ViewGene

Locus Name:
GeneID:
Location:

GeneID:1866
TrivialName: PA14_17640
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_17640
PAO1 Ortholog Locus:PA3607
Sequence Length:1092
Protein Length:363
Start: 1516930
Stop: 1515839
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06995.1|AE004781_3 (AE004781) polyamine transport protein PotA [Pseudomonas aeruginosa PAO1]
Identities = 361/363 (99%), Positives = 362/363 (99%)
Sequence:
GTGACGCCCCCCTTGCTCGAGATCCGCAACGTGACCCGCCGCTTCGGCGACTTCACCGCCGTCGACAATGTC
AGCCTGACGATCAACACCGGCGAATTCTTCACCCTCCTCGGCCCTTCCGGGTGCGGCAAGACCACCCTCCTG
CGCATGCTCGCCGGCTTCGACCAGCCGGACAGCGGCGAGATCCGCCTCAACGGCCAGGACCTCGCCGGCGTC
GAGCCGGAGAAGCGCCCGGTGCATACGGTGTTCCAGAGCTACGCGCTGTTCCCGCACATGAGCGTGGCGCAG
AACATCGCCTTCCCGCTGAAGATGGCCGGAGTGGCGAAGAGCGAGATCGACGCCCGCGTCGAACAAGCCCTG
AAGGACGTGCGCCTGGCGGACAAGGGCGGGCGCATGCCGACACAGCTTTCCGGCGGCCAGCGCCAGCGCGTG
GCGATCGCCCGCGCGCTGGTCAACCGGCCGCGCCTGCTGCTGCTCGACGAACCGCTGTCGGCGCTGGACGCC
AAGCTGCGCGAAGAAATGCAGATCGAACTGATCAACCTGCAGAAGGACGTCGGCATCACCTTCGTCTATGTC
ACCCACGATCAGGGCGAAGCCCTGGCGCTGTCGCACCGCATCGCGGTGATGAACCAGGGCCGGGTGGAGCAG
CTGGACGCCCCGGAAACCATCTACAGCTTCCCGCGCAGTCGTTTCGTCGCCGACTTCATCGGCCAGTGCAAC
CTGCTCGACGCCACAGTCGAGGCGGTCGACGGCGAACGCGTGCGCATCGATCTCCGGGGCCTGGGCGAGGTC
CAGGCGCTGAAATCCTTCGACGCCCAGCCCGGCGAGGCCTGCGTGCTGACCCTGCGGCCGGAGAAGATCCGC
CTGGCGCAGAGCGTCACCGCCGACAGCAACGAGGTGCACTTCCGCGGCCGCGTCGCCGAACTGCTCTACCTG
GGCGACGTGACCCTGTACATCGTCGAGCTGGAGAACGGCGAGCGCCTGGAAACCCTGCTGCCCAACGCCACG
CCCGGCCGGACCAAGTTCTTCGAGGTGGGCGACGCGGTGGAAGCCGCCTGGCGCTTCGATGCCGGCCACCTG
GTCAGGGCCTGA
Translation:
MTPPLLEIRNVTRRFGDFTAVDNVSLTINTGEFFTLLGPSGCGKTTLLRMLAGFDQPDSGEIRLNGQDLAGV
EPEKRPVHTVFQSYALFPHMSVAQNIAFPLKMAGVAKSEIDARVEQALKDVRLADKGGRMPTQLSGGQRQRV
AIARALVNRPRLLLLDEPLSALDAKLREEMQIELINLQKDVGITFVYVTHDQGEALALSHRIAVMNQGRVEQ
LDAPETIYSFPRSRFVADFIGQCNLLDATVEAVDGERVRIDLRGLGEVQALKSFDAQPGEACVLTLRPEKIR
LAQSVTADSNEVHFRGRVAELLYLGDVTLYIVELENGERLETLLPNATPGRTKFFEVGDAVEAAWRFDAGHL
VRA*
AnnotationID:1875GeneID:1866
AnnotatorUID: diggins
Modification Date/Time: 2005-04-20 13:01:01
Gene Name:potA
Confidence Code:2
GeneProduct:polyamine transport protein PotA
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3842,COG3839,COG1118,COG1125
Secondary Functional Category(ies):
EC Number:3.6.3.31
Status:ACTIVE
Pathway:
Homology:
>emb|CAD85781.1| (BX321862) potA; putative spermidine/putrescine transport system
           ATP-binding protein [Nitrosomonas europaea ATCC 19718]
          Length = 361

 Score =  416 bits (1068), Expect = e-115
 Identities = 215/358 (60%), Positives = 271/358 (75%), Gaps = 2/358 (0%)

>gb|AAL41627.1| (AE009029) ABC transporter, nucleotide binding/ATPase protein
           [Agrobacterium tumefaciens str. C58 (U. Washington)]
          Length = 385

 Score =  331 bits (848), Expect = 5e-90
 Identities = 177/360 (49%), Positives = 242/360 (67%), Gaps = 6/360 (1%)
Structural Features:
COG3842, PotA, ABC-type spermidine/putrescine transport systems, 
ATPase components 
[Amino acid transport and metabolism]
CD-Length = 352 residues, 100.0% aligned
Score =  407 bits (1047), Expect = 3e-114
Identities = 192/364 (52%), Positives = 240/364 (65%), Gaps = 13/364 (3%)

COG3839, MalK, ABC-type sugar transport systems, ATPase components 
[Carbohydrate transport and metabolism]
CD-Length = 338 residues,  98.8% aligned
Score =  339 bits (870), Expect = 8e-94
Identities = 152/354 (42%), Positives = 206/354 (58%), Gaps = 22/354 (6%)

COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component 
[Inorganic ion transport and metabolism] 
CD-Length = 345 residues,  94.5% aligned
Score =  270 bits (692), Expect = 3e-73
Identities = 148/341 (43%), Positives = 199/341 (58%), Gaps = 20/341 (5%)

COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, 
ATPase components 
[Amino acid transport and metabolism]
CD-Length = 309 residues,  85.4% aligned
Score =  261 bits (668), Expect = 2e-70
Identities = 115/264 (43%), Positives = 165/264 (62%), Gaps = 5/264 (1%)
Genomic Context:
Comment:
ReferenceID:14449
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:20882
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:31934
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:1866_cdd.html
URL:
ReferenceID:34164
Author/Investigator(s): Kashiwagi K, Miyamoto S, Nukui E, Kobayashi H, Igarashi K.
Title: Functions of potA and potD proteins in spermidine-preferential uptake system in Escherichia coli.
PubMed: 8366082
MedLine:
Source:
J Biol Chem. 1993 Sep 15;268(26):19358-63.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=8366082
Homologs By Global Alignment
Gene ID:1866

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
3286 PA3607_tr translation of PA3607 363 99.44 99.72 0 1823.0
101762 gb|AAG06995.1|AE004781_3 (AE004781) polyamine transport protein PotA [Pseudomonas aeruginosa PAO1] 363 99.17 99.72 0 1820.0
101763 gb|AAQ61763.2| (AE016924) polyamine transport protein PotA [Chromobacterium violaceum ATCC 12472] 363 65.01 80.99 2 1220.0
101764 emb|CAD85781.1| (BX321862) potA; putative spermidine/putrescine transport system ATP-binding protein [Nitrosomonas europaea ATCC 19718] 369 58.80 74.25 14 1067.0
101778 dbj|BAB50514.1| (AP003002) spermidine/putrescine ABC transporter, ATP-binding protein [Mesorhizobium loti] 372 48.65 63.44 24 809.0
GC ORFID: 44868How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA3607Glimmer Score:
Start: 3437007Stop: 3438098
Length: 1092
Start Codon: GTGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA3607 translation of PA3607Homolog Bit Score 706.0
Other Homologs: t_PA0603 (ORF: BLASTX 304.0), psyr_15may02_Scaffold13_revised_gene2134 (ORF: BLASTX 293.0), t_PA0326 (ORF: BLASTX 292.0), t_PA0206 (ORF: BLASTX 273.0), psyr_15may02_Scaffold7_revised_gene6993 (ORF: BLASTX 269.0), psyr_15may02_Scaffold2_revised_gene3068 (ORF: BLASTX 236.0), t_PA2341 (ORF: BLASTX 232.0), t_PA0280 (ORF: BLASTX 227.0), psyr_15may02_Scaffold3_revised_gene4722 (ORF: BLASTX 224.0), psyr_15may02_Scaffold4_revised_gene5887 (ORF: BLASTX 218.0), t_PA3891 (ORF: BLASTX 168.0), t_PA3607 (ORF: GLIMMER)
GC ORF Sequence
GTGACGCCCCCCTTGCTCGAGATCCGCAACGTGACCCGCCGCTTCGGCGACTTCACCGCCGTCGACAATGTC
AGCCTGACGATCAACACCGGCGAATTCTTCACCCTCCTCGGCCCTTCCGGGTGCGGCAAGACCACCCTCCTG
CGCATGCTCGCCGGCTTCGACCAGCCGGACAGCGGCGAGATCCGCCTCAACGGCCAGGACCTCGCCGGCGTC
GAGCCGGAGAAGCGCCCGGTGCATACGGTGTTCCAGAGCTACGCGCTGTTCCCGCACATGAGCGTGGCGCAG
AACATCGCCTTCCCGCTGAAGATGGCCGGAGTGGCGAAGAGCGAGATCGACGCCCGCGTCGAACAAGCCCTG
AAGGACGTGCGCCTGGCGGACAAGGGCGGGCGCATGCCGACACAGCTTTCCGGCGGCCAGCGCCAGCGCGTG
GCGATCGCCCGCGCGCTGGTCAACCGGCCGCGCCTGCTGCTGCTCGACGAACCGCTGTCGGCGCTGGACGCC
AAGCTGCGCGAAGAAATGCAGATCGAACTGATCAACCTGCAGAAGGACGTCGGCATCACCTTCGTCTATGTC
ACCCACGATCAGGGCGAAGCCCTGGCGCTGTCGCACCGCATCGCGGTGATGAACCAGGGCCGGGTGGAGCAG
CTGGACGCCCCGGAAACCATCTACAGCTTCCCGCGCAGTCGTTTCGTCGCCGACTTCATCGGCCAGTGCAAC
CTGCTCGACGCCACAGTCGAGGCGGTCGACGGCGAACGCGTGCGCATCGATCTCCGGGGCCTGGGCGAGGTC
CAGGCGCTGAAATCCTTCGACGCCCAGCCCGGCGAGGCCTGCGTGCTGACCCTGCGGCCGGAGAAGATCCGC
CTGGCGCAGAGCGTCACCGCCGACAGCAACGAGGTGCACTTCCGCGGCCGCGTCGCCGAACTGCTCTACCTG
GGCGACGTGACCCTGTACATCGTCGAGCTGGAGAACGGCGAGCGCCTGGAAACCCTGCTGCCCAACGCCACG
CCCGGCCGGACCAAGTTCTTCGAGGTGGGCGACGCGGTGGAAGCCGCCTGGCGCTTCGATGCCGGCCACCTG
GTCAGGGCCTGA