ViewGene
Locus Name:
GeneID:
Location:

GeneID:1872
TrivialName: PA14_30490
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_30490
PAO1 Ortholog Locus:PA2598
Sequence Length:1083
Protein Length:360
Start: 2640027
Stop: 2641109
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05986.1|AE004688_8 (AE004688) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 357/360 (99%), Positives = 358/360 (99%)
Sequence:
ATGAGCATCCAGTTTCTCGGCATGATCGGCCATCGCCTGGCCTCGGAGACCCTCGCGCCGGTCGGACCTATC
CTCGACAAGCCTTACATCGCCGCTTTCGCACGCGCCCACGAAGAGGCCGGCTTCGATCGAATCCTGGTCGGC
TACTGGTCGGACCAGCCGGATGGATTCCTGGTGGCCGCCGCCGCTGGCCTGGCCACTTCCCGGATCGGTCTG
CTGCTGGCGCACCGCCCCGGTTTCGTCGCCCCGACCCTGGCCGCGCGCAAGCTGGCGACCCTCGAACACCTC
CTCGACGGGCGCCTGGCGGTGCATATCATCAGCGGCGGCAGCGACGCCGACCAGCGCAAGGACGGCGATTAT
CTCGACCACGACCAGCGCTATGCCCGCAGCGACGAATTCATCGAACTGCTCAAGCGCACCTGGACCAGCACC
GAACCCTTCGATTTCCACGGCGCGTACTACCGCGTGGAGCACGCCTTCTCGGCCATCCGTCCACAGCAGAAA
CCGCACATTCCGGTGTATTTCGGCGGCTCCTCGGAAGCCGCGCTGAAGGTCGCCGGCAAGCAGGCCGATGTG
TTCATGCTCTGGGGCGAACCTCTGGCACAGGCCGCCGAAACCATCTCCGCTGTGCGCGAACAGGCGCGCTCG
AATAGTCGCGAAGTGGAATTCAGCCTGTCGTTCCGGCCCATCCTCGGGCGCACGGAGGACGAGGCCTGGGCC
AAGGCCGAGGCGATACGCGCAAGCGCCGGCGCGCGCCTGGGCGAGGCCGGCTTCCCCAAGGGCAAGCCGCAG
AGCGTCGGCGCCCAGCGTCTGCTCAAGGCGGTGGAGCAGGGCGAGCGCCTCGACGAGCGCCTTTGGACCGGA
ATCGCCAGGCTGGTCGGTGGCGGGCACAACTCCACCGCCCTGGTCGGTACCGCGGAACAGGTGGCCGACGCG
CTGCTCGCCTACTACGACCTGGGCGTGCGCAATATCCTCATTCGCGGTTTCGATCCCCTCGCCGATGCCGTG
GAATATGGCCGCGAGCTGATCCCGCTGACCCGCGCCAAAGTCGCCGAGCGCGAGCGCCGGCGCGCCACGGCC
TGA
Translation:
MSIQFLGMIGHRLASETLAPVGPILDKPYIAAFARAHEEAGFDRILVGYWSDQPDGFLVAAAAGLATSRIGL
LLAHRPGFVAPTLAARKLATLEHLLDGRLAVHIISGGSDADQRKDGDYLDHDQRYARSDEFIELLKRTWTST
EPFDFHGAYYRVEHAFSAIRPQQKPHIPVYFGGSSEAALKVAGKQADVFMLWGEPLAQAAETISAVREQARS
NSREVEFSLSFRPILGRTEDEAWAKAEAIRASAGARLGEAGFPKGKPQSVGAQRLLKAVEQGERLDERLWTG
IARLVGGGHNSTALVGTAEQVADALLAYYDLGVRNILIRGFDPLADAVEYGRELIPLTRAKVAERERRRATA
*
AnnotationID:1881GeneID:1872
AnnotatorUID: diggins
Modification Date/Time: 2005-03-07 10:10:50
Gene Name:
Confidence Code:3
GeneProduct:putative lavin-dependent oxidoreductase
Cell Localization:()
Synonyms:PA2598
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:putative alkansulfonate monooxygenase
Functional Category Confidence Code:5
COGs:COG2141
Secondary Functional Category(ies):central intermediary metabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO55315.1| (AE016862) alkanesulfonate monooxygenase, putative [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 362

 Score =  378 bits (971), Expect = e-104
 Identities = 187/356 (52%), Positives = 248/356 (69%)

>gb|AAN68826.1|AE016515_5 (AE016786) alkansulfonate monooxygenase, putative [Pseudomonas
           putida KT2440]
          Length = 366

 Score =  369 bits (947), Expect = e-101
 Identities = 194/368 (52%), Positives = 256/368 (69%), Gaps = 14/368 (3%)

