Identities = 361/361 (100%), Positives = 361/361 (100%)
Sequence:
ATGGACGGCCTGCGCCTGCGCTTCCGCCGCGCCTACCCCGGCTTCGAACTGGACATCGACCTGGCTCTTCCC
GGTCGTGGCGTGACCGCTCTGTTCGGCCATTCAGGCTCCGGCAAGAGCACTTGCCTGCGCTGTATCGCCGGC
CTGGAAAAGGCCGCCGAGGGCGAGGTGACGATCAACGGCGAGACCTGGCAGGACAGCCGCCGCAACCTCTTC
GTCGCGCCCCACCGACGTGCCCTCGGCTACGTGTTCCAGGATGCCAACCTGTTCCGCCACCTGACGGTGCGG
CGCAACCTGGCCTTCGGTCTCAAGCGCATCGCCGCCGCCGAGCGCCGCGTCGAGCTGGAACAGGCCTGCGCC
CTGCTGGGCATCGAGCACTTGCTGGAACGCATGCCGGAACGCCTCTCCGGCGGCGAGCAGCAACGCGTCGGC
ATCGCCCGGGCCCTCCTCACCAGCCCGCGCCTGCTGCTGATGGACGAGCCGCTGGCATCCCTCGACCTGAAG
CGCAAGGGCGAGATCCTGCCCTATCTCGAACGCCTGCACGAGGAACTGGACATCCCGGTGCTCTATGTCAGC
CACTCGCCGGACGAAGTGGCGCGCCTGGCCGATCACCTGGTGCTGCTGGAGAACGGCAAGGTCCGCGCCAGC
GGGCCGATCGGCGAAACCCTGGCGCGAGTCGACCTGCCGCTGGCGCTGGACGACGACGCCGGGGTGGTGATC
GAGGGCACGGTCAGCGACCACGACCCGGCCTACGGCCTGCTGACCCTGGTCCTGCCCGGCAGCGCGCTGCAA
ATGCGCGTCGCCCACGCCCCGCTGGCCCCCGGCAAGCGCCTGCGCTTCAAGGTACAGGCGCGCGACGTCAGC
CTGAACCTGCGCGACGACGCCCAGAGCAGCATCCTCAACCGCCTGCCGGTACGGGTTCTGGAATTGGTCGAT
ACCGACACCGCGGCCCACGTACTGGTGCGCCTGGATGCCGGCGGCAATCCGCTGCTGGCGCGGATCACCCGT
TACTCGCGGGACCAGTTGCAACTACGGCCCGGCCAGCTGTTGTGGGCGCAGATCAAGTCGGTGGCAGTGCTC
GCCTGA
Translation:
MDGLRLRFRRAYPGFELDIDLALPGRGVTALFGHSGSGKSTCLRCIAGLEKAAEGEVTINGETWQDSRRNLF
VAPHRRALGYVFQDANLFRHLTVRRNLAFGLKRIAAAERRVELEQACALLGIEHLLERMPERLSGGEQQRVG
IARALLTSPRLLLMDEPLASLDLKRKGEILPYLERLHEELDIPVLYVSHSPDEVARLADHLVLLENGKVRAS
GPIGETLARVDLPLALDDDAGVVIEGTVSDHDPAYGLLTLVLPGSALQMRVAHAPLAPGKRLRFKVQARDVS
LNLRDDAQSSILNRLPVRVLELVDTDTAAHVLVRLDAGGNPLLARITRYSRDQLQLRPGQLLWAQIKSVAVL
A*
AnnotationID:1887GeneID:1878
AnnotatorUID: diggins
Modification Date/Time: 2005-04-28 14:02:33
Gene Name:modC
Confidence Code:2
GeneProduct:molybdenum transport protein ModC
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG4148,COG1118
Secondary Functional Category(ies):
EC Number:3.6.3.29
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO56467.1| (AE016866) molybdate ABC transporter, ATP-binding protein
           [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 362

 Score =  500 bits (1288), Expect = e-141
 Identities = 258/358 (72%), Positives = 295/358 (82%)

>gb|AAN69424.1|AE016578_10 (AE016788) molybdate ABC transporter, ATP-binding protein
           [Pseudomonas putida KT2440]
          Length = 363

 Score =  458 bits (1178), Expect = e-128
 Identities = 239/347 (68%), Positives = 276/347 (79%), Gaps = 1/347 (0%)

>emb|CAE31322.1| (BX640439) molybdenum transport ATP-binding protein [Bordetella
           bronchiseptica]
          Length = 369

 Score =  454 bits (1169), Expect = e-127
 Identities = 234/359 (65%), Positives = 272/359 (75%)








 
Structural Features:
COG4148, ModC, ABC-type molybdate transport system, ATPase component 
[Inorganic ion transport and metabolism]
CD-Length = 352 residues, 100.0% aligned
Score =  463 bits (1192), Expect = 2e-131
Identities = 193/360 (53%), Positives = 243/360 (67%), Gaps = 9/360 (2%)

COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component 
[Inorganic ion transport and metabolism]
CD-Length = 345 residues,  93.9% aligned
Score =  191 bits (487), Expect = 1e-49
Identities = 117/349 (33%), Positives = 165/349 (47%), Gaps = 30/349 (8%)







   
Genomic Context:






   
Comment:


















    ReferenceID:3759




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20906




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37086




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1878_cdd.html


    		




 
URL:

















    ReferenceID:37780




  
Author/Investigator(s):
        Maupin-Furlow JA, Rosentel JK, Lee JH, Deppenmeier U, Gunsalus RP, Shanmugam KT.





