ViewGene
Locus Name:
GeneID:
Location:

GeneID:1861
TrivialName: PA14_71440
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_71440
PAO1 Ortholog Locus:PA5413
Sequence Length:1041
Protein Length:346
Start: 6366007
Stop: 6364967
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08798.1|AE004953_12 (AE004953) low specificity l-threonine aldolase [Pseudomonas aeruginosa PAO1]
Identities = 345/346 (99%), Positives = 346/346 (100%)
Sequence:
ATGACCGATAACACCCAACAGTTCGCCAGCGACAACTATTCCGGTATCTGCCCCGAAGCCTGGGCGGCGATG
GCCGAAGCCAACCGCGGCCACGAGCGCGCCTATGGCGACGACCAGTGGACCGCGCGCGCTTCGGACTACTTC
CGCCAGTTGTTCGAGACCGATTGCGAAGTGTTCTTCGCCTTCAACGGCACCGCCGCCAACTCCCTGGCCCTG
GCCGCGCTGTGCCAGAGCTACCACAGCGTGATCTGCTCGGAGACCGCCCACGTCGAGACCGACGAGTGCGGC
GCGCCGGAGTTCTTCTCCAACGGCTCCAAGCTGCTGCTGGCGCAGACCGAGGTCGGCAAGCTGACCCCGGCG
TCGATCCGCGACATCGCTCTCAAGCGCCAGGATATCCACTATCCGAAGCCGCGCGTGGTGACTCTCACCCAG
GCCACCGAGGTCGGTACGGTGTACCGCCCGGACGAGTTGAAGGCGATCAGCGCCACCTGCAAGGAACTCGGC
CTGCACCTGCACATGGACGGCGCGCGCTTCTCCAACGCCTGCGCCTTCCTCGGCTGCTCGCCGGCGGAGCTG
AGCTGGAAGGCCGGGGTCGACGTGCTCTGCTTCGGCGGCACCAAGAACGGCATGGCGGTGGGCGAGGCGATC
CTGTTCTTCAACCGCGACCTGGCCGAGGACTTCGACTACCGCTGCAAGCAGGCCGGCCAACTGGCCTCGAAG
ATGCGCTTCCTCGCCGCGCCCTGGGTCGGCGTACTGCAGGACGATGCCTGGCTGCGCTACGCCGATCACGCC
AACCGCTGCGCGCGGCTGTTGGCCGAACTGGTGGCCGACGTTCCCGGCGTCAGCCTGATGTTCCCGGTAGAA
GCCAACGGCGTCTTCCTGCAGCTTTCCGAGCCGGCGATCGAAGCCTTGCGCGCGCGCGGCTGGCGCTTCTAC
ACCTTCATCGGTGAAGGTGGCGCGCGTTTCATGTGTTCCTGGGATACCGATATCGAGCGGGTCCGCGAACTG
GCgcgggaCATCcGcCTGGTGATGGGCGCCTGA
Translation:
MTDNTQQFASDNYSGICPEAWAAMAEANRGHERAYGDDQWTARASDYFRQLFETDCEVFFAFNGTAANSLAL
AALCQSYHSVICSETAHVETDECGAPEFFSNGSKLLLAQTEVGKLTPASIRDIALKRQDIHYPKPRVVTLTQ
ATEVGTVYRPDELKAISATCKELGLHLHMDGARFSNACAFLGCSPAELSWKAGVDVLCFGGTKNGMAVGEAI
LFFNRDLAEDFDYRCKQAGQLASKMRFLAAPWVGVLQDDAWLRYADHANRCARLLAELVADVPGVSLMFPVE
ANGVFLQLSEPAIEALRARGWRFYTFIGEGGARFMCSWDTDIERVRELARDIRLVMGA*
AnnotationID:1870GeneID:1861
AnnotatorUID: diggins
Modification Date/Time: 2005-03-17 11:11:45
Gene Name:ltaA
Confidence Code:2
GeneProduct:low specificity L-threonine aldolase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(2) Amino acid biosynthesis and metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2008
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>dbj|BAA24794.1| (AB001577) low specificity L-threonine aldolase [Pseudomonas sp.]
          Length = 346

 Score =  633 bits (1633), Expect = 0.0
 Identities = 300/346 (86%), Positives = 328/346 (94%)

>gb|AAN65952.1|AE016223_6 (AE016775) low-specificity L-threonine aldolase [Pseudomonas putida
           KT2440]
          Length = 346

 Score =  624 bits (1608), Expect = e-178
 Identities = 296/345 (85%), Positives = 321/345 (93%)

>gb|AAO53954.1| (AE016857) threonine aldolase, low-specificity [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 346

 Score =  617 bits (1591), Expect = e-176
 Identities = 295/344 (85%), Positives = 323/344 (93%)






 
Structural Features:
COG2008, GLY1, Threonine aldolase [Amino acid transport and metabolism]
CD-Length = 342 residues, 100.0% aligned
Score =  416 bits (1070), Expect = 3e-117
Identities = 161/345 (46%), Positives = 188/345 (54%), Gaps = 7/345 (2%)








   
Genomic Context:






   
Comment:


















    ReferenceID:3725




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20872




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34693




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1861_cdd.html


    		




 
URL:

















    ReferenceID:35654




  
Author/Investigator(s):
        Liu JQ, Ito S, Dairi T, Itoh N, Kataoka M, Shimizu S, Yamada H.





