ViewGene
Locus Name:
GeneID:
Location:

GeneID:186
TrivialName: PA14_06160
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_06160
PAO1 Ortholog Locus:PA0470
Sequence Length:2394
Protein Length:797
Start: 545236
Stop: 542843
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03859.1|AE004484_11 (AE004484) probable hydroxamate-type ferrisiderophore receptor [Pseudomonas aeruginosa PAO1]
Identities = 772/802 (96%), Positives = 787/802 (98%), Gaps = 5/802 (0%)
Sequence:
ATGCCCCGCCCGACGTTCCGTCCCGGCCTGCTCGCCCTCGCCATCGCCCTCGCCGTTCCCGCACCGTTCCTC
CACGCCGCCCCGGCCGAACAGGCCAGCGTGCGCGACTACCGCATCGCCGCCGGGCCGCTGGCAGGCACCCTG
AACCGCATCGCGGCCCAGGCCGGCCTGGTCCTCACCCTGGACCCGGCGCTCGCCGAAGGACGCAGCGCCCAC
GCCGTACAAGGTCGCTTCGACGCGCCCGGCGCATTGCGCGAAGCGCTCAAGGGCAGCGGCCTGGAGCTGGTG
GAAAATGCCGGCGGCACCTACAGCCTGCGCAAGGTGCCGGAAGACACCCTGTCGTTGCAGGCGATGACGGTC
AGCGGCGCCGAGGAAGACCCACTGGGGCCGACCAGCGGCTACGTGGCCAAGCGCAGCATGACCGGGACCAAG
ACCGATACGCCGATCCTCGAGACCCCGCGCTCGATCTCGGTGGCGACCCGCCAGCAGATGACCGACCGCGCC
GTGCACAACCTCGACGACGCGGTGCGCTACATGCCCGGCGTCGTCGCCAGCAGCTTCGGCAGCGACACCCGC
TCCGACTGGTTGAAGGTGCGCGGCTTCAAGCCGACCCAGTTCCTCGACGGCCTGCCGATGGCGGTCGGCGTC
TACAACAACCCGAAGCTGGAAACCTGGAACCTGGAGCGTGTCGCCCTGTTGCGCGGCCCGGCCTCCTCGGTC
TACGGCCAGACCCCGCCCGGCGGCATGCTCGACATGGTCAGCCTGCGTCCGCAGAACGTCACCAGTCACGAG
GTGAAGGCCGAGGTCGGCAACTACAACCACAAGCAGGTCAGCTTCGACAGCACCGGCCCGCTCGACGACGAG
GGACGCTTTCTCTATCGCATCTCCGGCGTGGTGCGCGACAGCAACACCCAGGTCGACCATATCGACGACAAG
CGCTACAACATCGCCCCGAGCCTGACCTGGAACATCGACGACGACACCAGGCTGACCTTCCTCGGCCAGTTC
AACCGCGACGATACCGGCATCACCAGCCAGTTCCTGCCGCTGCGCGGAACCAAGTACGACGCGCCGTTCGGC
AAGGTTTCCCACCACAAGAACCTCGGCGACCCGGACTGGGAATACTACGACCGCACCTACTACTGGCTGGGC
TACGCCTTCGAGCGGCGGATCAACGATGTCTGGCAGTTCCGCCAGAACCTGCGTTACCTGCGCAACGACCTG
TCGTTCCAGGCGGTTACAGCGGGCACAGCTCATGCCGACGGCACACTGGAACGCAGCACCACCTCGGTGGAT
GAAGACGTCAGTCAGTTCGTAGTAGATAACAACTTCCAGGCCGACTTCGAAACAGGCGCCCTGCGCCACACC
CTGCTGCTAGGCCTGGATCACAACCGCACCGACAATCAATACACATCAATCTTTGGCAGCGCGCCGCCGAGC
AACGTCAACAACCCGATCTACGGCCAGCCGATCGTCAAACCGGATCGTTCGACGGCCTTCTACGACTACAAG
CAGAAGACCTACCAGACCGGCCTCTACGTCCAGGACCAGATCGCCCTCGACAACTGGCGCCTGACCCTCGGC
GGTCGCGAGGACTGGGTGCACACCGGGGCCACCTTCTACAACAAGGGCGACGCCACCAATACCAGCCGCGAC
