ViewGene
Locus Name:
GeneID:
Location:

GeneID:1856
TrivialName: PA14_47490
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_47490
PAO1 Ortholog Locus:PA1293
Sequence Length:1062
Protein Length:353
Start: 4229408
Stop: 4230469
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04682.1|AE004559_1 (AE004559) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 350/353 (99%), Positives = 352/353 (99%)
Sequence:
ATGAAGAAGCTCAGCGGAATAATCGTCCTCCTGCTGGCTGGCGCGGCTCTTTACCTGGCCCTGAAGACCAGC
CCGATCGACCCGCTCGCCTGGGATGCCCCGGCCGCTCCGCAGATGACCGGGGTCCTCGAACCCAACGACACC
CTGATGAAGGCCGAGCTGCTTGGCCAGGGCCAACTGCACGGCCCCGAGGACACCGCCGTGGACAGCCAGGGC
CGCGTCTATGCCGGTCTCGCCGACGGCCGCGTGGTACGCCTGGACGCCAGCGGCAAGGTCGAGACCTTCGTC
GACACCGGCGGCCGCCCGCTGGGCATGGACTTCGATGCCGCCGGCAACCTGATCCTCGCCGACGCCTGGAAA
GGCCTGCTTCGCATCGATCCGCAGGGCAAGGTGGAAACCCTCGCCACCGAGGCCGACGGCGTCCCCTTCGCC
TTCACCGACGACCTCGACATCGCCAGCGACGGCCGCATCTACTTCAGCGACGCTTCCAGCAAGTTCCACCAG
CCCGACTACATCCTCGACCTGCTCGAGGCCCGACCGCACGGCCGCCTGCTGCGCTACGACCCGTCCACCGGC
AAGACCGAGGTGCTGCTCAAGGACCTGTACTTCGCCAATGGCGTGGCACTCTCGGCAAACGAGGACTTCGTA
CTGGTCAACGAGACCTACCGCTATCGCATCACCCGCTACTGGCTGAAAGGCGAGAAGGCTGGCCAGCACGAG
GTGTTCATCGACAACCTGCCGGGCTTGCCGGACAACCTCCAGGGCGACCGCAAGGGTACCTTCTGGGTGGCC
CTGCCGACCCCGCGCAAGGCCAACGCCGACTTCCTCCACCGGCATCCCTGGCTGAAGGCGCAGCTGGCCAAG
CTGCCGCGCATGTTCCTGCCCAAGCCGACCGCCTACGGGCTGGTCATCGCCATCGACGAACAGGGCAAGATC
GTCCGCAGCCTGCACGACACCAGCGGCCACCACCTGCGCATGATCACCTCGGCGAAGCCGGTGGGCGACCAG
CTCTACTTCGGCAGCCTGGAAAACGACCGGATCGGCCGCCTGGCGATCCCCTGA
Translation:
MKKLSGIIVLLLAGAALYLALKTSPIDPLAWDAPAAPQMTGVLEPNDTLMKAELLGQGQLHGPEDTAVDSQG
RVYAGLADGRVVRLDASGKVETFVDTGGRPLGMDFDAAGNLILADAWKGLLRIDPQGKVETLATEADGVPFA
FTDDLDIASDGRIYFSDASSKFHQPDYILDLLEARPHGRLLRYDPSTGKTEVLLKDLYFANGVALSANEDFV
LVNETYRYRITRYWLKGEKAGQHEVFIDNLPGLPDNLQGDRKGTFWVALPTPRKANADFLHRHPWLKAQLAK
LPRMFLPKPTAYGLVIAIDEQGKIVRSLHDTSGHHLRMITSAKPVGDQLYFGSLENDRIGRLAIP*
AnnotationID:1865GeneID:1856
AnnotatorUID: diggins
Modification Date/Time: 2005-05-26 07:07:27
Gene Name:
Confidence Code:3
GeneProduct:putative enzyme
Cell Localization:()
Synonyms:PA1293
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam03088,COG3386
Secondary Functional Category(ies):transport of small molecules
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>dbj|BAC53134.1| (AP005963) ABC transporter permease protein [Bradyrhizobium
           japonicum USDA 110]
          Length = 707

 Score =  210 bits (535), Expect = 9e-54
 Identities = 122/322 (37%), Positives = 168/322 (52%), Gaps = 14/322 (4%)

>dbj|BAB49029.1| (AP002998) permease protein of sugar ABC transporter [Mesorhizobium
           loti]
          Length = 707

