ViewGene
Locus Name:
GeneID:
Location:

GeneID:1870
TrivialName: PA14_07850
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_07850
PAO1 Ortholog Locus:PA0602
Sequence Length:1035
Protein Length:344
Start: 676336
Stop: 677370
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03991.1|AE004496_7 (AE004496) probable binding protein component of ABC transporter [Pseudomonas aeruginosa PAO1]
Identities = 342/344 (99%), Positives = 343/344 (99%)
Sequence:
ATGTTGCCAGCCATGAGGACGGGCCTGTTGTGCGCCCTTCTCGGAGTTACCGCGCCCGCCTGGGCGGAATAC
GTGACCGTGATTTCCTTCGGCGGCGCCAACAAGGAAGCCCAGGAAACCGCGTTCTACAAACCCTTCAAGAGC
GCCACCGGCAATCGCGTGGTGCATGGCTCCTACAATGGCGACCTGGCCAAGCTCAAGCGCATGGTGGAGATC
AGCCACGTCTCCTGGGACGTGGTGGAAGTCGAGGCGCCGGAGCTGGCGCGCGGTTGCGAGGAAGGTCTGTTC
GAGAAGCTGGACATGGCGAAGGTCGGCGATCCCGCGGATTTCGTTCCCGGCGCGGTGCAGCCCTGCGGAGTC
GGCATCTTCGTCTGGACCACGCTGCTTGCCTACAACCCCGGCAAGGTTGCGGGCAGCCCGCAGGGCTGGGCG
GATTTCTGGGACGTGAAGAAGTTTCCCGGCAAGCGCGGCCTGCGCTGGGGCGCCAAGTACAGCCTGGAGTTC
GCCCTGATGGCCGATGGCGTGGCGCCGAAGGACGTCTACCAGACGCTGGCGACGCCCGCCGGCGTCGAGCGG
GCATTCCGCAAGCTCGACGAGCTGAAGCCCTATATCCATTGGTGGAAGTCCGGGCAGGACCCTGTGCGCGAC
CTGGCCGATGGCACGGTGGTGATGAGTTCGGCCTACAACGGGCGGATCGCCGCGGCGCAGGCCGAGAAGCAG
CCCCTGGCAATGGTCTGGAGCGGCGGCGTCTACGATTTCGACTTCTGGGCGCTGCCGGTCGGGGTTTGGAAG
AAGCAGTTGGCCGAGGAGTTCATCCGTTTCGCCAGCCAGCCGGAGCAGCAGAAGGCTTTCGCCGAGAACATC
GCCTACGGCCCGGCCAACCGCAAGGCGGTAGGCCTCCTCGATCCGCAAGTGGCTGCCAGCCTGCCGACCGCG
CCGCAGAACATGCAGAACGCGGTGGGTATGAACGTGGCCTTCTGGGCGGAGCACGGCGAGGCCCTGGAGCAG
CGTTTCCAGAACTGGGCCAAGCGCTGA
Translation:
MLPAMRTGLLCALLGVTAPAWAEYVTVISFGGANKEAQETAFYKPFKSATGNRVVHGSYNGDLAKLKRMVEI
SHVSWDVVEVEAPELARGCEEGLFEKLDMAKVGDPADFVPGAVQPCGVGIFVWTTLLAYNPGKVAGSPQGWA
DFWDVKKFPGKRGLRWGAKYSLEFALMADGVAPKDVYQTLATPAGVERAFRKLDELKPYIHWWKSGQDPVRD
LADGTVVMSSAYNGRIAAAQAEKQPLAMVWSGGVYDFDFWALPVGVWKKQLAEEFIRFASQPEQQKAFAENI
AYGPANRKAVGLLDPQVAASLPTAPQNMQNAVGMNVAFWAEHGEALEQRFQNWAKR*
AnnotationID:1879GeneID:1870
AnnotatorUID: diggins
Modification Date/Time: 2005-03-29 12:12:55
Gene Name:
Confidence Code:3
GeneProduct:putative binding protein component of ABC transporter
Cell Localization:()
Synonyms:PA0602
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:putative polyamine ABC transporter, periplasmic polyamine-binding protein
Functional Category Confidence Code:5
COGs:COG0687
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO54105.1| (AE016857) polyamine ABC transporter, periplasmic polyamine-binding
           protein [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 344

 Score =  423 bits (1088), Expect = e-118
 Identities = 203/341 (59%), Positives = 256/341 (75%), Gaps = 5/341 (1%)

>gb|AAN66042.1|AE016233_8 (AE016775) polyamine ABC transporter, periplasmic polyamine-binding
           protein [Pseudomonas putida KT2440]
          Length = 344

 Score =  421 bits (1083), Expect = e-117
 Identities = 203/343 (59%), Positives = 258/343 (75%), Gaps = 6/343 (1%)

