ViewGene
Locus Name:
GeneID:
Location:

GeneID:1858
TrivialName: PA14_35600
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_35600
PAO1 Ortholog Locus:PA2242
Sequence Length:1068
Protein Length:355
Start: 3164810
Stop: 3163743
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05630.1|AE004650_1 (AE004650) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 353/355 (99%), Positives = 353/355 (99%)
Sequence:
GTGAAAAAACGCTGGATTCAGATGGATGTGACCCGCGGCGTGGGCATCCTGATCATCGTCTTCGGACACAGC
TGGTTCGTCGCCAGTTCGCCGACCGTGCTCTATCCGTTGCTCTCTCCGTTCATCCTGCCACTGTTCTTCTTC
ATTTCCGGGGTGTTCTTCAGGACCGAGCAACCCTTCGGCGAGATGGCCCTGCGCAAGGCCGACGCCCTCCTC
AAGCCGTTCTTCGTGACCATGCTCGGCTACGTCATCCTCCGCGACCTGCTGCGCGGCCAGCCGCTGCTGCCG
GACATCGGCGGAGTGCTGTACGCCTCGGTCGACACCCTGCCCTGGCAGGCGCTCTGGTACCTGCCGCACTTC
TGGGTAGCGACCCTGTTCGCCTGGTTCATGCTGCGCGTCATCCAGCGTCTCGGCCTGTCCCTCGCCGCCAGT
TGCGTGCTGCTGGCCGTGCAACTGGGCCTGGGCATCCTGTTCCTCAAGACGTTCTGGCAGATCCCGGTGGAG
TTCGGCGGCGAACAGTACCTGCTGCCGGGCCTGCCGTTCAGCCTGGACATCACCCTGATCAGCAGCGCCCAC
TTCATGTTCGGCTATGTCCTGCGCGACGTCCTGCGTCGCCACCAGAGTTCGTTGCTGACCCTGTGCATCGCC
CTTGCCGTGACCACCGCCAGCTTCCTCTACTACCCGACGGTGGTGGACATGGCGCAGCGCCGCTACGACCAC
TGGTTCTGGGCCACCGTCCAGGCAGTGAGCGGCGTCTACCTGTGCTGGGCGCTGTCCGGGCTGATGATGAAG
ATCGACTGGCTGGGCAAGGCGATGACCTACATCGGCCAGTCGACCCTGATCCTGCTGATCTTCCACGGCGAG
ATCCAGCACAAGACCTTCAACCTGCTGGTCCACCTGGGCCTGTCGGAACCGGCCGCTGCCAGCGTCGCCCTG
GTGATCTCGGTGATCGCCTCGCTGCTGATCGGCGAAGTGATCAAGCGCGTCGCGCTGCTGCGCGCCCTCTAC
TTCCCCTTCCCGGTGCGCAAGAAGGCCGCCGCGGTCCAGGGCGGCGGCGAAGCGCGCTGA
Translation:
MKKRWIQMDVTRGVGILIIVFGHSWFVASSPTVLYPLLSPFILPLFFFISGVFFRTEQPFGEMALRKADALL
KPFFVTMLGYVILRDLLRGQPLLPDIGGVLYASVDTLPWQALWYLPHFWVATLFAWFMLRVIQRLGLSLAAS
CVLLAVQLGLGILFLKTFWQIPVEFGGEQYLLPGLPFSLDITLISSAHFMFGYVLRDVLRRHQSSLLTLCIA
LAVTTASFLYYPTVVDMAQRRYDHWFWATVQAVSGVYLCWALSGLMMKIDWLGKAMTYIGQSTLILLIFHGE
IQHKTFNLLVHLGLSEPAAASVALVISVIASLLIGEVIKRVALLRALYFPFPVRKKAAAVQGGGEAR*
AnnotationID:1867GeneID:1858
AnnotatorUID: danlee
Modification Date/Time: 2005-10-10 15:03:58
Gene Name:pslL
Confidence Code:4
GeneProduct:possible acetyltransferase
Cell Localization:()
Synonyms:PA2242
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3594
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gi|67780648|gb|EAM40263.1|  Acyltransferase 3 family [Polaromonas sp. JS666]
     Length=362
     Score =  191 bits (486),  Expect = 3e-47
     Identities = 117/347 (33%), Positives = 183/347 (52%), Gaps = 10/347 (2%)








