ViewGene
Locus Name:
GeneID:
Location:

GeneID:187
TrivialName: PA14_13430
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_13430
PAO1 Ortholog Locus:PA3901
Sequence Length:2355
Protein Length:784
Start: 1156819
Stop: 1154465
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07288.1|AE004807_7 (AE004807) Fe(III) dicitrate transport protein FecA [Pseudomonas aeruginosa PAO1]
Identities = 777/784 (99%), Positives = 778/784 (99%)
Sequence:
ATGTTCCCGTCACGCGCCCTGTCGCCGCTCAGCCGCGCCCTGCTCCTCGCCTGCCTCGGCGGTCCCGTCCTG
GTTTCCGCCGGCAGCGCCTGCGCCGCCGAGATCCGCACCGATGCCCGCCAGTACTACCGGCTGCCCGCCGAG
CCGCTGGAGCAGGCGCTGAACCACCTAGGCCGCCAGGCCGGCGTGCTGATCGCCTTCAGCCCGGAACAGACC
GCCGCGCGGCGCAGCCAGGCGCTGGACGGCGAGTACACCCTGGAGGAAGCCCTGGCCGCCCTGCTCGCCGGC
TCCGGCCTGGAGGCGCGCGCCCGCGGCGACGGCGCCTATACCCTGGAGGCGCTGCCGGTGGAAGACCCGGCC
AACCTGCAGGCGCTCACCGTGGTCGGCGACTGGCTGGCCGACGCCAGCGCCGCCGACGTCTTCGAGCATCCC
GGTGCGCGCGACGTGGTCCGCCGCGAGCAGTTCCAGGCCCAAGGCGCGGCCAGCACCCGCGAAGTGCTGGAG
CGCATTCCCGGGGTCAGCGCGCCGCTCAACAACGGCACCGGCAGCCACGACCTGGCATTGAACTTCGGCATT
CGCGGCCTCAACCCGCGCCTGGCGTCGCGCTCGACGGTGCTGATGGACGGCATCCCGGTGCCCTTCGCCCCC
TACGGCCAGCCACAGTTGTCGCTGGCGCCGGTGTCCATCGGCAACATGGACGCGGTGGACGTGGTCCGCGGC
GGCGGCGCGGTGCGCTACGGGCCGCAGAACGTCGGCGGCATCGTCAACTTCGTGACCCGGGCGATCCCCGAG
GACTTCGCCACCAAGCTCGACGTGCACAGCGAACTCAGCCCCAGCTCCAGCCAGGACGGCCTGAAGACCACC
CACAACGTGCTGATCGGCGGCACCGGCGCCAACGGCCTCGGCGGCGCCCTGCTCTACTCCGGCACCCGCGGC
GGCGATTGGCGCGAGCACAGCGATACGCGGATCGACGACCTGATTCTCAAGGGCCGCTTCCAGCCCAGCGAC
GAACACGCGTTTTCGGCGATGACCCAGTACTACGACGGCGAGGCCGACATGCCCGGCGGCCTCAGCGCCGCG
GCCTACCGCGACGATCCGTACCAGTCGACCCGTCCCTACGACAAGTTCTGGGGCCGCCGTACCCTGGCCAGC
GCCAGCTACGAATACACCCCCAACGCCAGCCAGAAGCTCAACGTCACCGGCTTCTTCACCAAGACCCTGCGC
AGCGGCTACCTCGACCAGGGCCGCAACCTCACCCTGTCGCCGCGCGAATACTGGGTGCGAGGCCTGGAAACC
CGCTTCAGCCAGGGTTTCGAGCTGGGCGAAAGTCGCCACGAAGTGGGCATCGGCCACCGCTACGTCAACGAA
GCCAGCCACGAGCTGCGCTACTGGACCCGCGCCGACAGCGGCCAGCTACCCAGCACCGGCAGCCGCAACGAC
CGCGACACCCGCGGCAGCACCGAAGCCAACGCGTTCTACATCGACGATCGCATCGATATCGGCAACTGGACC
ATCACCCCCGGCATCCGCTACGAGAAGATCGATTCCGAACAGAAGAACCTACTGAAGAACAGCAAGGACAGC
