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Modification Date/Time: | 2006-04-06 13:01:23 |
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Missense Discrepancy: | FALSE |
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Comments: Homology: gb|AAG05198.1|AE004607_4 (AE004607) probable permease of ABC transporter [Pseudomonas aeruginosa PAO1]
Identities = 360/360 (100%), Positives = 360/360 (100%)
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Sequence:
ATGCTCTCCTATATCCTGCGGCGCCTGCTGCTGATCGTCCCTACCCTGTTCGGCATCCTGCTGATCAACTTC
ATCATCATCCAGGCCGCTCCCGGCGGTCCGGTGGAGCAGATGATCGCCAAGCTGGAAGGCTTCGACGCCGCT
TCCGGCGGCGCCACCGGACGCATCTCCGGCGGCGGCGGCGAAGTCGCCGTGGCCGGCTCGCAATACCGCGGC
GCGCAAGGCCTGGACCCGGAGCTGGTGAAAGAGATCGAGCGCATGTACGGCTTCGACAAGTCGGCCCCCGAG
CGCTTCATGATCATGCTGAAGAACTACCTGCACCTGGACTTTGGGCAGAGTTTCTTCCGCGACGCCAAGGTC
ACCGACCTGATCATCGAGAAATTGCCGGTGTCGATCTCGCTCGGACTCTGGAGCACGCTGATCATGTACCTG
GTGTCGATCCCGCTGGGGATCGCCAAGGCGGTCCGCCATGGCAGCGTCTTCGACATCTGGACCAGCTCGGCG
ATCATCGTCGGCTACGCCATTCCCGCCTTCCTCTTCGCCATCCTGCTGGTGGTGCTGTTCGCCGGCGGCAGC
TACTGGGACTGGTTCCCCCTGCGCGGCCTGACCTCGAACAACTTCGACCAGCTCAGCCTCGGCGGCAAGGTA
CTCGACTATTTCTGGCACCTGGCCTTGCCGGTAACCGCCCTGGTGATCGGCAACTTCGCCACCATCACGCTG
CTGACCAAGAACAGCTTCCTCGACGAGATCGGCAAGCAATACGTGGTCACCGCCCGCGCCAAGGGCCTGACC
GAACGCCGCGTGCTCTACGGGCACGTATTCCGCAACGCCATGCTGCTGGTGATTGCCGGCCTGCCGGCTGCG
CTGCTGGGGATCTTCTTCACCGGTTCGCTGTTGATCGAGGTGATCTTCTCCCTCGACGGCCTCGGCCTGCTC
AGCTTCGAAGCGGCGATGAACCGCGACTACCCGGTGGTCTTCGGCACGCTGTTCATCTTCACCCTGTTCGGG
CTGGTCATGAAGCTGATCAGCGATATCGTCTACACCCTGGTCGATCCGCGCATCGACTTCGAGAACCGGGAG
TAA |
Translation:
MLSYILRRLLLIVPTLFGILLINFIIIQAAPGGPVEQMIAKLEGFDAASGGATGRISGGGGEVAVAGSQYRG
AQGLDPELVKEIERMYGFDKSAPERFMIMLKNYLHLDFGQSFFRDAKVTDLIIEKLPVSISLGLWSTLIMYL
VSIPLGIAKAVRHGSVFDIWTSSAIIVGYAIPAFLFAILLVVLFAGGSYWDWFPLRGLTSNNFDQLSLGGKV
LDYFWHLALPVTALVIGNFATITLLTKNSFLDEIGKQYVVTARAKGLTERRVLYGHVFRNAMLLVIAGLPAA
LLGIFFTGSLLIEVIFSLDGLGLLSFEAAMNRDYPVVFGTLFIFTLFGLVMKLISDIVYTLVDPRIDFENRE
* |
AnnotationID:1886 | GeneID:1877 |
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Modification Date/Time: |
2005-04-28 13:01:40 |
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GeneProduct: | putative ABC transporter, permease protein |
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Cell Localization Confidence Code: | 5 |
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Functional Category: | (27) Transport of small molecules |
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Alternate Gene Product Name: | |
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Functional Category Confidence Code: | 5 |
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Secondary Functional Category(ies): | membrane protein |
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Homology: | >gb|AAN69730.1|AE016609_4 (AE016789) peptide ABC transporter, permease protein [Pseudomonas
putida KT2440]
Length = 357
Score = 608 bits (1568), Expect = e-173
Identities = 305/360 (84%), Positives = 330/360 (91%), Gaps = 4/360 (1%)
>gb|AAO57187.1| (AE016869) ABC transporter, permease protein [Pseudomonas syringae
pv. tomato str. DC3000]
Length = 357
Score = 599 bits (1545), Expect = e-171
Identities = 297/360 (82%), Positives = 329/360 (91%), Gaps = 4/360 (1%)
>dbj|BAB51935.1| (AP003006) peptide ABC transporter, permease protein [Mesorhizobium
loti]
Length = 364
Score = 491 bits (1264), Expect = e-138
Identities = 242/368 (65%), Positives = 296/368 (80%), Gaps = 13/368 (3%)
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Structural Features: | COG4174, ABC-type_uncharacterized_transport_system,
ABC-type uncharacterized transport system, permease component
CD-Length = 364 residues, 100.0% aligned
Score = 584 bits (1507), Expect = 6e-168
Identities = 267/364 (73%), Positives = 305/364 (83%), Gaps = 4/364 (1%)
COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems,
permease components
[Amino acid transport and metabolism / Inorganic ion transport and metabolism]
CD-Length = 317 residues, 98.7% aligned
Score = 246 bits (630), Expect = 3e-66
Identities = 125/354 (35%), Positives = 186/354 (52%), Gaps = 41/354 (11%) |
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