AAGAAGTTCAGCGGCAACGCGGCGCTCAGCTACATCTTCGACAATGGCGTGGCGCCCTACATCTCCTATGCG
GAGTCGTTCCAGCCCACCACTGGCGCCGATATGAACAGCACCAGTTCGCTGAAGCCGACCGAAGGCAAGCAA
TGGGAAATCGGTGTGAAGTACCAGCCGGTGGGCTCCGACTCGCTGTTCACCGCCGCGGTCTATGACCTGCGC
CAGGAGAACGTCAGCGTGTCGCAGAACATAGGCGGCACGCCGGTCACTTCGCAGACGGGCGAAGTGAAGGTC
TCCGGGATAGAGCTGGAAGCCACCAGCAACGTCACCGACAACCTGAAGTTGATCGGCGCCTATAGCTACGCC
GACACCGAAGTGAAAAAAGGCCAGTACGCAGGCAACCGCCTGCAACAGGCGCCGCGCAACCAGGCCTCGCTA
TGGGCCGACTACACCTGGCACGAGGGTGCGCTGAACGGTTTCAGCGTGGGTGCCGGCGCCCGCTACGTAGGC
TCGACCTACGGCGACCAGGCCAACACCTACGACGGCTACGCCGGCTCGTACACCCTGTACGACGCCGCCGTG
CGCTACGACCTGGGCCAATTGAACGGCAGCCTGAAAGGCGTCAGCGTGGCGGTCAATGCCAACAATCTGTTC
AACAAGGACTACCTGGCGTCCTGCGACGGCTACTACTGCTACTACGGCGACCAGCGCAGCGTGGTGGGCAGC
GTCAGCTACAAGTGGTGA
Translation:
MPRPTFRPGLLALAIALAVPAPFLHAAPAEQASVRDYRIAAGPLAGTLNRIAAQAGLVLTLDPALAEGRSAH
AVQGRFDAPGALREALKGSGLELVENAGGTYSLRKVPEDTLSLQAMTVSGAEEDPLGPTSGYVAKRSMTGTK
TDTPILETPRSISVATRQQMTDRAVHNLDDAVRYMPGVVASSFGSDTRSDWLKVRGFKPTQFLDGLPMAVGV
YNNPKLETWNLERVALLRGPASSVYGQTPPGGMLDMVSLRPQNVTSHEVKAEVGNYNHKQVSFDSTGPLDDE
GRFLYRISGVVRDSNTQVDHIDDKRYNIAPSLTWNIDDDTRLTFLGQFNRDDTGITSQFLPLRGTKYDAPFG
KVSHHKNLGDPDWEYYDRTYYWLGYAFERRINDVWQFRQNLRYLRNDLSFQAVTAGTAHADGTLERSTTSVD
EDVSQFVVDNNFQADFETGALRHTLLLGLDHNRTDNQYTSIFGSAPPSNVNNPIYGQPIVKPDRSTAFYDYK
QKTYQTGLYVQDQIALDNWRLTLGGREDWVHTGATFYNKGDATNTSRDKKFSGNAALSYIFDNGVAPYISYA
ESFQPTTGADMNSTSSLKPTEGKQWEIGVKYQPVGSDSLFTAAVYDLRQENVSVSQNIGGTPVTSQTGEVKV
SGIELEATSNVTDNLKLIGAYSYADTEVKKGQYAGNRLQQAPRNQASLWADYTWHEGALNGFSVGAGARYVG
STYGDQANTYDGYAGSYTLYDAAVRYDLGQLNGSLKGVSVAVNANNLFNKDYLASCDGYYCYYGDQRSVVGS
VSYKW*
AnnotationID:196GeneID:186
AnnotatorUID: diggins
Modification Date/Time: 2005-03-27 08:08:08
Gene Name:
Confidence Code:3
GeneProduct:putative hydroxamate-type ferrisiderophore receptor
Cell Localization:()
Synonyms:fiuA
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:putative outer membrane ferrichrome-iron receptor
Functional Category Confidence Code:5
COGs:pfam00593,COG4773,COG1629,COG4774
Secondary Functional Category(ies):membrane proteins
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN65981.1|AE016227_2 (AE016775) outer membrane ferrichrome-iron receptor [Pseudomonas
           putida KT2440]
          Length = 810

