ViewGene

Locus Name:
GeneID:
Location:

GeneID:1877
TrivialName: PA14_41140
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_41140
PAO1 Ortholog Locus:PA1809
Sequence Length:1083
Protein Length:360
Start: 3668914
Stop: 3669996
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05198.1|AE004607_4 (AE004607) probable permease of ABC transporter [Pseudomonas aeruginosa PAO1]
Identities = 360/360 (100%), Positives = 360/360 (100%)
Sequence:
ATGCTCTCCTATATCCTGCGGCGCCTGCTGCTGATCGTCCCTACCCTGTTCGGCATCCTGCTGATCAACTTC
ATCATCATCCAGGCCGCTCCCGGCGGTCCGGTGGAGCAGATGATCGCCAAGCTGGAAGGCTTCGACGCCGCT
TCCGGCGGCGCCACCGGACGCATCTCCGGCGGCGGCGGCGAAGTCGCCGTGGCCGGCTCGCAATACCGCGGC
GCGCAAGGCCTGGACCCGGAGCTGGTGAAAGAGATCGAGCGCATGTACGGCTTCGACAAGTCGGCCCCCGAG
CGCTTCATGATCATGCTGAAGAACTACCTGCACCTGGACTTTGGGCAGAGTTTCTTCCGCGACGCCAAGGTC
ACCGACCTGATCATCGAGAAATTGCCGGTGTCGATCTCGCTCGGACTCTGGAGCACGCTGATCATGTACCTG
GTGTCGATCCCGCTGGGGATCGCCAAGGCGGTCCGCCATGGCAGCGTCTTCGACATCTGGACCAGCTCGGCG
ATCATCGTCGGCTACGCCATTCCCGCCTTCCTCTTCGCCATCCTGCTGGTGGTGCTGTTCGCCGGCGGCAGC
TACTGGGACTGGTTCCCCCTGCGCGGCCTGACCTCGAACAACTTCGACCAGCTCAGCCTCGGCGGCAAGGTA
CTCGACTATTTCTGGCACCTGGCCTTGCCGGTAACCGCCCTGGTGATCGGCAACTTCGCCACCATCACGCTG
CTGACCAAGAACAGCTTCCTCGACGAGATCGGCAAGCAATACGTGGTCACCGCCCGCGCCAAGGGCCTGACC
GAACGCCGCGTGCTCTACGGGCACGTATTCCGCAACGCCATGCTGCTGGTGATTGCCGGCCTGCCGGCTGCG
CTGCTGGGGATCTTCTTCACCGGTTCGCTGTTGATCGAGGTGATCTTCTCCCTCGACGGCCTCGGCCTGCTC
AGCTTCGAAGCGGCGATGAACCGCGACTACCCGGTGGTCTTCGGCACGCTGTTCATCTTCACCCTGTTCGGG
CTGGTCATGAAGCTGATCAGCGATATCGTCTACACCCTGGTCGATCCGCGCATCGACTTCGAGAACCGGGAG
TAA
Translation:
MLSYILRRLLLIVPTLFGILLINFIIIQAAPGGPVEQMIAKLEGFDAASGGATGRISGGGGEVAVAGSQYRG
AQGLDPELVKEIERMYGFDKSAPERFMIMLKNYLHLDFGQSFFRDAKVTDLIIEKLPVSISLGLWSTLIMYL
VSIPLGIAKAVRHGSVFDIWTSSAIIVGYAIPAFLFAILLVVLFAGGSYWDWFPLRGLTSNNFDQLSLGGKV
LDYFWHLALPVTALVIGNFATITLLTKNSFLDEIGKQYVVTARAKGLTERRVLYGHVFRNAMLLVIAGLPAA
LLGIFFTGSLLIEVIFSLDGLGLLSFEAAMNRDYPVVFGTLFIFTLFGLVMKLISDIVYTLVDPRIDFENRE
*
AnnotationID:1886GeneID:1877
AnnotatorUID: diggins
Modification Date/Time: 2005-04-28 13:01:40
Gene Name:
Confidence Code:3
GeneProduct:putative ABC transporter, permease protein
Cell Localization:()
Synonyms:PA1809
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG4174,COG0601
Secondary Functional Category(ies):membrane protein
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN69730.1|AE016609_4 (AE016789) peptide ABC transporter, permease protein [Pseudomonas
           putida KT2440]
          Length = 357

 Score =  608 bits (1568), Expect = e-173
 Identities = 305/360 (84%), Positives = 330/360 (91%), Gaps = 4/360 (1%)

>gb|AAO57187.1| (AE016869) ABC transporter, permease protein [Pseudomonas syringae
           pv. tomato str. DC3000]
          Length = 357

 Score =  599 bits (1545), Expect = e-171
 Identities = 297/360 (82%), Positives = 329/360 (91%), Gaps = 4/360 (1%)

>dbj|BAB51935.1| (AP003006) peptide ABC transporter, permease protein [Mesorhizobium
           loti]
          Length = 364

