ViewGene
Locus Name:
GeneID:
Location:

GeneID:1875
TrivialName: PA14_51300
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_51300
PAO1 Ortholog Locus:PA1007
Sequence Length:1074
Protein Length:357
Start: 4559040
Stop: 4557967
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04396.1|AE004533_7 (AE004533) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 357/357 (100%), Positives = 357/357 (100%)
Sequence:
ATGATCAAGGTGTTACGCGACTGGATGCAGCGCTACTTCTCCGACGAGGAGGCCGTGGTGCTGGCGATCATG
CTGGTGCTCGGCTTCAGCGTCATCCTCGCCTTCGGCGGGATGCTCGCGCCGGTACTGGCGGCGATGGTGATC
GCCTTCCTGATCCAGGGCGTGGTCGGCATGCTGGAACGCTTCCGGGTGCCGCACCTGTTCGCCGTGTGGCTG
GTCTACAGCTTGTTCCTCGGCTTGCTGGCGCTGTTCCTGGTGGTCCTGCTGCCGCTGCTCTGGCAGCAATTG
TTCACCCTGTTCAACGAACTGCCGCGGATGCTCGGCGAATGGCAGAGCGTGCTGCTGATGCTGCCCGAGCGC
TATCCCAGCCTGATCAGCGAGGAGCAGGTGCTCAAGGCCATCGAGACCGCGCGCGGCGAATTCGGCCAGATC
GGCCAGTGGGCGCTGACCTCGTCGCTGGCCAGCCTGCCGGTGGTGGTGAACGTCATGATCTACCTGGTGCTG
GTGCCGATCCTGGTGTTCTTCTTCCTCAAGGACAAGAAGCGCTTCCATACCTGGTTCCACCGCTACCTGCCG
CGCGAGCGCGGGCTGATGAAACAGGTCTGGGCCGAGATGAACCAGCAGATCGCCAATTACATTCGCGGCAAG
GTCATCGAGATCGTCATTACCGGCGCGGTGACCTACATCGCCTTCGCCTACCTGGGGCTCAACTACGCAGCG
CTGCTGGCCCTGCTGGTCGGCCTGTCGGTGGTGGTGCCGTACATCGGCGCGGTGGTGGTGAGCGTACCGGTG
GCGATGATCGCCTTCTTCCAGTGGGGCTGGAGCGACCAGTTCATCTACCTGATGGTGGCCCACGCGATCATC
CAGGCGCTGGATGGCAACGTGCTGGTGCCGCTGCTGTTCTCCGAGGCGGTGAACCTGCACCCGGTGGCGATC
ATCTGCGCGGTGTTGCTGTTCGGCGGGCTCTGGGGCTTCTGGGGCGTGTTCTTCGCGATCCCCCTGGCGACC
CTGGTGAAAGCGGTGCTGGATGCCTGGCCCAAGGACCTTCCCGAGACTCCGGCAGCCACGCGATAG
Translation:
MIKVLRDWMQRYFSDEEAVVLAIMLVLGFSVILAFGGMLAPVLAAMVIAFLIQGVVGMLERFRVPHLFAVWL
VYSLFLGLLALFLVVLLPLLWQQLFTLFNELPRMLGEWQSVLLMLPERYPSLISEEQVLKAIETARGEFGQI
GQWALTSSLASLPVVVNVMIYLVLVPILVFFFLKDKKRFHTWFHRYLPRERGLMKQVWAEMNQQIANYIRGK
VIEIVITGAVTYIAFAYLGLNYAALLALLVGLSVVVPYIGAVVVSVPVAMIAFFQWGWSDQFIYLMVAHAII
QALDGNVLVPLLFSEAVNLHPVAIICAVLLFGGLWGFWGVFFAIPLATLVKAVLDAWPKDLPETPAATR*
AnnotationID:1884GeneID:1875
AnnotatorUID: danlee
Modification Date/Time: 2004-05-17 16:04:22
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA1007, perM
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0628, pfam01594
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG0628, PerM, Predicted permease [General function prediction only]. Score: 158, 8e-40
pfam01594, UPF0118, Domain of unknown function DUF20. Score: 153, 
3e-38