 Score = 1115 bits (2884), Expect = 0.0
 Identities = 528/801 (65%), Positives = 646/801 (80%), Gaps = 10/801 (1%)








 
Structural Features:
pfam00593, TonB_dep_Rec, TonB dependent receptor.
CD-Length = 712 residues, 100.0% aligned
Score =  296 bits (757), Expect = 9e-81
Identities = 217/729 (29%), Positives = 309/729 (42%), Gaps = 98/729 (13%)

COG4773, FhuE, Outer membrane receptor for ferric coprogen 
and ferric-rhodotorulic acid 
[Inorganic ion transport and metabolism]
CD-Length = 719 residues,  93.7% aligned
Score =  249 bits (638), Expect = 8e-67
Identities = 169/700 (24%), Positives = 279/700 (39%), Gaps = 40/700 (5%)

COG4774, Fiu, Outer membrane receptor for monomeric catechols 
[Inorganic ion transport and metabolism]
CD-Length = 750 residues,  93.7% aligned
Score =  246 bits (630), Expect = 5e-66
Identities = 197/731 (26%), Positives = 331/731 (45%), Gaps = 72/731 (9%)

COG1629, CirA, Outer membrane receptor proteins, mostly Fe transport 
[Inorganic ion transport and metabolism]
CD-Length = 768 residues,  96.2% aligned
Score =  228 bits (581), Expect = 2e-60
Identities = 222/750 (29%), Positives = 329/750 (43%), Gaps = 75/750 (10%)






   
Genomic Context:






   
Comment:


















    ReferenceID:375




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17517




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33787




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:186_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:186
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
324
                           PA0470_tr
                           translation of PA0470
                           802
                           96.25
                           98.12
                           5
                           4070.0
     

     
     
21135
                           gb|AAG03859.1|AE004484_11
                           (AE004484) probable hydroxamate-type ferrisiderophore receptor [Pseudomonas aeruginosa PAO1]
                           802
                           96.25
                           98.12
                           5
                           4070.0
     

     
     
21136
                           gb|AAC06220.1|
                           (AF051691) hydroxamate-type ferrisiderophore receptor [Pseudomonas aeruginosa]
                           802
                           95.01
                           97.00
                           5
                           4004.0
     

     
     
21137
                           gb|AAN65981.1|AE016227_2
                           (AE016775) outer membrane ferrichrome-iron receptor [Pseudomonas putida KT2440]
                           812
                           65.64
                           80.17
                           17
                           2895.0
     

     
     
21140
                           emb|CAE38491.1|
                           (BX640432) putative ferric siderophore receptor [Bordetella parapertussis]
                           835
                           41.91
                           57.96
                           48
                           1571.0
     

     






      

          
GC ORFID: 43188How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0470Glimmer Score: 

          
Start: 6346578Stop: 6344185

          
Length: 2394


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0470 translation of PA0470Homolog Bit Score 1570.0

