ViewGene
Locus Name:
GeneID:
Location:

GeneID:1855
TrivialName: PA14_51330
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_51330
PAO1 Ortholog Locus:PA1004
Sequence Length:1059
Protein Length:352
Start: 4562088
Stop: 4561030
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04393.1|AE004533_4 (AE004533) quinolinate synthetase A [Pseudomonas aeruginosa PAO1]
Identities = 352/352 (100%), Positives = 352/352 (100%)
Sequence:
ATGACGCACATTTCCGAACGACTCCTGGTCCAGGCCCACCTGGCCGCCAAGCAACCCCGCGTGTTGAGCGAG
CAGGAGAGCGCCGAGCATCGCGCGGCGATCGCGGCCGAACTGAAGGCGCAGAACGCGGTACTGGTGGCGCAT
TACTACTGCGATCCGGTGATCCAGGCGTTGGCCGAGGAGACCGGCGGTTGCGTATCCGATTCGCTGGAGATG
GCCCGTTTCGGCAACCAGCATCCGGCGCAGACGGTGGTCGTGGCTGGGGTGCGCTTCATGGGCGAGACGGCG
AAGATCCTCAACCCTGAGAAGCGCGTGCTGATGCCGACCCTCGAAGCGACCTGCTCGCTCGACCTGGGCTGC
CCGGTGGATGAATTCTCGGCATTCTGCGACCAGCATCCGGAACGGACCGTGGTGGTCTATGCGAACACCTCC
GCGGCGGTGAAGGCACGCGCCGACTGGGTCGTGACCTCCAGTTGCGCGGTGGAGATCGTCGAACACCTGATG
GACAACGGCGAGCCTATCCTCTGGGCACCGGACCAGCACCTGGGACGCTACATCCAGCGCGAGACGGGGGCC
GACATGCTGCTCTGGGACGGCGCCTGCATCGTCCACGAGGAGTTCAAGGCCAAGCAGTTGGAAGACATGAAG
GCGCTCTACCCTGACGCCGCCATCCTGGTCCACCCCGAATCGCCGGAAAGCGTGGTCGCGCTGGCCGATGCC
GTGGGCTCGACCAGCCAGTTGATCAAGGCCGCGCAGACCCTGCCGAACAAGACCTTCATCGTCGCCACCGAT
CGCGGCATCTTCTACAAGATGCAGCAGCTGTGCCCGGACAAGGATTTCATCGAGGCCCCCACCGCCGGCAAC
GGCGCCGCCTGCCGCAGTTGCGCGCACTGCCCGTGGATGGCGATGAACACGCTCGAGCGGACCCTGGCCTGC
CTGCGCGAGGGCAGCGGGGAAATCTTCGTCGACCCGGCGTTGATCCCGCGGGCGGTCCGTCCGCTCAAGCGC
ATGCTCGACTTCACCCAGGCCGCGCGCCTGCGCCAGGCCGGGAACGCCTGA
Translation:
MTHISERLLVQAHLAAKQPRVLSEQESAEHRAAIAAELKAQNAVLVAHYYCDPVIQALAEETGGCVSDSLEM
ARFGNQHPAQTVVVAGVRFMGETAKILNPEKRVLMPTLEATCSLDLGCPVDEFSAFCDQHPERTVVVYANTS
AAVKARADWVVTSSCAVEIVEHLMDNGEPILWAPDQHLGRYIQRETGADMLLWDGACIVHEEFKAKQLEDMK
ALYPDAAILVHPESPESVVALADAVGSTSQLIKAAQTLPNKTFIVATDRGIFYKMQQLCPDKDFIEAPTAGN
GAACRSCAHCPWMAMNTLERTLACLREGSGEIFVDPALIPRAVRPLKRMLDFTQAARLRQAGNA*
AnnotationID:1864GeneID:1855
AnnotatorUID: danlee
Modification Date/Time: 2004-05-17 16:04:00
Gene Name:nadA
Confidence Code:2
GeneProduct:quinolinate synthetase A
Cell Localization:(1) Cytoplasmic
Synonyms:PA1004
Cell Localization Confidence Code:2
MolecularFunction:
Functional Category:(4) Biosynthesis of cofactors, prosthetic groups and carriers
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0379, pfam02445
Secondary Functional Category(ies):Amino acid biosynthesis and metabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG0379, NadA, Quinolinate synthase [Coenzyme metabolism].  Score: 414, 9e-117
pfam02445, NadA, Quinolinate synthetase A protein. Score: 368, 5e-103