  
Title:
        Gene cloning, nucleotide sequencing, and purification and characterization of the low-specificity L-threonine aldolase from Pseudomonas sp. strain NCIMB 10558.




  
PubMed:
        9464392


MedLine:
        




    
Source:
Appl Environ Microbiol. 1998 Feb;64(2):549-54.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=9464392

















    ReferenceID:35655




  
Author/Investigator(s):
        Liu JQ, Dairi T, Kataoka M, Shimizu S, Yamada H.





  
Title:
        L-allo-threonine aldolase from Aeromonas jandaei DK-39: gene cloning, nucleotide sequencing, and identification of the pyridoxal 5'-phosphate-binding lysine residue by site-directed mutagenesis.




  
PubMed:
        9171400


MedLine:
        




    
Source:
J Bacteriol. 1997 Jun;179(11):3555-60.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=9171400









           
Homologs By Global Alignment 

           

       



     
Gene ID:1861
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3264
                           PA5413_tr
                           translation of PA5413
                           346
                           99.71
                           99.99
                           0
                           1825.0
     

     
     
101066
                           gb|AAG08798.1|AE004953_12
                           (AE004953) low specificity l-threonine aldolase [Pseudomonas aeruginosa PAO1]
                           346
                           99.71
                           99.99
                           0
                           1825.0
     

     
     
101067
                           dbj|BAA24794.1|
                           (AB001577) low specificity L-threonine aldolase [Pseudomonas sp.]
                           346
                           86.70
                           94.79
                           0
                           1633.0
     

     
     
101068
                           gb|AAN65952.1|AE016223_6
                           (AE016775) low-specificity L-threonine aldolase [Pseudomonas putida KT2440]
                           346
                           85.54
                           92.77
                           0
                           1608.0
     

     
     
101069
                           gb|AAO53954.1|
                           (AE016857) threonine aldolase, low-specificity [Pseudomonas syringae pv. tomato str. DC3000]
                           346
                           85.26
                           93.35
                           0
                           1589.0
     

     






      

          
GC ORFID: 44863How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5413Glimmer Score: 

          
Start: 5629696Stop: 5628656

          
Length: 1041


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5413 translation of PA5413Homolog Bit Score 707.0

          
Other Homologs:  psyr_15may02_Scaffold6_revised_gene6829 (ORF: BLASTX 624.0), t_PA5413 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACCGATAACACCCAACAGTTCGCCAGCGACAACTATTCCGGTATCTGCCCCGAAGCCTGGGCGGCGATG 
GCCGAAGCCAACCGCGGCCACGAGCGCGCCTATGGCGACGACCAGTGGACCGCGCGCGCTTCGGACTACTTC 
CGCCAGTTGTTCGAGACCGATTGCGAAGTGTTCTTCGCCTTCAACGGCACCGCCGCCAACTCCCTGGCCCTG 
GCCGCGCTGTGCCAGAGCTACCACAGCGTGATCTGCTCGGAGACCGCCCACGTCGAGACCGACGAGTGCGGC 
GCGCCGGAGTTCTTCTCCAACGGCTCCAAGCTGCTGCTGGCGCAGACCGAGGTCGGCAAGCTGACCCCGGCG 
TCGATCCGCGACATCGCTCTCAAGCGCCAGGATATCCACTATCCGAAGCCGCGCGTGGTGACTCTCACCCAG 
GCCACCGAGGTCGGTACGGTGTACCGCCCGGACGAGTTGAAGGCGATCAGCGCCACCTGCAAGGAACTCGGC 
CTGCACCTGCACATGGACGGCGCGCGCTTCTCCAACGCCTGCGCCTTCCTCGGCTGCTCGCCGGCGGAGCTG 
AGCTGGAAGGCCGGGGTCGACGTGCTCTGCTTCGGCGGCACCAAGAACGGCATGGCGGTGGGCGAGGCGATC 
CTGTTCTTCAACCGCGACCTGGCCGAGGACTTCGACTACCGCTGCAAGCAGGCCGGCCAACTGGCCTCGAAG 
ATGCGCTTCCTCGCCGCGCCCTGGGTCGGCGTACTGCAGGACGATGCCTGGCTGCGCTACGCCGATCACGCC 
AACCGCTGCGCGCGGCTGTTGGCCGAACTGGTGGCCGACGTTCCCGGCGTCAGCCTGATGTTCCCGGTAGAA 
GCCAACGGCGTCTTCCTGCAGCTTTCCGAGCCGGCGATCGAAGCCTTGCGCGCGCGCGGCTGGCGCTTCTAC 
ACCTTCATCGGTGAAGGTGGCGCGCGTTTCATGTGTTCCTGGGATACCGATATCGAGCGGGTCCGCGAACTG 
GCgcgggaCATCcGcCTGGTGATGGGCGCCTGA