          
Other Homologs:  t_PA0470 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCCCGCCCGACGTTCCGTCCCGGCCTGCTCGCCCTCGCCATCGCCCTCGCCGTTCCCGCACCGTTCCTC 
CACGCCGCCCCGGCCGAACAGGCCAGCGTGCGCGACTACCGCATCGCCGCCGGGCCGCTGGCAGGCACCCTG 
AACCGCATCGCGGCCCAGGCCGGCCTGGTCCTCACCCTGGACCCGGCGCTCGCCGAAGGACGCAGCGCCCAC 
GCCGTACAAGGTCGCTTCGACGCGCCCGGCGCATTGCGCGAAGCGCTCAAGGGCAGCGGCCTGGAGCTGGTG 
GAAAATGCCGGCGGCACCTACAGCCTGCGCAAGGTGCCGGAAGACACCCTGTCGTTGCAGGCGATGACGGTC 
AGCGGCGCCGAGGAAGACCCACTGGGGCCGACCAGCGGCTACGTGGCCAAGCGCAGCATGACCGGGACCAAG 
ACCGATACGCCGATCCTCGAGACCCCGCGCTCGATCTCGGTGGCGACCCGCCAGCAGATGACCGACCGCGCC 
GTGCACAACCTCGACGACGCGGTGCGCTACATGCCCGGCGTCGTCGCCAGCAGCTTCGGCAGCGACACCCGC 
TCCGACTGGTTGAAGGTGCGCGGCTTCAAGCCGACCCAGTTCCTCGACGGCCTGCCGATGGCGGTCGGCGTC 
TACAACAACCCGAAGCTGGAAACCTGGAACCTGGAGCGTGTCGCCCTGTTGCGCGGCCCGGCCTCCTCGGTC 
TACGGCCAGACCCCGCCCGGCGGCATGCTCGACATGGTCAGCCTGCGTCCGCAGAACGTCACCAGTCACGAG 
GTGAAGGCCGAGGTCGGCAACTACAACCACAAGCAGGTCAGCTTCGACAGCACCGGCCCGCTCGACGACGAG 
GGACGCTTTCTCTATCGCATCTCCGGCGTGGTGCGCGACAGCAACACCCAGGTCGACCATATCGACGACAAG 
CGCTACAACATCGCCCCGAGCCTGACCTGGAACATCGACGACGACACCAGGCTGACCTTCCTCGGCCAGTTC 
AACCGCGACGATACCGGCATCACCAGCCAGTTCCTGCCGCTGCGCGGAACCAAGTACGACGCGCCGTTCGGC 
AAGGTTTCCCACCACAAGAACCTCGGCGACCCGGACTGGGAATACTACGACCGCACCTACTACTGGCTGGGC 
TACGCCTTCGAGCGGCGGATCAACGATGTCTGGCAGTTCCGCCAGAACCTGCGTTACCTGCGCAACGACCTG 
TCGTTCCAGGCGGTTACAGCGGGCACAGCTCATGCCGACGGCACACTGGAACGCAGCACCACCTCGGTGGAT 
GAAGACGTCAGTCAGTTCGTAGTAGATAACAACTTCCAGGCCGACTTCGAAACAGGCGCCCTGCGCCACACC 
CTGCTGCTAGGCCTGGATCACAACCGCACCGACAATCAATACACATCAATCTTTGGCAGCGCGCCGCCGAGC 
AACGTCAACAACCCGATCTACGGCCAGCCGATCGTCAAACCGGATCGTTCGACGGCCTTCTACGACTACAAG 
CAGAAGACCTACCAGACCGGCCTCTACGTCCAGGACCAGATCGCCCTCGACAACTGGCGCCTGACCCTCGGC 
GGTCGCGAGGACTGGGTGCACACCGGGGCCACCTTCTACAACAAGGGCGACGCCACCAATACCAGCCGCGAC 
AAGAAGTTCAGCGGCAACGCGGCGCTCAGCTACATCTTCGACAATGGCGTGGCGCCCTACATCTCCTATGCG 
GAGTCGTTCCAGCCCACCACTGGCGCCGATATGAACAGCACCAGTTCGCTGAAGCCGACCGAAGGCAAGCAA 
TGGGAAATCGGTGTGAAGTACCAGCCGGTGGGCTCCGACTCGCTGTTCACCGCCGCGGTCTATGACCTGCGC 
CAGGAGAACGTCAGCGTGTCGCAGAACATAGGCGGCACGCCGGTCACTTCGCAGACGGGCGAAGTGAAGGTC 
TCCGGGATAGAGCTGGAAGCCACCAGCAACGTCACCGACAACCTGAAGTTGATCGGCGCCTATAGCTACGCC 
GACACCGAAGTGAAAAAAGGCCAGTACGCAGGCAACCGCCTGCAACAGGCGCCGCGCAACCAGGCCTCGCTA 
TGGGCCGACTACACCTGGCACGAGGGTGCGCTGAACGGTTTCAGCGTGGGTGCCGGCGCCCGCTACGTAGGC 
TCGACCTACGGCGACCAGGCCAACACCTACGACGGCTACGCCGGCTCGTACACCCTGTACGACGCCGCCGTG 
CGCTACGACCTGGGCCAATTGAACGGCAGCCTGAAAGGCGTCAGCGTGGCGGTCAATGCCAACAATCTGTTC 
AACAAGGACTACCTGGCGTCCTGCGACGGCTACTACTGCTACTACGGCGACCAGCGCAGCGTGGTGGGCAGC 
GTCAGCTACAAGTGGTGA