 Score =  491 bits (1264), Expect = e-138
 Identities = 242/368 (65%), Positives = 296/368 (80%), Gaps = 13/368 (3%)

Structural Features:
COG4174, ABC-type_uncharacterized_transport_system, 
ABC-type uncharacterized transport system, permease component
CD-Length = 364 residues, 100.0% aligned
Score =  584 bits (1507), Expect = 6e-168
Identities = 267/364 (73%), Positives = 305/364 (83%), Gaps = 4/364 (1%)

COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, 
permease components 
[Amino acid transport and metabolism / Inorganic ion transport and metabolism]
CD-Length = 317 residues,  98.7% aligned
Score =  246 bits (630), Expect = 3e-66
Identities = 125/354 (35%), Positives = 186/354 (52%), Gaps = 41/354 (11%)
Genomic Context:
Comment:
ReferenceID:3757
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:20904
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:37099
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:1877_cdd.html
URL:
Homologs By Global Alignment
Gene ID:1877

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
3316 PA1809_tr translation of PA1809 360 99.99 99.99 0 1816.0
102831 gb|AAG05198.1|AE004607_4 (AE004607) probable permease of ABC transporter [Pseudomonas aeruginosa PAO1] 360 99.99 99.99 0 1816.0
102832 gb|AAN69730.1|AE016609_4 (AE016789) peptide ABC transporter, permease protein [Pseudomonas putida KT2440] 361 84.48 91.41 5 1571.0
102833 gb|AAO57187.1| (AE016869) ABC transporter, permease protein [Pseudomonas syringae pv. tomato str. DC3000] 361 82.27 91.13 5 1548.0
102836 gb|AAO56520.1| (AE016866) peptide ABC transporter, permease protein [Pseudomonas syringae pv. tomato str. DC3000] 361 70.08 83.37 8 1300.0
GC ORFID: 44879How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1809Glimmer Score:
Start: 1284995Stop: 1283913
Length: 1083
Start Codon: ATGTruncated Start:
Stop Codon: TAATruncated Stop:
Homolog: t_PA1809 translation of PA1809Homolog Bit Score 704.0
Other Homologs: psyr_15may02_Scaffold1_revised_gene636 (ORF: BLASTX 603.0), psyr_15may02_Scaffold2_revised_gene3081 (ORF: BLASTX 507.0), psyr_15may02_Scaffold5_revised_gene6044 (ORF: BLASTX 503.0), t_PA2059 (ORF: BLASTX 492.0), t_PA1809 (ORF: GLIMMER)
GC ORF Sequence
ATGCTCTCCTATATCCTGCGGCGCCTGCTGCTGATCGTCCCTACCCTGTTCGGCATCCTGCTGATCAACTTC
ATCATCATCCAGGCCGCTCCCGGCGGTCCGGTGGAGCAGATGATCGCCAAGCTGGAAGGCTTCGACGCCGCT
TCCGGCGGCGCCACCGGACGCATCTCCGGCGGCGGCGGCGAAGTCGCCGTGGCCGGCTCGCAATACCGCGGC
GCGCAAGGCCTGGACCCGGAGCTGGTGAAAGAGATCGAGCGCATGTACGGCTTCGACAAGTCGGCCCCCGAG
CGCTTCATGATCATGCTGAAGAACTACCTGCACCTGGACTTTGGGCAGAGTTTCTTCCGCGACGCCAAGGTC
ACCGACCTGATCATCGAGAAATTGCCGGTGTCGATCTCGCTCGGACTCTGGAGCACGCTGATCATGTACCTG
GTGTCGATCCCGCTGGGGATCGCCAAGGCGGTCCGCCATGGCAGCGTCTTCGACATCTGGACCAGCTCGGCG
ATCATCGTCGGCTACGCCATTCCCGCCTTCCTCTTCGCCATCCTGCTGGTGGTGCTGTTCGCCGGCGGCAGC
TACTGGGACTGGTTCCCCCTGCGCGGCCTGACCTCGAACAACTTCGACCAGCTCAGCCTCGGCGGCAAGGTA
CTCGACTATTTCTGGCACCTGGCCTTGCCGGTAACCGCCCTGGTGATCGGCAACTTCGCCACCATCACGCTG
CTGACCAAGAACAGCTTCCTCGACGAGATCGGCAAGCAATACGTGGTCACCGCCCGCGCCAAGGGCCTGACC
GAACGCCGCGTGCTCTACGGGCACGTATTCCGCAACGCCATGCTGCTGGTGATTGCCGGCCTGCCGGCTGCG
CTGCTGGGGATCTTCTTCACCGGTTCGCTGTTGATCGAGGTGATCTTCTCCCTCGACGGCCTCGGCCTGCTC
AGCTTCGAAGCGGCGATGAACCGCGACTACCCGGTGGTCTTCGGCACGCTGTTCATCTTCACCCTGTTCGGG
CTGGTCATGAAGCTGATCAGCGATATCGTCTACACCCTGGTCGATCCGCGCATCGACTTCGAGAACCGGGAG
TAA