GGCCGCTACAACGCCTCGCTGCCGGCGCTCAACGTGATCTACCACCTCACGCCGAGCTGGAACCTCTACGCC
AACACCGAGGGCTCGTTCGGCACCGTGCAGTACAGCCAGATGGGCAAGGCGGTGCAGAGCGGCGACATCGAG
CCGGAGAAGGCCCGCACCTGGGAACTCGGCAGCCGCTACGACGACGGCATCCTGCGCGCCGAACTGGGCGCC
TTCCTGATCAACTTCGACAACCAGTACGAGAGCAACCAGCAGACCGACAGCGTGACCGCCCGCGGCAAGACC
CGGCACAAGGGCATCGAGGCGGCGATCGCCTACGACCTGGCCGATCTCGACCCGCTGCTCTCCGGCTTCGAC
GTCTATGCCAGCTACGCCTACGTCGACGCGAGCATTCGCGAGGACGGGCCGAACAAGGGCAACCAGGTGCCG
TTCTCCTCGAAGCACAAGGGCACCCTTGGCGCCAACTACCGCACCGGCGCCTGGAGCTACAACCTCGACGGC
AGCTTCCAGACCAGCCAGTACGCCGACAACGCCAACACCGAGAGCGAAAGCGCCGACGGCAGCACCGGGCGG
ATCGCCGGCTGGATGGTCTGGAGCGCGCGCGGCACCTACGACTTCGGCCCGCAACTGAACGACCTCAAGCTC
GGCCTGGGGGTGAAGAACCTGTTCGATCGCCGCTACTACACCCGCTCGTTCGACGACAACAACAAGGGCCTC
TACGTCGGCCAGCCGCGCACCCTGTACGTACAGGCCTCGGTCGGTTTCTGA
Translation:
MFPSRALSPLSRALLLACLGGPVLVSAGSACAAEIRTDARQYYRLPAEPLEQALNHLGRQAGVLIAFSPEQT
AARRSQALDGEYTLEEALAALLAGSGLEARARGDGAYTLEALPVEDPANLQALTVVGDWLADASAADVFEHP
GARDVVRREQFQAQGAASTREVLERIPGVSAPLNNGTGSHDLALNFGIRGLNPRLASRSTVLMDGIPVPFAP
YGQPQLSLAPVSIGNMDAVDVVRGGGAVRYGPQNVGGIVNFVTRAIPEDFATKLDVHSELSPSSSQDGLKTT
HNVLIGGTGANGLGGALLYSGTRGGDWREHSDTRIDDLILKGRFQPSDEHAFSAMTQYYDGEADMPGGLSAA
AYRDDPYQSTRPYDKFWGRRTLASASYEYTPNASQKLNVTGFFTKTLRSGYLDQGRNLTLSPREYWVRGLET
RFSQGFELGESRHEVGIGHRYVNEASHELRYWTRADSGQLPSTGSRNDRDTRGSTEANAFYIDDRIDIGNWT
ITPGIRYEKIDSEQKNLLKNSKDSGRYNASLPALNVIYHLTPSWNLYANTEGSFGTVQYSQMGKAVQSGDIE
PEKARTWELGSRYDDGILRAELGAFLINFDNQYESNQQTDSVTARGKTRHKGIEAAIAYDLADLDPLLSGFD
VYASYAYVDASIREDGPNKGNQVPFSSKHKGTLGANYRTGAWSYNLDGSFQTSQYADNANTESESADGSTGR
IAGWMVWSARGTYDFGPQLNDLKLGLGVKNLFDRRYYTRSFDDNNKGLYVGQPRTLYVQASVGF*
AnnotationID:197GeneID:187
AnnotatorUID: diggins
Modification Date/Time: 2005-04-25 20:08:13
Gene Name:fecA
Confidence Code:2
GeneProduct:Fe(III) dicitrate transport protein FecA
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG4772,pfam00593,COG1629
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN70186.1|AE016658_3 (AE016791) outer membrane iron(III) dicitrate receptor [Pseudomonas
           putida KT2440]
          Length = 774