 
Structural Features:
COG3594, NolL, Fucose 4-O-acetylase and related acetyltransferases 
[Carbohydrate transport and metabolism] 
CD-Length = 343 residues, 100.0% aligned
Score =  230 bits (589), Expect = 1e-61
Identities = 120/361 (33%), Positives = 167/361 (46%), Gaps = 24/361 (6%)






   
Genomic Context:






   
Comment:


















    ReferenceID:14447




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20866




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32532




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1858_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1858
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3261
                           PA2242_tr
                           translation of PA2242
                           355
                           99.43
                           99.43
                           0
                           1824.0
     

     
     
101055
                           gb|AAG05630.1|AE004650_1
                           (AE004650) hypothetical protein PA2242 [Pseudomonas aeruginosa PAO1]
                           355
                           99.15
                           99.43
                           0
                           1821.0
     

     






      

          
GC ORFID: 44860How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2242Glimmer Score: 

          
Start: 1789106Stop: 1790173

          
Length: 1068


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2242 translation of PA2242Homolog Bit Score 707.0

          
Other Homologs:  t_PA2242 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGAAAAAACGCTGGATTCAGATGGATGTGACCCGCGGCGTGGGCATCCTGATCATCGTCTTCGGACACAGC 
TGGTTCGTCGCCAGTTCGCCGACCGTGCTCTATCCGTTGCTCTCTCCGTTCATCCTGCCACTGTTCTTCTTC 
ATTTCCGGGGTGTTCTTCAGGACCGAGCAACCCTTCGGCGAGATGGCCCTGCGCAAGGCCGACGCCCTCCTC 
AAGCCGTTCTTCGTGACCATGCTCGGCTACGTCATCCTCCGCGACCTGCTGCGCGGCCAGCCGCTGCTGCCG 
GACATCGGCGGAGTGCTGTACGCCTCGGTCGACACCCTGCCCTGGCAGGCGCTCTGGTACCTGCCGCACTTC 
TGGGTAGCGACCCTGTTCGCCTGGTTCATGCTGCGCGTCATCCAGCGTCTCGGCCTGTCCCTCGCCGCCAGT 
TGCGTGCTGCTGGCCGTGCAACTGGGCCTGGGCATCCTGTTCCTCAAGACGTTCTGGCAGATCCCGGTGGAG 
TTCGGCGGCGAACAGTACCTGCTGCCGGGCCTGCCGTTCAGCCTGGACATCACCCTGATCAGCAGCGCCCAC 
TTCATGTTCGGCTATGTCCTGCGCGACGTCCTGCGTCGCCACCAGAGTTCGTTGCTGACCCTGTGCATCGCC 
CTTGCCGTGACCACCGCCAGCTTCCTCTACTACCCGACGGTGGTGGACATGGCGCAGCGCCGCTACGACCAC 
TGGTTCTGGGCCACCGTCCAGGCAGTGAGCGGCGTCTACCTGTGCTGGGCGCTGTCCGGGCTGATGATGAAG 
ATCGACTGGCTGGGCAAGGCGATGACCTACATCGGCCAGTCGACCCTGATCCTGCTGATCTTCCACGGCGAG 
ATCCAGCACAAGACCTTCAACCTGCTGGTCCACCTGGGCCTGTCGGAACCGGCCGCTGCCAGCGTCGCCCTG 
GTGATCTCGGTGATCGCCTCGCTGCTGATCGGCGAAGTGATCAAGCGCGTCGCGCTGCTGCGCGCCCTCTAC 
TTCCCCTTCCCGGTGCGCAAGAAGGCCGCCGCGGTCCAGGGCGGCGGCGAAGCGCGCTGA