ViewGene

Locus Name:
GeneID:
Location:

GeneID:1867
TrivialName: PA14_16800
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_16800
PAO1 Ortholog Locus:PA3677
Sequence Length:1104
Protein Length:367
Start: 1437645
Stop: 1438748
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07065.1|AE004787_5 (AE004787) probable RND efflux membrane fusion protein precursor [Pseudomonas aeruginosa PAO1]
Identities = 365/367 (99%), Positives = 365/367 (99%)
Sequence:
ATGTACCGCCATATCCCGCTCGTCGCCCTGTCCCTGCTTTCCTCCCTGTTCCTCGCCGCCTGCGGCAACGGC
ACGCCGCCGCCAGCCGCGGCGCGTCCGGCGATCGTCGTCCAGCCCCAGCCGGCGGGGGAGGTGAGCCAGGCC
TTTCCCGGCGAGATCCGCGCCCGCCACGAGCCTGAGCTGGCCTTCCGCATCGGCGGCAAGGTCATCCGCCGG
CTGGTGGAAGTCGGCGAGCGGGTGAAGAAGGACCAGCCCCTGGCCGAACTCGATCCCCAGGACGTGCGCCTG
CAACTGGAGGCGGCGCGGGCCCAGGTCAGTGCCGCCGAGGCCAACCTGCAGACCGTGCGCGCCGAGTACCGG
CGCTACCGCACCTTGCTCGACCGCAACCTGGTCAGCCATTCCCAGTTCGAGAACATCCAGAACAGCTACCGC
GCCGGCGAGGCGCGGTTGAAGCAGATCCGCGCCGAATTCAACGTCGCCGACAACCAGGCCGGCTACGCCGTG
CTGCGCTCGCCCCAGGATGGCGTGATCGCCAGCCGGCGCGTCGAGGTGGGCCAGGTGGTGGCGGCCGGGCAG
ACGGTCTTCAGCCTGGCCGCCGACGGCGAGCGCGAGGTGCTGATCGGCCTGCCGGAACACAGCTTCGAACGT
TTCCGCATCGGCCAGCCGGTGTCGGTCGAACTCTGGTCGCAACGCGACAGACGCTTCGCCGGGCATATCCGC
GAGCTCTCGCCCGCGGCCGATCCGCAATCGCGTACCTTCGCCGCCCGGGTGGCCTTCGACGACCGCGCGACT
CCGGCCGAACTGGGCCAGAGCGCCCGGGTCTACGTCGCCGCCGCCGAGGCGGTGCCGTTATCGGTTCCCTTG
TCGGCGCTGACCGCAGAGGCCGGCCAGGCGTTCGTCTGGGTGGTCGAACCGGGCAGCTCGACCCTGCGCCGG
CAGCCGGTGCGCACCGGTCCCTATGCCGAGGACCGGGTGCCGGTGCTCGAAGGCCTGAAGGCTGGCGACTGG
GTAGTGGCCACCGGGGTCCAGGTGCTTCGCGAAGGGCAGCAGGTGCGTCCGATCGACCGGGCCAACCGCACG
GTGAAACTGGCGGCCAAGGAGTAG
Translation:
MYRHIPLVALSLLSSLFLAACGNGTPPPAAARPAIVVQPQPAGEVSQAFPGEIRARHEPELAFRIGGKVIRR
LVEVGERVKKDQPLAELDPQDVRLQLEAARAQVSAAEANLQTVRAEYRRYRTLLDRNLVSHSQFENIQNSYR
AGEARLKQIRAEFNVADNQAGYAVLRSPQDGVIASRRVEVGQVVAAGQTVFSLAADGEREVLIGLPEHSFER
FRIGQPVSVELWSQRDRRFAGHIRELSPAADPQSRTFAARVAFDDRATPAELGQSARVYVAAAEAVPLSVPL
SALTAEAGQAFVWVVEPGSSTLRRQPVRTGPYAEDRVPVLEGLKAGDWVVATGVQVLREGQQVRPIDRANRT
VKLAAKE*
AnnotationID:1876GeneID:1867
AnnotatorUID: diggins
Modification Date/Time: 2005-06-19 08:08:15
Gene Name:
Confidence Code:3
GeneProduct:putative efflux transmembrane protein
Cell Localization:()
Synonyms:PA3677
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0845
Secondary Functional Category(ies):membrane protein
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN67137.1|AE016342_9 (AE016779) RND membrane fusion protein [Pseudomonas putida KT2440]
          Length = 366