  
Title:
        Genetic analysis of the modABCD (molybdate transport) operon of Escherichia coli.




  
PubMed:
        7665460


MedLine:
        




    
Source:
J Bacteriol. 1995 Sep;177(17):4851-6.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=7665460









           
Homologs By Global Alignment 

           

       



     
Gene ID:1878
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3318
                           PA1861_tr
                           translation of PA1861
                           361
                           99.99
                           99.99
                           0
                           1816.0
     

     
     
102869
                           gb|AAG05250.1|AE004612_4
                           (AE004612) molybdenum transport protein ModC [Pseudomonas aeruginosa PAO1]
                           361
                           99.99
                           99.99
                           0
                           1816.0
     

     
     
102870
                           gb|AAO56467.1|
                           (AE016866) molybdate ABC transporter, ATP-binding protein [Pseudomonas syringae pv. tomato str. DC3000]
                           362
                           71.27
                           81.76
                           1
                           1287.0
     

     
     
102872
                           gb|AAN69424.1|AE016578_10
                           (AE016788) molybdate ABC transporter, ATP-binding protein [Pseudomonas putida KT2440]
                           367
                           65.94
                           76.56
                           10
                           1175.0
     

     
     
102874
                           emb|CAE40146.1|
                           (BX640425) molybdenum transport ATP-binding protein [Bordetella parapertussis]
                           369
                           63.41
                           73.71
                           8
                           1167.0
     

     






      

          
GC ORFID: 44880How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1861Glimmer Score: 

          
Start: 1342453Stop: 1341368

          
Length: 1086


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1861 translation of PA1861Homolog Bit Score 704.0

          
Other Homologs:  psyr_15may02_Scaffold7_revised_gene7035 (ORF: BLASTX 484.0), psyr_15may02_Scaffold7_revised_gene6963 (ORF: BLASTX 153.0), t_PA1861 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGACGGCCTGCGCCTGCGCTTCCGCCGCGCCTACCCCGGCTTCGAACTGGACATCGACCTGGCTCTTCCC 
GGTCGTGGCGTGACCGCTCTGTTCGGCCATTCAGGCTCCGGCAAGAGCACTTGCCTGCGCTGTATCGCCGGC 
CTGGAAAAGGCCGCCGAGGGCGAGGTGACGATCAACGGCGAGACCTGGCAGGACAGCCGCCGCAACCTCTTC 
GTCGCGCCCCACCGACGTGCCCTCGGCTACGTGTTCCAGGATGCCAACCTGTTCCGCCACCTGACGGTGCGG 
CGCAACCTGGCCTTCGGTCTCAAGCGCATCGCCGCCGCCGAGCGCCGCGTCGAGCTGGAACAGGCCTGCGCC 
CTGCTGGGCATCGAGCACTTGCTGGAACGCATGCCGGAACGCCTCTCCGGCGGCGAGCAGCAACGCGTCGGC 
ATCGCCCGGGCCCTCCTCACCAGCCCGCGCCTGCTGCTGATGGACGAGCCGCTGGCATCCCTCGACCTGAAG 
CGCAAGGGCGAGATCCTGCCCTATCTCGAACGCCTGCACGAGGAACTGGACATCCCGGTGCTCTATGTCAGC 
CACTCGCCGGACGAAGTGGCGCGCCTGGCCGATCACCTGGTGCTGCTGGAGAACGGCAAGGTCCGCGCCAGC 
GGGCCGATCGGCGAAACCCTGGCGCGAGTCGACCTGCCGCTGGCGCTGGACGACGACGCCGGGGTGGTGATC 
GAGGGCACGGTCAGCGACCACGACCCGGCCTACGGCCTGCTGACCCTGGTCCTGCCCGGCAGCGCGCTGCAA 
ATGCGCGTCGCCCACGCCCCGCTGGCCCCCGGCAAGCGCCTGCGCTTCAAGGTACAGGCGCGCGACGTCAGC 
CTGAACCTGCGCGACGACGCCCAGAGCAGCATCCTCAACCGCCTGCCGGTACGGGTTCTGGAATTGGTCGAT 
ACCGACACCGCGGCCCACGTACTGGTGCGCCTGGATGCCGGCGGCAATCCGCTGCTGGCGCGGATCACCCGT 
TACTCGCGGGACCAGTTGCAACTACGGCCCGGCCAGCTGTTGTGGGCGCAGATCAAGTCGGTGGCAGTGCTC 
GCCTGA