ViewGene
Locus Name:
GeneID:
Location:

GeneID:1859
TrivialName: PA14_20840
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_20840
PAO1 Ortholog Locus:PA3342
Sequence Length:1017
Protein Length:338
Start: 1793623
Stop: 1794639
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06730.1|AE004756_8 (AE004756) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 336/338 (99%), Positives = 336/338 (99%)
Sequence:
ATGCAGCGCTTGATCCAGGCCAACGGCCAACCGCACTACGGCATCTTCCCGAGTGCCCCGCAGCACATCAAT
TACCGCGATTTCGACTTCCGTTCGCCGATGGGCCGGCGCGTGGGGGCCCTGGGCAAATGGCGACGCTTCCAT
CAGTTCCAGTACTTCGGCCTGATCAGCCCGGAGCTGATCGGCGGCTGCGCCCTGGCCCAGCTGAGCTTGCTT
GGCGTCGGCTTCGTCTACCTCTACCAGCCTTCCAGCGGACGCATGCTGGAGCGGCGCTTCAAGCTGCCGCTG
GGGTTCGGAACCCGGTTTTCCCAGACCCCGGACGACGGCGTCTGCGAACTGCGCCAGGGGCGCAACCTGCTG
CGCCTGGAGAACCGTACGGCTCCCCGGGAGAAACGCCTGCTGGTGGAACTCGACGATGGCACCCGCATCGAC
GCCTGCTTCAGCGAGGAGGCGCCGAGCTTCCAGCCGATGTGCCTGTGTACGCCGACCGCGGTGAACGGCTGG
GTCTATGCGCAGAAGGTGGCCGGCGTGCGCTGTCGCGGCGACGTGCGCAGCGCCCTCGGCGACCACGACCTG
CAGGCGCTGGACGCCTTCGCCCATCACGACTGGTCGGCGGGCTACATGCGCCCGGAAACCTTCTGGAACTGG
GCTTGCCTGTCCGGCGAGGCGGACGGCTTGCGGGTCGGCCTGAACCTGTCGTGCGGGGTCAACGAGACCAGC
TTCACCGAGAACTGCTACTGGCTGGACGGCGAACTGCTGAAGGTCGACAGCGTGCGCTTCGACTTCGACCGC
GACCAGCCGCTGCGGCCCTGGACCATCCGTTCATACGATGGCCAGGTAGAGCTGCGCTTCGAGGCCCACGGC
ATGCACCAGGAGCGGCTGAACCTCGGTCTGCTGGCGAGCAACTTCAAGCAGATATTCGGTTGTTTCAGCGGT
GTGCTGCGTCCGCGAGGTCGTGCCGAGGTGAGGATCGAGCGGCTCTGGGGCTTCGTCGAGGACCAGTACGCC
AAGTGGTAG
Translation:
MQRLIQANGQPHYGIFPSAPQHINYRDFDFRSPMGRRVGALGKWRRFHQFQYFGLISPELIGGCALAQLSLL
GVGFVYLYQPSSGRMLERRFKLPLGFGTRFSQTPDDGVCELRQGRNLLRLENRTAPREKRLLVELDDGTRID
ACFSEEAPSFQPMCLCTPTAVNGWVYAQKVAGVRCRGDVRSALGDHDLQALDAFAHHDWSAGYMRPETFWNW
ACLSGEADGLRVGLNLSCGVNETSFTENCYWLDGELLKVDSVRFDFDRDQPLRPWTIRSYDGQVELRFEAHG
MHQERLNLGLLASNFKQIFGCFSGVLRPRGRAEVRIERLWGFVEDQYAKW*
AnnotationID:1868GeneID:1859
AnnotatorUID: diggins
Modification Date/Time: 2005-04-15 10:10:19
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA3342
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:3721




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20868




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1859
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3262
                           PA3342_tr
                           translation of PA3342
                           338
                           99.40
                           99.40
                           0
                           1826.0
     

     
     
101056
                           gb|AAG06730.1|AE004756_8
                           (AE004756) hypothetical protein PA3342 [Pseudomonas aeruginosa PAO1]
                           338
                           99.40
                           99.40
                           0
                           1826.0
     

     






      

          
GC ORFID: 44861How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3342Glimmer Score: 

          
Start: 3160309Stop: 3159293

          
Length: 1017


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA3342 translation of PA3342Homolog Bit Score 707.0

          
Other Homologs:  t_PA3342 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCAGCGCTTGATCCAGGCCAACGGCCAACCGCACTACGGCATCTTCCCGAGTGCCCCGCAGCACATCAAT 
TACCGCGATTTCGACTTCCGTTCGCCGATGGGCCGGCGCGTGGGGGCCCTGGGCAAATGGCGACGCTTCCAT 
CAGTTCCAGTACTTCGGCCTGATCAGCCCGGAGCTGATCGGCGGCTGCGCCCTGGCCCAGCTGAGCTTGCTT 
GGCGTCGGCTTCGTCTACCTCTACCAGCCTTCCAGCGGACGCATGCTGGAGCGGCGCTTCAAGCTGCCGCTG 
GGGTTCGGAACCCGGTTTTCCCAGACCCCGGACGACGGCGTCTGCGAACTGCGCCAGGGGCGCAACCTGCTG 
CGCCTGGAGAACCGTACGGCTCCCCGGGAGAAACGCCTGCTGGTGGAACTCGACGATGGCACCCGCATCGAC 
GCCTGCTTCAGCGAGGAGGCGCCGAGCTTCCAGCCGATGTGCCTGTGTACGCCGACCGCGGTGAACGGCTGG 
GTCTATGCGCAGAAGGTGGCCGGCGTGCGCTGTCGCGGCGACGTGCGCAGCGCCCTCGGCGACCACGACCTG 
CAGGCGCTGGACGCCTTCGCCCATCACGACTGGTCGGCGGGCTACATGCGCCCGGAAACCTTCTGGAACTGG 
GCTTGCCTGTCCGGCGAGGCGGACGGCTTGCGGGTCGGCCTGAACCTGTCGTGCGGGGTCAACGAGACCAGC 
TTCACCGAGAACTGCTACTGGCTGGACGGCGAACTGCTGAAGGTCGACAGCGTGCGCTTCGACTTCGACCGC 
GACCAGCCGCTGCGGCCCTGGACCATCCGTTCATACGATGGCCAGGTAGAGCTGCGCTTCGAGGCCCACGGC 
ATGCACCAGGAGCGGCTGAACCTCGGTCTGCTGGCGAGCAACTTCAAGCAGATATTCGGTTGTTTCAGCGGT 
GTGCTGCGTCCGCGAGGTCGTGCCGAGGTGAGGATCGAGCGGCTCTGGGGCTTCGTCGAGGACCAGTACGCC 
AAGTGGTAG