>dbj|BAC74407.1| (AP005047) putative monooxygenase [Streptomyces avermitilis
           MA-4680]
          Length = 366

 Score =  322 bits (825), Expect = 2e-87
 Identities = 172/366 (46%), Positives = 225/366 (61%), Gaps = 6/366 (1%)








 
Structural Features:
COG2141, COG2141, Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin 
reductase and related flavin-dependent oxidoreductases 
[Energy production and conversion]
CD-Length = 336 residues,  99.7% aligned
Score =  171 bits (434), Expect = 1e-43
Identities = 102/350 (29%), Positives = 145/350 (41%), Gaps = 24/350 (6%)








   
Genomic Context:






   
Comment:


















    ReferenceID:3747




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20894




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33168




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1872_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1872
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3310
                           PA2598_tr
                           translation of PA2598
                           360
                           99.16
                           99.44
                           0
                           1819.0
     

     
     
102762
                           gb|AAG05986.1|AE004688_8
                           (AE004688) hypothetical protein PA2598 [Pseudomonas aeruginosa PAO1]
                           360
                           99.16
                           99.44
                           0
                           1819.0
     

     
     
102764
                           gb|AAN68826.1|AE016515_5
                           (AE016786) alkansulfonate monooxygenase, putative [Pseudomonas putida KT2440]
                           371
                           52.29
                           69.00
                           16
                           959.0
     

     
     
102763
                           gb|AAO55315.1|
                           (AE016862) alkanesulfonate monooxygenase, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           362
                           52.20
                           68.78
                           2
                           967.0
     

     
     
3311
                           PA2600_tr
                           translation of PA2600
                           362
                           50.82
                           67.12
                           9
                           943.0
     

     






      

          
GC ORFID: 44874How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2598Glimmer Score: 

          
Start: 2313899Stop: 2312817

          
Length: 1083


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2598 translation of PA2598Homolog Bit Score 705.0

          
Other Homologs:  psyr_15may02_Scaffold8_revised_gene7653 (ORF: BLASTX 387.0), t_PA2600 (ORF: BLASTX 368.0), t_PA2598 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCATCCAGTTTCTCGGCATGATCGGCCATCGCCTGGCCTCGGAGACCCTCGCGCCGGTCGGACCTATC 
CTCGACAAGCCTTACATCGCCGCTTTCGCACGCGCCCACGAAGAGGCCGGCTTCGATCGAATCCTGGTCGGC 
TACTGGTCGGACCAGCCGGATGGATTCCTGGTGGCCGCCGCCGCTGGCCTGGCCACTTCCCGGATCGGTCTG 
CTGCTGGCGCACCGCCCCGGTTTCGTCGCCCCGACCCTGGCCGCGCGCAAGCTGGCGACCCTCGAACACCTC 
CTCGACGGGCGCCTGGCGGTGCATATCATCAGCGGCGGCAGCGACGCCGACCAGCGCAAGGACGGCGATTAT 
CTCGACCACGACCAGCGCTATGCCCGCAGCGACGAATTCATCGAACTGCTCAAGCGCACCTGGACCAGCACC 
GAACCCTTCGATTTCCACGGCGCGTACTACCGCGTGGAGCACGCCTTCTCGGCCATCCGTCCACAGCAGAAA 
CCGCACATTCCGGTGTATTTCGGCGGCTCCTCGGAAGCCGCGCTGAAGGTCGCCGGCAAGCAGGCCGATGTG 
TTCATGCTCTGGGGCGAACCTCTGGCACAGGCCGCCGAAACCATCTCCGCTGTGCGCGAACAGGCGCGCTCG 
AATAGTCGCGAAGTGGAATTCAGCCTGTCGTTCCGGCCCATCCTCGGGCGCACGGAGGACGAGGCCTGGGCC 
AAGGCCGAGGCGATACGCGCAAGCGCCGGCGCGCGCCTGGGCGAGGCCGGCTTCCCCAAGGGCAAGCCGCAG 
AGCGTCGGCGCCCAGCGTCTGCTCAAGGCGGTGGAGCAGGGCGAGCGCCTCGACGAGCGCCTTTGGACCGGA 
ATCGCCAGGCTGGTCGGTGGCGGGCACAACTCCACCGCCCTGGTCGGTACCGCGGAACAGGTGGCCGACGCG 
CTGCTCGCCTACTACGACCTGGGCGTGCGCAATATCCTCATTCGCGGTTTCGATCCCCTCGCCGATGCCGTG 
GAATATGGCCGCGAGCTGATCCCGCTGACCCGCGCCAAAGTCGCCGAGCGCGAGCGCCGGCGCGCCACGGCC 
TGA