ViewGene
Locus Name:
GeneID:
Location:

GeneID:1876
TrivialName: PA14_47850
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_47850
PAO1 Ortholog Locus:PA1267
Sequence Length:1116
Protein Length:371
Start: 4257154
Stop: 4258269
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04656.1|AE004556_6 (AE004556) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 352/371 (94%), Positives = 359/371 (96%)
Sequence:
GTGAACGCCGAGGTCATCGTGGTCGGCGCCGGCATCGTCGGCAGCGCCTGCGCCCATGAACTGGCGTGTCGC
GGCCTCGACGTGCTGGTGCTGGACAGCCGCCGCGGCGGCGCCACCGCGGTGGGCATGGGGCACCTGGTGGCG
ATGGACGACAACCCGGCCGAACTGGCCCTCAGCGACTACTCGATCCAGGCCTGGCGCACCTGGGCGGCGGAT
CTGCCGGAAGACTGCGCGTACCGCAATTGCGGCACCCTCTGGCTGGCCGCCGACGCCGCCGAACTCGCCGAA
GCCGAGCGCAAGCGCCAGGCCCTGCTGGCCGCCGGCGTCGCCTGCGAGATGCTCGACGCCGCGCGCCTGCGT
GACCTGGAACCGGTCTTGCGGCCAGGCCTCGCCGGCGCCCTGAAGGTGCCGGGCGACGGCATCCTCTACGCG
CCCAACGCGGCGCGCTGGCTGCTCGAACGAGCCGGCCCGCGCCTGCTTCGATTGCACGCCGAAGTCAGCGAA
GTGGACGGCAGCCGCCTGCGCCTGGCCGACGGCCGCTGGCTGAGCGCCGAGGCGCTGGTGCTGGCCAACGGC
ATCCATGCCGGCGAGCTGTGCGCGGAGCTGCCGATCCGCCCGAAGAAAGGCCACCTGCTGATCACCGACCGC
TATCCCGGCACCCTCCGCCATCAACTGGTGGAACTCGGCTATGTCAGCAGCGCCCACGCCAGCAGCGGTACC
TCGGTAGCCTTCAACGCCCAGCCGCGCCCCACCGGGCAGATCTTCCTCGGCTCCTCGCGGCAGTTCGACACG
CTCGACCCGCAGGTGGAAGGCCCGGTGCTGGCGCGCATGCTGCGGCGTGCCCTGGACTACCTGCCGGGGCTC
GCCGGCCTCAATGCGATCCGTGCCTGGACCGGCTTCCGCGCCGCCACTCCGGACGGCCTGCCGCTGCTCGGC
GAGCACCCGGCGCAGCCGGGCCTGTGGCTGGCGGTCGGCCACGAGGGCCTGGGCGTGACCACCGCGCCGGGC
AGCGCGCGCCTGCTCGCCGCCCAGTTGTTCGGCGAAACGCCGCCGCTGGATCCCACGCCTTATCTGCCGCAA
CGCTTCCTCTCCAGCTCCGGGAGTGCCCGGCCATGA
Translation:
MNAEVIVVGAGIVGSACAHELACRGLDVLVLDSRRGGATAVGMGHLVAMDDNPAELALSDYSIQAWRTWAAD
LPEDCAYRNCGTLWLAADAAELAEAERKRQALLAAGVACEMLDAARLRDLEPVLRPGLAGALKVPGDGILYA
PNAARWLLERAGPRLLRLHAEVSEVDGSRLRLADGRWLSAEALVLANGIHAGELCAELPIRPKKGHLLITDR
YPGTLRHQLVELGYVSSAHASSGTSVAFNAQPRPTGQIFLGSSRQFDTLDPQVEGPVLARMLRRALDYLPGL
AGLNAIRAWTGFRAATPDGLPLLGEHPAQPGLWLAVGHEGLGVTTAPGSARLLAAQLFGETPPLDPTPYLPQ
RFLSSSGSARP*
AnnotationID:1885GeneID:1876
AnnotatorUID: diggins
Modification Date/Time: 2005-05-25 07:07:18
Gene Name:
Confidence Code:3
GeneProduct:putative D-amino acid oxidase
Cell Localization:()
Synonyms:PA1267
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(2) Amino acid biosynthesis and metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0665
Secondary Functional Category(ies):putative enzyme
EC Number:1.4.3.3
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAM37400.1| (AE011895) D-amino acid oxidase [Xanthomonas axonopodis pv. citri
           str. 306]
          Length = 383

 Score =  353 bits (906), Expect = 9e-97
 Identities = 190/362 (52%), Positives = 240/362 (66%), Gaps = 7/362 (1%)