 Score = 1052 bits (2721), Expect = 0.0
 Identities = 528/782 (67%), Positives = 617/782 (78%), Gaps = 18/782 (2%)

>gb|AAC77247.1| (AE000499) outer membrane receptor; citrate-dependent iron
           transport, outer membrane receptor [Escherichia coli
           K12]
          Length = 774

 Score = 1014 bits (2621), Expect = 0.0
 Identities = 491/780 (62%), Positives = 596/780 (76%), Gaps = 13/780 (1%)








 
Structural Features:
COG4772, FecA, Outer membrane receptor for Fe3+-dicitrate 
[Inorganic ion transport and metabolism]
CD-Length = 753 residues, 100.0% aligned
Score =  818 bits (2115), Expect = 0.0
Identities = 324/784 (41%), Positives = 414/784 (52%), Gaps = 88/784 (11%)

pfam00593, TonB_dep_Rec, TonB dependent receptor. 
CD-Length = 712 residues,  99.9% aligned
Score =  207 bits (528), Expect = 7e-54
Identities = 157/734 (21%), Positives = 245/734 (33%), Gaps = 114/734 (15%)

COG1629, CirA, Outer membrane receptor proteins, mostly Fe transport 
[Inorganic ion transport and metabolism]
CD-Length = 768 residues,  99.9% aligned
Score =  141 bits (356), Expect = 4e-34
Identities = 148/788 (18%), Positives = 241/788 (30%), Gaps = 95/788 (12%)






   
Genomic Context:






   
Comment:


















    ReferenceID:377




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17519




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31666




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:187_cdd.html


    		




 
URL:

















    ReferenceID:34347




  
Author/Investigator(s):
        Pressler U, Staudenmaier H, Zimmermann L, Braun V.





  
Title:
        Genetics of the iron dicitrate transport system of Escherichia coli.




  
PubMed:
        2836368


MedLine:
        




    
Source:
J Bacteriol. 1988 Jun;170(6):2716-24.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=2836368

















    ReferenceID:34348




  
Author/Investigator(s):
        Wagegg W, Braun V.





  
Title:
        Ferric citrate transport in Escherichia coli requires outer membrane receptor protein fecA.




  
PubMed:
        7007312


MedLine:
        




    
Source:
J Bacteriol. 1981 Jan;145(1):156-63.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=7007312









           
Homologs By Global Alignment 

           

       



     
Gene ID:187
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
325
                           PA3901_tr
                           translation of PA3901
                           784
                           99.10
                           99.23
                           0
                           4062.0
     

     
     
21151
                           gb|AAG07288.1|AE004807_7
                           (AE004807) Fe(III) dicitrate transport protein FecA [Pseudomonas aeruginosa PAO1]
                           784
                           99.10
                           99.23
                           0
                           4062.0
     

     
     
21152
                           gb|AAN70186.1|AE016658_3
                           (AE016791) outer membrane iron(III) dicitrate receptor [Pseudomonas putida KT2440]
                           789
                           67.17
                           78.45
                           20
                           2738.0
     

     
     
21153
                           gb|AAO54734.1|
                           (AE016860) iron(III) dicitrate transport protein fecA [Pseudomonas syringae pv. tomato str. DC3000]
                           788
                           65.35
                           78.80
                           10
                           2699.0
     

     
     
21154
                           gb|AAC77247.1|
                           (AE000499) outer membrane receptor; citrate-dependent iron transport, outer membrane receptor [Escherichia coli K12]
                           789
                           62.73
                           76.04
                           20
                           2633.0
     

     






      

          
GC ORFID: 43189How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3901Glimmer Score: 

          
Start: 3797119Stop: 3799473

          
Length: 2355


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3901 translation of PA3901Homolog Bit Score 1569.0

