ViewGene
Locus Name:
GeneID:
Location:

GeneID:1871
TrivialName: PA14_59310
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_59310
PAO1 Ortholog Locus:
Sequence Length:1080
Protein Length:359
Start: 5283717
Stop: 5284796
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAP84206.1| (AY273869) PilR2 [Pseudomonas aeruginosa]
Identities = 359/359 (100%), Positives = 359/359 (100%)
Sequence:
ATGGGGGGCTTCTGGGAGCAGTTGCAGTTCGCCTTCTACAGCAAGCAGTTCGGCCGCAAGGAACGCCTGCAG
TTCTACGAAAGCATGTCCACCCTGCTCGAAAACGGGGTCCCGTTGAAGGATGCTGTGGCAGAGGTGCACAAG
ATCTTCGCTCATGAGGGGCAGCATCCGTTTCATCCGGTGGCCATCGCCAGTCGCGAAGCGCTGATGGGGCTG
TCCAACGGCAAGCGTCTGGCCACCGCCATGGCGCTCTATCTCCCCGCCCAGGAGCGAGCGTTGATCGAGGCC
GGCGAGATGAGCGGCAACCTGGTTCAGGCCATGGGCGATGCCGTCTCCCTGGTCGAGGCCCAGGCCAGGATC
CGCGCCACCATCTGGCAGGCGCTGCTCTACCCCTCGGCGCTGTCCGCCATGATGGTGTTCCTGCTGTGCATC
GTGGCCTATCGCATGGTCCCCAGCCTGGCCAGGCTCTCCGACCCAGTCACCTGGACCGGCCCGCTCGCCACG
CTCAACGCCATTGCCAGCTTCGTCACAGGACCTGGTATCTACGTTCTGGTCGCCGTCATCACCCTCACGGTG
GTGGTCATCGTCACGTTGCCGACCTACCGCTGGAAAGGCCGGGTCTGGCTGGACCGGACGCTGCCGCCCTGG
TCCATCTACCGCATGCTCCAGGGCACCACCTTCCTGCTGAACATGGCGGTCATGCTCAACGCCGGCATACGC
CCCTACGACAGCCTGGCCAGCATGATCAAGATCTCCCCGCCCTGGCTGAAGCAGCGCTTGGAAGCTGCCCGC
TACGGCGTGGGCCTGGGCCAGAACTTGGGTGTTGCCCTTCGCAGCGCCGGTCACGATTTCCCCGACCGGCAG
GCCATCCAGTACCTGTGCATCCTCGCCAACCGGGGAGGCTTCTCCGAGGCGCTGGTCAAGTTCAGCCGCCGC
TGGCAGGAGACCAGCCTCAAGCAGATCGAGCTGGCCGCCGGGCTGGTGAAGAACTTCGCCCTGATCTTCATC
GGCGCGCTGATGATCCTGGTCCTGCTCGGCGCCTACCAGGCACAGCAGCTCATCCAATCCATGAACCACTGA
Translation:
MGGFWEQLQFAFYSKQFGRKERLQFYESMSTLLENGVPLKDAVAEVHKIFAHEGQHPFHPVAIASREALMGL
SNGKRLATAMALYLPAQERALIEAGEMSGNLVQAMGDAVSLVEAQARIRATIWQALLYPSALSAMMVFLLCI
VAYRMVPSLARLSDPVTWTGPLATLNAIASFVTGPGIYVLVAVITLTVVVIVTLPTYRWKGRVWLDRTLPPW
SIYRMLQGTTFLLNMAVMLNAGIRPYDSLASMIKISPPWLKQRLEAARYGVGLGQNLGVALRSAGHDFPDRQ
AIQYLCILANRGGFSEALVKFSRRWQETSLKQIELAAGLVKNFALIFIGALMILVLLGAYQAQQLIQSMNH*
AnnotationID:1880GeneID:1871
AnnotatorUID: diggins
Modification Date/Time: 2006-01-31 07:07:32
Gene Name:pilR2
Confidence Code:2
GeneProduct:type IV B pilus Protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(16) Motility & Attachment
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>dbj|BAB91688.1| (AP005147) integral membrane protein [Salmonella typhimurium]
          Length = 365

 Score =  202 bits (515), Expect = 2e-51
 Identities = 118/356 (33%), Positives = 197/356 (55%), Gaps = 10/356 (2%)

>gb|AAF81214.1|AF247502_9 (AF247502) PilR [Salmonella enterica subsp. enterica serovar
           Dublin]
          Length = 361

 Score =  189 bits (480), Expect = 2e-47
 Identities = 117/362 (32%), Positives = 196/362 (54%), Gaps = 20/362 (5%)

>gb|AAL18833.1|AF422146_12 (AY258503) PilR [Escherichia coli]
          Length = 366

 Score =  144 bits (364), Expect = 6e-34
 Identities = 91/344 (26%), Positives = 173/344 (50%), Gaps = 5/344 (1%)







 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:3745




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20892




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:38299




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1871_cdd.html


    		




 
URL:

















    ReferenceID:38300




  
Author/Investigator(s):
        Ishimoto KS, Lory S.