   
Genomic Context:






   
Comment:


















    ReferenceID:3753




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20900




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1875
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3314
                           PA1007_tr
                           translation of PA1007
                           357
                           99.99
                           99.99
                           0
                           1816.0
     

     
     
102801
                           gb|AAG04396.1|AE004533_7
                           (AE004533) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           357
                           99.99
                           99.99
                           0
                           1816.0
     

     
     
102802
                           gb|AAN66858.1|AE016314_5
                           (AE016778) permease PerM, putative [Pseudomonas putida KT2440]
                           358
                           73.46
                           84.91
                           3
                           1366.0
     

     
     
102803
                           gb|AAO57417.1|
                           (AE016870) membrane protein, PerM family [Pseudomonas syringae pv. tomato str. DC3000]
                           357
                           71.70
                           84.59
                           1
                           1341.0
     

     
     
102804
                           gb|AAF95307.1|
                           (AE004288) permease PerM, putative [Vibrio cholerae O1 biovar eltor str. N16961]
                           357
                           52.94
                           68.90
                           3
                           932.0
     

     






      

          
GC ORFID: 44877How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1007Glimmer Score: 

          
Start: 394867Stop: 395940

          
Length: 1074


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA1007 translation of PA1007Homolog Bit Score 704.0

          
Other Homologs:  psyr_15may02_Scaffold10_revised_gene1723 (ORF: BLASTX 523.0), t_PA1007 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGATCAAGGTGTTACGCGACTGGATGCAGCGCTACTTCTCCGACGAGGAGGCCGTGGTGCTGGCGATCATG 
CTGGTGCTCGGCTTCAGCGTCATCCTCGCCTTCGGCGGGATGCTCGCGCCGGTACTGGCGGCGATGGTGATC 
GCCTTCCTGATCCAGGGCGTGGTCGGCATGCTGGAACGCTTCCGGGTGCCGCACCTGTTCGCCGTGTGGCTG 
GTCTACAGCTTGTTCCTCGGCTTGCTGGCGCTGTTCCTGGTGGTCCTGCTGCCGCTGCTCTGGCAGCAATTG 
TTCACCCTGTTCAACGAACTGCCGCGGATGCTCGGCGAATGGCAGAGCGTGCTGCTGATGCTGCCCGAGCGC 
TATCCCAGCCTGATCAGCGAGGAGCAGGTGCTCAAGGCCATCGAGACCGCGCGCGGCGAATTCGGCCAGATC 
GGCCAGTGGGCGCTGACCTCGTCGCTGGCCAGCCTGCCGGTGGTGGTGAACGTCATGATCTACCTGGTGCTG 
GTGCCGATCCTGGTGTTCTTCTTCCTCAAGGACAAGAAGCGCTTCCATACCTGGTTCCACCGCTACCTGCCG 
CGCGAGCGCGGGCTGATGAAACAGGTCTGGGCCGAGATGAACCAGCAGATCGCCAATTACATTCGCGGCAAG 
GTCATCGAGATCGTCATTACCGGCGCGGTGACCTACATCGCCTTCGCCTACCTGGGGCTCAACTACGCAGCG 
CTGCTGGCCCTGCTGGTCGGCCTGTCGGTGGTGGTGCCGTACATCGGCGCGGTGGTGGTGAGCGTACCGGTG 
GCGATGATCGCCTTCTTCCAGTGGGGCTGGAGCGACCAGTTCATCTACCTGATGGTGGCCCACGCGATCATC 
CAGGCGCTGGATGGCAACGTGCTGGTGCCGCTGCTGTTCTCCGAGGCGGTGAACCTGCACCCGGTGGCGATC 
ATCTGCGCGGTGTTGCTGTTCGGCGGGCTCTGGGGCTTCTGGGGCGTGTTCTTCGCGATCCCCCTGGCGACC 
CTGGTGAAAGCGGTGCTGGATGCCTGGCCCAAGGACCTTCCCGAGACTCCGGCAGCCACGCGATAG