>gb|AAM41692.1| (AE012352) D-amino acid oxidase [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
          Length = 389

 Score =  348 bits (894), Expect = 2e-95
 Identities = 189/362 (52%), Positives = 240/362 (66%), Gaps = 7/362 (1%)








 
Structural Features:
COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) 
[Amino acid transport and metabolism]
CD-Length = 387 residues,  97.9% aligned
Score =  158 bits (401), Expect = 8e-40
Identities = 133/387 (34%), Positives = 176/387 (45%), Gaps = 33/387 (8%)






   
Genomic Context:






   
Comment:


















    ReferenceID:14451




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20902




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37522




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1876_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1876
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3315
                           PA1267_tr
                           translation of PA1267
                           371
                           94.87
                           96.76
                           0
                           1816.0
     

     
     
102827
                           gb|AAG04656.1|AE004556_6
                           (AE004556) hypothetical protein PA1267 [Pseudomonas aeruginosa PAO1]
                           371
                           94.60
                           96.76
                           0
                           1813.0
     

     
     
102828
                           emb|CAE14535.1|
                           (BX571866) unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1]
                           375
                           51.20
                           67.20
                           4
                           994.0
     

     
     
102829
                           gb|AAM37400.1|
                           (AE011895) D-amino acid oxidase [Xanthomonas axonopodis pv. citri str. 306]
                           389
                           48.84
                           62.46
                           24
                           908.0
     

     
     
102830
                           gb|AAM41692.1|
                           (AE012352) D-amino acid oxidase [Xanthomonas campestris pv. campestris str. ATCC 33913]
                           395
                           47.84
                           61.51
                           30
                           899.0
     

     






      

          
GC ORFID: 44878How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1267Glimmer Score: 

          
Start: 696755Stop: 695640

          
Length: 1116


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1267 translation of PA1267Homolog Bit Score 704.0

          
Other Homologs:  t_PA1267 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGAACGCCGAGGTCATCGTGGTCGGCGCCGGCATCGTCGGCAGCGCCTGCGCCCATGAACTGGCGTGTCGC 
GGCCTCGACGTGCTGGTGCTGGACAGCCGCCGCGGCGGCGCCACCGCGGTGGGCATGGGGCACCTGGTGGCG 
ATGGACGACAACCCGGCCGAACTGGCCCTCAGCGACTACTCGATCCAGGCCTGGCGCACCTGGGCGGCGGAT 
CTGCCGGAAGACTGCGCGTACCGCAATTGCGGCACCCTCTGGCTGGCCGCCGACGCCGCCGAACTCGCCGAA 
GCCGAGCGCAAGCGCCAGGCCCTGCTGGCCGCCGGCGTCGCCTGCGAGATGCTCGACGCCGCGCGCCTGCGT 
GACCTGGAACCGGTCTTGCGGCCAGGCCTCGCCGGCGCCCTGAAGGTGCCGGGCGACGGCATCCTCTACGCG 
CCCAACGCGGCGCGCTGGCTGCTCGAACGAGCCGGCCCGCGCCTGCTTCGATTGCACGCCGAAGTCAGCGAA 
GTGGACGGCAGCCGCCTGCGCCTGGCCGACGGCCGCTGGCTGAGCGCCGAGGCGCTGGTGCTGGCCAACGGC 
ATCCATGCCGGCGAGCTGTGCGCGGAGCTGCCGATCCGCCCGAAGAAAGGCCACCTGCTGATCACCGACCGC 
TATCCCGGCACCCTCCGCCATCAACTGGTGGAACTCGGCTATGTCAGCAGCGCCCACGCCAGCAGCGGTACC 
TCGGTAGCCTTCAACGCCCAGCCGCGCCCCACCGGGCAGATCTTCCTCGGCTCCTCGCGGCAGTTCGACACG 
CTCGACCCGCAGGTGGAAGGCCCGGTGCTGGCGCGCATGCTGCGGCGTGCCCTGGACTACCTGCCGGGGCTC 
GCCGGCCTCAATGCGATCCGTGCCTGGACCGGCTTCCGCGCCGCCACTCCGGACGGCCTGCCGCTGCTCGGC 
GAGCACCCGGCGCAGCCGGGCCTGTGGCTGGCGGTCGGCCACGAGGGCCTGGGCGTGACCACCGCGCCGGGC 
AGCGCGCGCCTGCTCGCCGCCCAGTTGTTCGGCGAAACGCCGCCGCTGGATCCCACGCCTTATCTGCCGCAA 
CGCTTCCTCTCCAGCTCCGGGAGTGCCCGGCCATGA