          
Other Homologs:  psyr_15may02_Scaffold3_revised_gene5015 (ORF: BLASTX 1047.0), t_PA3268 (ORF: BLASTX 607.0), t_PA3901 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTTCCCGTCACGCGCCCTGTCGCCGCTCAGCCGCGCCCTGCTCCTCGCCTGCCTCGGCGGTCCCGTCCTG 
GTTTCCGCCGGCAGCGCCTGCGCCGCCGAGATCCGCACCGATGCCCGCCAGTACTACCGGCTGCCCGCCGAG 
CCGCTGGAGCAGGCGCTGAACCACCTAGGCCGCCAGGCCGGCGTGCTGATCGCCTTCAGCCCGGAACAGACC 
GCCGCGCGGCGCAGCCAGGCGCTGGACGGCGAGTACACCCTGGAGGAAGCCCTGGCCGCCCTGCTCGCCGGC 
TCCGGCCTGGAGGCGCGCGCCCGCGGCGACGGCGCCTATACCCTGGAGGCGCTGCCGGTGGAAGACCCGGCC 
AACCTGCAGGCGCTCACCGTGGTCGGCGACTGGCTGGCCGACGCCAGCGCCGCCGACGTCTTCGAGCATCCC 
GGTGCGCGCGACGTGGTCCGCCGCGAGCAGTTCCAGGCCCAAGGCGCGGCCAGCACCCGCGAAGTGCTGGAG 
CGCATTCCCGGGGTCAGCGCGCCGCTCAACAACGGCACCGGCAGCCACGACCTGGCATTGAACTTCGGCATT 
CGCGGCCTCAACCCGCGCCTGGCGTCGCGCTCGACGGTGCTGATGGACGGCATCCCGGTGCCCTTCGCCCCC 
TACGGCCAGCCACAGTTGTCGCTGGCGCCGGTGTCCATCGGCAACATGGACGCGGTGGACGTGGTCCGCGGC 
GGCGGCGCGGTGCGCTACGGGCCGCAGAACGTCGGCGGCATCGTCAACTTCGTGACCCGGGCGATCCCCGAG 
GACTTCGCCACCAAGCTCGACGTGCACAGCGAACTCAGCCCCAGCTCCAGCCAGGACGGCCTGAAGACCACC 
CACAACGTGCTGATCGGCGGCACCGGCGCCAACGGCCTCGGCGGCGCCCTGCTCTACTCCGGCACCCGCGGC 
GGCGATTGGCGCGAGCACAGCGATACGCGGATCGACGACCTGATTCTCAAGGGCCGCTTCCAGCCCAGCGAC 
GAACACGCGTTTTCGGCGATGACCCAGTACTACGACGGCGAGGCCGACATGCCCGGCGGCCTCAGCGCCGCG 
GCCTACCGCGACGATCCGTACCAGTCGACCCGTCCCTACGACAAGTTCTGGGGCCGCCGTACCCTGGCCAGC 
GCCAGCTACGAATACACCCCCAACGCCAGCCAGAAGCTCAACGTCACCGGCTTCTTCACCAAGACCCTGCGC 
AGCGGCTACCTCGACCAGGGCCGCAACCTCACCCTGTCGCCGCGCGAATACTGGGTGCGAGGCCTGGAAACC 
CGCTTCAGCCAGGGTTTCGAGCTGGGCGAAAGTCGCCACGAAGTGGGCATCGGCCACCGCTACGTCAACGAA 
GCCAGCCACGAGCTGCGCTACTGGACCCGCGCCGACAGCGGCCAGCTACCCAGCACCGGCAGCCGCAACGAC 
CGCGACACCCGCGGCAGCACCGAAGCCAACGCGTTCTACATCGACGATCGCATCGATATCGGCAACTGGACC 
ATCACCCCCGGCATCCGCTACGAGAAGATCGATTCCGAACAGAAGAACCTACTGAAGAACAGCAAGGACAGC 
GGCCGCTACAACGCCTCGCTGCCGGCGCTCAACGTGATCTACCACCTCACGCCGAGCTGGAACCTCTACGCC 
AACACCGAGGGCTCGTTCGGCACCGTGCAGTACAGCCAGATGGGCAAGGCGGTGCAGAGCGGCGACATCGAG 
CCGGAGAAGGCCCGCACCTGGGAACTCGGCAGCCGCTACGACGACGGCATCCTGCGCGCCGAACTGGGCGCC 
TTCCTGATCAACTTCGACAACCAGTACGAGAGCAACCAGCAGACCGACAGCGTGACCGCCCGCGGCAAGACC 
CGGCACAAGGGCATCGAGGCGGCGATCGCCTACGACCTGGCCGATCTCGACCCGCTGCTCTCCGGCTTCGAC 
GTCTATGCCAGCTACGCCTACGTCGACGCGAGCATTCGCGAGGACGGGCCGAACAAGGGCAACCAGGTGCCG 
TTCTCCTCGAAGCACAAGGGCACCCTTGGCGCCAACTACCGCACCGGCGCCTGGAGCTACAACCTCGACGGC 
AGCTTCCAGACCAGCCAGTACGCCGACAACGCCAACACCGAGAGCGAAAGCGCCGACGGCAGCACCGGGCGG 
ATCGCCGGCTGGATGGTCTGGAGCGCGCGCGGCACCTACGACTTCGGCCCGCAACTGAACGACCTCAAGCTC 
GGCCTGGGGGTGAAGAACCTGTTCGATCGCCGCTACTACACCCGCTCGTTCGACGACAACAACAAGGGCCTC 
TACGTCGGCCAGCCGCGCACCCTGTACGTACAGGCCTCGGTCGGTTTCTGA