  
Title:
        Identification of pilR, which encodes a transcriptional activator of the Pseudomonas aeruginosa pilin gene.




  
PubMed:
        1317379


MedLine:
        




    
Source:
J Bacteriol. 1992 Jun;174(11):3514-21.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.pubmedcentral.gov/articlerender.fcgi?tool=pubmed&pubmedid=1317379

















    ReferenceID:38301




  
Author/Investigator(s):
        Farinha MA, Ronald SL, Kropinski AM, Paranchych W.





  
Title:
        Localization of the virulence-associated genes pilA, pilR, rpoN, fliA, fliC, ent, and fbp on the physical map of Pseudomonas aeruginosa PAO1 by pulsed-field electrophoresis.




  
PubMed:
        8454366


MedLine:
        




    
Source:
Infect Immun. 1993 Apr;61(4):1571-5.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.pubmedcentral.gov/articlerender.fcgi?tool=pubmed&pubmedid=8454366









           
Homologs By Global Alignment 

           

       



     
Gene ID:1871
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
102761
                           gb|AAP84206.1|
                           (AY273869) PilR2 [Pseudomonas aeruginosa]
                           359
                           99.99
                           99.99
                           0
                           1823.0
     

     






      

          
GC ORFID: 44873How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_RL081Glimmer Score: 

          
Start: 4547396Stop: 4548475

          
Length: 1080


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_RL081 pilR 359 Homolog: PilR / Type IVB pilus biosynthesis; Pathogenicity-related / S.typhimurium / plasmid R64 (BAB91688) translation of RL081Homolog Bit Score 706.0

          
Other Homologs:  psyr_15may02_Scaffold10_revised_gene1590 (ORF: BLASTX 300.0), t_RL081 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGGGGGCTTCTGGGAGCAGTTGCAGTTCGCCTTCTACAGCAAGCAGTTCGGCCGCAAGGAACGCCTGCAG 
TTCTACGAAAGCATGTCCACCCTGCTCGAAAACGGGGTCCCGTTGAAGGATGCTGTGGCAGAGGTGCACAAG 
ATCTTCGCTCATGAGGGGCAGCATCCGTTTCATCCGGTGGCCATCGCCAGTCGCGAAGCGCTGATGGGGCTG 
TCCAACGGCAAGCGTCTGGCCACCGCCATGGCGCTCTATCTCCCCGCCCAGGAGCGAGCGTTGATCGAGGCC 
GGCGAGATGAGCGGCAACCTGGTTCAGGCCATGGGCGATGCCGTCTCCCTGGTCGAGGCCCAGGCCAGGATC 
CGCGCCACCATCTGGCAGGCGCTGCTCTACCCCTCGGCGCTGTCCGCCATGATGGTGTTCCTGCTGTGCATC 
GTGGCCTATCGCATGGTCCCCAGCCTGGCCAGGCTCTCCGACCCAGTCACCTGGACCGGCCCGCTCGCCACG 
CTCAACGCCATTGCCAGCTTCGTCACAGGACCTGGTATCTACGTTCTGGTCGCCGTCATCACCCTCACGGTG 
GTGGTCATCGTCACGTTGCCGACCTACCGCTGGAAAGGCCGGGTCTGGCTGGACCGGACGCTGCCGCCCTGG 
TCCATCTACCGCATGCTCCAGGGCACCACCTTCCTGCTGAACATGGCGGTCATGCTCAACGCCGGCATACGC 
CCCTACGACAGCCTGGCCAGCATGATCAAGATCTCCCCGCCCTGGCTGAAGCAGCGCTTGGAAGCTGCCCGC 
TACGGCGTGGGCCTGGGCCAGAACTTGGGTGTTGCCCTTCGCAGCGCCGGTCACGATTTCCCCGACCGGCAG 
GCCATCCAGTACCTGTGCATCCTCGCCAACCGGGGAGGCTTCTCCGAGGCGCTGGTCAAGTTCAGCCGCCGC 
TGGCAGGAGACCAGCCTCAAGCAGATCGAGCTGGCCGCCGGGCTGGTGAAGAACTTCGCCCTGATCTTCATC 
GGCGCGCTGATGATCCTGGTCCTGCTCGGCGCCTACCAGGCACAGCAGCTCATCCAATCCATGAACCACTGA