ViewGene

Locus Name:
GeneID:
Location:

GeneID: 1862

TrivialName: PA14_04560

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_04560

PAO1 Ortholog Locus: PA0348

Sequence Length: 1095

Protein Length: 364

Start: 405267

Stop: 406361

Strand: +

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG03737.1|AE004472_9 (AE004472) hypothetical protein [Pseudomonas aeruginosa PAO1] Identities = 362/364 (99%), Positives = 363/364 (99%)

Sequence:

ATGGCTTCCGCGCAACCTGCCTCCGCGTTTCCCTGCCTGTCGTTGCAACTGGCCTGCCTGTTGCTGGGCGCC
TGGCTGGCCTTCGATGCCCACGGTGGCGGCCAGGCCGTGGCGCCGCCGGCCCGTGTCGAAGCGCGTGTGCCG
ACGGCCGCTACCGATGACTGGGGGCGCCAGCCGGACAGCCTGATGAGCGCCGTGCCGCCGCGTACGCTGGAG
GCGAGTGTCGGCGCCCGCGGCTCGGGATCGGCGAGTTCGCGACTGTGGATCGCCGATACCGACTTCCGCCTG
CACGACGACATCGGTTTCTTCATCCAGCGCATGCTGATCCGCATGGAACCGACTCGTCCCGGCGCGCCCTTG
TCGCTCGACGATCCGACGGCGATGGTGGCGCGGATCCAGGCCGGTGAGATATTCGTCAGCGACGCCACCCTG
GCGACCCTGCTCAACCAGGACCTCGCCGCGTCCCGCGCGGCCGTGCGCAACCTCAGGATGAGCACCCGCAAG
GACGGCCAGGAAGTGCGTGGCGAGTTGTTGCGCAAGGGGCGCTGGCGGCCGCTGCGGATGCTCACCGAGATC
GAGCTGAGCGGTCCGCTGGAGGTGACCCTGGTACCCCGGCGGATCTTCGTCGACGGGGTCGAGGTCACTTCG
TCGCTGGCGGCGGCCTCGATCGAGATGTCCGAGGTGCTGAAGCTGAAGACCCGGCACATGGAGCTGGTCGGC
AACCGCATCCGCGTCGACCTCGACGGTTTGTTCCCGCCGCCGCGCCTGGACTTCCGCGTCAGTCGCCTGGCC
CTGGCCGACGGCGGCATGCAACTCGCCCTCGGCGACTCCCTGGCCGACCTGCAATGGCCGGCATTACGGGCG
CCGGACAGCTACATGTTCATCGAGGGCGGCGATATCAAGATGGCGCGCACCGTGCTGGTCAAGGCCTACGCC
CTGTTCACCAGCCTCAGCCCGGGGCAGCCGCTGCTGTTCAATCTCTACGACTACCGGCGGCAACTGCAGAAC
GGTGTGATCCGCCTGCGCGAGGACGGCATGGTGCAGATCGCCGTGTCGCCGGTGAAGGCGCCGGCGCCGCTG
GAGGCACGGCTGTGA

Translation:

MASAQPASAFPCLSLQLACLLLGAWLAFDAHGGGQAVAPPARVEARVPTAATDDWGRQPDSLMSAVPPRTLE
ASVGARGSGSASSRLWIADTDFRLHDDIGFFIQRMLIRMEPTRPGAPLSLDDPTAMVARIQAGEIFVSDATL
ATLLNQDLAASRAAVRNLRMSTRKDGQEVRGELLRKGRWRPLRMLTEIELSGPLEVTLVPRRIFVDGVEVTS
SLAAASIEMSEVLKLKTRHMELVGNRIRVDLDGLFPPPRLDFRVSRLALADGGMQLALGDSLADLQWPALRA
PDSYMFIEGGDIKMARTVLVKAYALFTSLSPGQPLLFNLYDYRRQLQNGVIRLREDGMVQIAVSPVKAPAPL
EARL*

AnnotationID:1871 GeneID:1862

AnnotatorUID: diggins

Modification Date/Time: 2005-03-24 18:06:19

Gene Name:

Confidence Code: 4

GeneProduct: conserved hypothetical protein

Cell Localization: ()

Synonyms: PA0348

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

Genomic Context:

Comment:

ReferenceID:3727

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:20874

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:33690

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 1862_cdd.html

URL:

Homologs By Global Alignment

Gene ID:1862

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

3265 PA0348_tr translation of PA0348 364 99.45 99.72 0 1825.0

101087 gb|AAG03737.1|AE004472_9 (AE004472) hypothetical protein PA0348 [Pseudomonas aeruginosa PAO1] 364 99.45 99.72 0 1825.0

GC ORFID: `44864`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA0348`	Glimmer Score:
Start: `6206609`	Stop: `6207703`
Length: `1095`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_PA0348 translation of PA0348`	Homolog Bit Score `707.0`
Other Homologs: `t_PA0348 (ORF: GLIMMER)`
GC ORF Sequence
ATGGCTTCCGCGCAACCTGCCTCCGCGTTTCCCTGCCTGTCGTTGCAACTGGCCTGCCTGTTGCTGGGCGCC TGGCTGGCCTTCGATGCCCACGGTGGCGGCCAGGCCGTGGCGCCGCCGGCCCGTGTCGAAGCGCGTGTGCCG ACGGCCGCTACCGATGACTGGGGGCGCCAGCCGGACAGCCTGATGAGCGCCGTGCCGCCGCGTACGCTGGAG GCGAGTGTCGGCGCCCGCGGCTCGGGATCGGCGAGTTCGCGACTGTGGATCGCCGATACCGACTTCCGCCTG CACGACGACATCGGTTTCTTCATCCAGCGCATGCTGATCCGCATGGAACCGACTCGTCCCGGCGCGCCCTTG TCGCTCGACGATCCGACGGCGATGGTGGCGCGGATCCAGGCCGGTGAGATATTCGTCAGCGACGCCACCCTG GCGACCCTGCTCAACCAGGACCTCGCCGCGTCCCGCGCGGCCGTGCGCAACCTCAGGATGAGCACCCGCAAG GACGGCCAGGAAGTGCGTGGCGAGTTGTTGCGCAAGGGGCGCTGGCGGCCGCTGCGGATGCTCACCGAGATC GAGCTGAGCGGTCCGCTGGAGGTGACCCTGGTACCCCGGCGGATCTTCGTCGACGGGGTCGAGGTCACTTCG TCGCTGGCGGCGGCCTCGATCGAGATGTCCGAGGTGCTGAAGCTGAAGACCCGGCACATGGAGCTGGTCGGC AACCGCATCCGCGTCGACCTCGACGGTTTGTTCCCGCCGCCGCGCCTGGACTTCCGCGTCAGTCGCCTGGCC CTGGCCGACGGCGGCATGCAACTCGCCCTCGGCGACTCCCTGGCCGACCTGCAATGGCCGGCATTACGGGCG CCGGACAGCTACATGTTCATCGAGGGCGGCGATATCAAGATGGCGCGCACCGTGCTGGTCAAGGCCTACGCC CTGTTCACCAGCCTCAGCCCGGGGCAGCCGCTGCTGTTCAATCTCTACGACTACCGGCGGCAACTGCAGAAC GGTGTGATCCGCCTGCGCGAGGACGGCATGGTGCAGATCGCCGTGTCGCCGGTGAAGGCGCCGGCGCCGCTG GAGGCACGGCTGTGA