 Score =  486 bits (1251), Expect = e-137
 Identities = 254/367 (69%), Positives = 289/367 (78%), Gaps = 1/367 (0%)

>emb|CAD15355.1| (AL646065) PUTATIVE TRANSPORT/EFFLUX TRANSMEMBRANE PROTEIN
           [Ralstonia solanacearum]
          Length = 402

 Score =  223 bits (568), Expect = 1e-57
 Identities = 132/360 (36%), Positives = 198/360 (55%), Gaps = 11/360 (3%)
Structural Features:
COG0845, AcrA, Membrane-fusion protein 
[Cell envelope biogenesis, outer membrane]
CD-Length = 372 residues,  94.6% aligned
Score =  118 bits (296), Expect = 2e-27
Identities = 110/354 (31%), Positives = 163/354 (46%), Gaps = 10/354 (2%)
Genomic Context:
Comment:
ReferenceID:3737
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:20884
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:31868
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:1867_cdd.html
URL:
Homologs By Global Alignment
Gene ID:1867

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
3302 PA3677_tr translation of PA3677 367 99.45 99.45 0 1822.0
102496 gb|AAG07065.1|AE004787_5 (AE004787) probable RND efflux membrane fusion protein precursor [Pseudomonas aeruginosa PAO1] 367 99.45 99.45 0 1822.0
102497 gb|AAN67137.1|AE016342_9 (AE016779) RND membrane fusion protein [Pseudomonas putida KT2440] 367 69.20 78.74 1 1253.0
GC ORFID: 44869How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA3677Glimmer Score:
Start: 3516292Stop: 3515189
Length: 1104
Start Codon: ATGTruncated Start:
Stop Codon: TAGTruncated Stop:
Homolog: t_PA3677 translation of PA3677Homolog Bit Score 706.0
Other Homologs: t_PA3677 (ORF: GLIMMER)
GC ORF Sequence
ATGTACCGCCATATCCCGCTCGTCGCCCTGTCCCTGCTTTCCTCCCTGTTCCTCGCCGCCTGCGGCAACGGC
ACGCCGCCGCCAGCCGCGGCGCGTCCGGCGATCGTCGTCCAGCCCCAGCCGGCGGGGGAGGTGAGCCAGGCC
TTTCCCGGCGAGATCCGCGCCCGCCACGAGCCTGAGCTGGCCTTCCGCATCGGCGGCAAGGTCATCCGCCGG
CTGGTGGAAGTCGGCGAGCGGGTGAAGAAGGACCAGCCCCTGGCCGAACTCGATCCCCAGGACGTGCGCCTG
CAACTGGAGGCGGCGCGGGCCCAGGTCAGTGCCGCCGAGGCCAACCTGCAGACCGTGCGCGCCGAGTACCGG
CGCTACCGCACCTTGCTCGACCGCAACCTGGTCAGCCATTCCCAGTTCGAGAACATCCAGAACAGCTACCGC
GCCGGCGAGGCGCGGTTGAAGCAGATCCGCGCCGAATTCAACGTCGCCGACAACCAGGCCGGCTACGCCGTG
CTGCGCTCGCCCCAGGATGGCGTGATCGCCAGCCGGCGCGTCGAGGTGGGCCAGGTGGTGGCGGCCGGGCAG
ACGGTCTTCAGCCTGGCCGCCGACGGCGAGCGCGAGGTGCTGATCGGCCTGCCGGAACACAGCTTCGAACGT
TTCCGCATCGGCCAGCCGGTGTCGGTCGAACTCTGGTCGCAACGCGACAGACGCTTCGCCGGGCATATCCGC
GAGCTCTCGCCCGCGGCCGATCCGCAATCGCGTACCTTCGCCGCCCGGGTGGCCTTCGACGACCGCGCGACT
CCGGCCGAACTGGGCCAGAGCGCCCGGGTCTACGTCGCCGCCGCCGAGGCGGTGCCGTTATCGGTTCCCTTG
TCGGCGCTGACCGCAGAGGCCGGCCAGGCGTTCGTCTGGGTGGTCGAACCGGGCAGCTCGACCCTGCGCCGG
CAGCCGGTGCGCACCGGTCCCTATGCCGAGGACCGGGTGCCGGTGCTCGAAGGCCTGAAGGCTGGCGACTGG
GTAGTGGCCACCGGGGTCCAGGTGCTTCGCGAAGGGCAGCAGGTGCGTCCGATCGACCGGGCCAACCGCACG
GTGAAACTGGCGGCCAAGGAGTAG