>gb|AAM84963.1|AE013742_5 (AE013742) putative substrate-binding protein of ABC transporter
           [Yersinia pestis KIM]
          Length = 342

 Score =  373 bits (957), Expect = e-102
 Identities = 178/336 (52%), Positives = 223/336 (66%)








 
Structural Features:
COG0687, PotD, Spermidine/putrescine-binding periplasmic protein 
[Amino acid transport and metabolism]
CD-Length = 363 residues,  96.7% aligned
Score =  195 bits (497), Expect = 6e-51
Identities = 103/364 (28%), Positives = 152/364 (41%), Gaps = 38/364 (10%)







   
Genomic Context:






   
Comment:


















    ReferenceID:3743




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20890




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33896




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1870_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1870
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3306
                           PA0602_tr
                           translation of PA0602
                           344
                           99.41
                           99.70
                           0
                           1822.0
     

     
     
102746
                           gb|AAG03991.1|AE004496_7
                           (AE004496) probable binding protein component of ABC transporter [Pseudomonas aeruginosa PAO1]
                           344
                           99.41
                           99.70
                           0
                           1822.0
     

     
     
3307
                           PA0604_tr
                           translation of PA0604
                           354
                           59.60
                           74.01
                           16
                           1141.0
     

     
     
102747
                           gb|AAG03993.1|AE004496_9
                           (AE004496) probable binding protein component of ABC transporter [Pseudomonas aeruginosa PAO1]
                           354
                           59.60
                           74.01
                           16
                           1141.0
     

     
     
102748
                           gb|AAO54105.1|
                           (AE016857) polyamine ABC transporter, periplasmic polyamine-binding protein [Pseudomonas syringae pv. tomato str. DC3000]
                           349
                           58.16
                           73.35
                           10
                           1091.0
     

     






      

          
GC ORFID: 44872How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0602Glimmer Score: 

          
Start: 6477679Stop: 6478713

          
Length: 1035


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0602 translation of PA0602Homolog Bit Score 706.0

          
Other Homologs:  t_PA0604 (ORF: BLASTX 443.0), psyr_15may02_Scaffold13_revised_gene2135 (ORF: BLASTX 422.0), t_PA0602 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTTGCCAGCCATGAGGACGGGCCTGTTGTGCGCCCTTCTCGGAGTTACCGCGCCCGCCTGGGCGGAATAC 
GTGACCGTGATTTCCTTCGGCGGCGCCAACAAGGAAGCCCAGGAAACCGCGTTCTACAAACCCTTCAAGAGC 
GCCACCGGCAATCGCGTGGTGCATGGCTCCTACAATGGCGACCTGGCCAAGCTCAAGCGCATGGTGGAGATC 
AGCCACGTCTCCTGGGACGTGGTGGAAGTCGAGGCGCCGGAGCTGGCGCGCGGTTGCGAGGAAGGTCTGTTC 
GAGAAGCTGGACATGGCGAAGGTCGGCGATCCCGCGGATTTCGTTCCCGGCGCGGTGCAGCCCTGCGGAGTC 
GGCATCTTCGTCTGGACCACGCTGCTTGCCTACAACCCCGGCAAGGTTGCGGGCAGCCCGCAGGGCTGGGCG 
GATTTCTGGGACGTGAAGAAGTTTCCCGGCAAGCGCGGCCTGCGCTGGGGCGCCAAGTACAGCCTGGAGTTC 
GCCCTGATGGCCGATGGCGTGGCGCCGAAGGACGTCTACCAGACGCTGGCGACGCCCGCCGGCGTCGAGCGG 
GCATTCCGCAAGCTCGACGAGCTGAAGCCCTATATCCATTGGTGGAAGTCCGGGCAGGACCCTGTGCGCGAC 
CTGGCCGATGGCACGGTGGTGATGAGTTCGGCCTACAACGGGCGGATCGCCGCGGCGCAGGCCGAGAAGCAG 
CCCCTGGCAATGGTCTGGAGCGGCGGCGTCTACGATTTCGACTTCTGGGCGCTGCCGGTCGGGGTTTGGAAG 
AAGCAGTTGGCCGAGGAGTTCATCCGTTTCGCCAGCCAGCCGGAGCAGCAGAAGGCTTTCGCCGAGAACATC 
GCCTACGGCCCGGCCAACCGCAAGGCGGTAGGCCTCCTCGATCCGCAAGTGGCTGCCAGCCTGCCGACCGCG 
CCGCAGAACATGCAGAACGCGGTGGGTATGAACGTGGCCTTCTGGGCGGAGCACGGCGAGGCCCTGGAGCAG 
CGTTTCCAGAACTGGGCCAAGCGCTGA