 Score =  193 bits (491), Expect = 1e-48
 Identities = 118/330 (35%), Positives = 174/330 (52%), Gaps = 12/330 (3%)

>gb|AAN51413.1|AE011574_9 (AE011574) Strictosidine synthase precursor [Leptospira interrogans
           serovar lai str. 56601]
          Length = 358

 Score =  182 bits (461), Expect = 3e-45
 Identities = 113/347 (32%), Positives = 191/347 (55%), Gaps = 13/347 (3%)






 
Structural Features:
pfam03088, Str_synth, Strictosidine synthase.
Strictosidine synthase (E.C. 4.3.3.2) is a key enzyme in alkaloid biosynthesis.
CD-Length = 364 residues,  97.5% aligned
Score =  305 bits (783), Expect = 4e-84
Identities = 143/355 (40%), Positives = 195/355 (54%), Gaps = 17/355 (4%)

COG3386, Gluconolactonase [Carbohydrate transport and metabolism]
CD-Length = 307 residues, 100.0% aligned
Score =  179 bits (455), Expect = 4e-46
Identities = 98/328 (29%), Positives = 127/328 (38%), Gaps = 26/328 (7%)






   
Genomic Context:






   
Comment:


















    ReferenceID:3715




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20862




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37497




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1856_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1856
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3259
                           PA1293_tr
                           translation of PA1293
                           353
                           99.15
                           99.71
                           0
                           1826.0
     

     
     
101052
                           gb|AAG04682.1|AE004559_1
                           (AE004559) hypothetical protein PA1293 [Pseudomonas aeruginosa PAO1]
                           353
                           99.15
                           99.71
                           0
                           1826.0
     

     
     
101053
                           dbj|BAC90752.1|
                           (AP006577) glr2811 [Gloeobacter violaceus PCC 7421]
                           391
                           38.36
                           54.21
                           46
                           631.0
     

     






      

          
GC ORFID: 44858How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1293Glimmer Score: 

          
Start: 724501Stop: 723440

          
Length: 1062


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1293 translation of PA1293Homolog Bit Score 707.0

          
Other Homologs:  t_PA1293 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAGAAGCTCAGCGGAATAATCGTCCTCCTGCTGGCTGGCGCGGCTCTTTACCTGGCCCTGAAGACCAGC 
CCGATCGACCCGCTCGCCTGGGATGCCCCGGCCGCTCCGCAGATGACCGGGGTCCTCGAACCCAACGACACC 
CTGATGAAGGCCGAGCTGCTTGGCCAGGGCCAACTGCACGGCCCCGAGGACACCGCCGTGGACAGCCAGGGC 
CGCGTCTATGCCGGTCTCGCCGACGGCCGCGTGGTACGCCTGGACGCCAGCGGCAAGGTCGAGACCTTCGTC 
GACACCGGCGGCCGCCCGCTGGGCATGGACTTCGATGCCGCCGGCAACCTGATCCTCGCCGACGCCTGGAAA 
GGCCTGCTTCGCATCGATCCGCAGGGCAAGGTGGAAACCCTCGCCACCGAGGCCGACGGCGTCCCCTTCGCC 
TTCACCGACGACCTCGACATCGCCAGCGACGGCCGCATCTACTTCAGCGACGCTTCCAGCAAGTTCCACCAG 
CCCGACTACATCCTCGACCTGCTCGAGGCCCGACCGCACGGCCGCCTGCTGCGCTACGACCCGTCCACCGGC 
AAGACCGAGGTGCTGCTCAAGGACCTGTACTTCGCCAATGGCGTGGCACTCTCGGCAAACGAGGACTTCGTA 
CTGGTCAACGAGACCTACCGCTATCGCATCACCCGCTACTGGCTGAAAGGCGAGAAGGCTGGCCAGCACGAG 
GTGTTCATCGACAACCTGCCGGGCTTGCCGGACAACCTCCAGGGCGACCGCAAGGGTACCTTCTGGGTGGCC 
CTGCCGACCCCGCGCAAGGCCAACGCCGACTTCCTCCACCGGCATCCCTGGCTGAAGGCGCAGCTGGCCAAG 
CTGCCGCGCATGTTCCTGCCCAAGCCGACCGCCTACGGGCTGGTCATCGCCATCGACGAACAGGGCAAGATC 
GTCCGCAGCCTGCACGACACCAGCGGCCACCACCTGCGCATGATCACCTCGGCGAAGCCGGTGGGCGACCAG 
CTCTACTTCGGCAGCCTGGAAAACGACCGGATCGGCCGCCTGGCGATCCCCTGA