   
Genomic Context:
The nadB gene is elsewhere in the genome (in E. coli, nadA and nadB are adjoining genes). 






   
Comment:


















    ReferenceID:3713




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20860




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1855
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3258
                           PA1004_tr
                           translation of PA1004
                           352
                           99.99
                           99.99
                           0
                           1827.0
     

     
     
101010
                           gb|AAG04393.1|AE004533_4
                           (AE004533) quinolinate synthetase A [Pseudomonas aeruginosa PAO1]
                           352
                           99.99
                           99.99
                           0
                           1827.0
     

     
     
101012
                           gb|AAO57420.1|
                           (AE016870) quinolinate synthetase complex, subunit A [Pseudomonas syringae pv. tomato str. DC3000]
                           352
                           87.78
                           92.89
                           0
                           1630.0
     

     
     
101011
                           gb|AAN66855.1|AE016314_2
                           (AE016778) quinolinate synthetase complex, subunit A [Pseudomonas putida KT2440]
                           352
                           87.50
                           94.31
                           0
                           1643.0
     

     
     
101013
                           gb|AAF72624.2|
                           (AF257101) quinolinic acid synthetase [Pseudomonas fluorescens]
                           359
                           86.07
                           92.20
                           7
                           1621.0
     

     






      

          
GC ORFID: 44857How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1004Glimmer Score: 

          
Start: 391819Stop: 392877

          
Length: 1059


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1004 translation of PA1004Homolog Bit Score 708.0

          
Other Homologs:  psyr_15may02_Scaffold10_revised_gene1721 (ORF: BLASTX 633.0), t_PA1004 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACGCACATTTCCGAACGACTCCTGGTCCAGGCCCACCTGGCCGCCAAGCAACCCCGCGTGTTGAGCGAG 
CAGGAGAGCGCCGAGCATCGCGCGGCGATCGCGGCCGAACTGAAGGCGCAGAACGCGGTACTGGTGGCGCAT 
TACTACTGCGATCCGGTGATCCAGGCGTTGGCCGAGGAGACCGGCGGTTGCGTATCCGATTCGCTGGAGATG 
GCCCGTTTCGGCAACCAGCATCCGGCGCAGACGGTGGTCGTGGCTGGGGTGCGCTTCATGGGCGAGACGGCG 
AAGATCCTCAACCCTGAGAAGCGCGTGCTGATGCCGACCCTCGAAGCGACCTGCTCGCTCGACCTGGGCTGC 
CCGGTGGATGAATTCTCGGCATTCTGCGACCAGCATCCGGAACGGACCGTGGTGGTCTATGCGAACACCTCC 
GCGGCGGTGAAGGCACGCGCCGACTGGGTCGTGACCTCCAGTTGCGCGGTGGAGATCGTCGAACACCTGATG 
GACAACGGCGAGCCTATCCTCTGGGCACCGGACCAGCACCTGGGACGCTACATCCAGCGCGAGACGGGGGCC 
GACATGCTGCTCTGGGACGGCGCCTGCATCGTCCACGAGGAGTTCAAGGCCAAGCAGTTGGAAGACATGAAG 
GCGCTCTACCCTGACGCCGCCATCCTGGTCCACCCCGAATCGCCGGAAAGCGTGGTCGCGCTGGCCGATGCC 
GTGGGCTCGACCAGCCAGTTGATCAAGGCCGCGCAGACCCTGCCGAACAAGACCTTCATCGTCGCCACCGAT 
CGCGGCATCTTCTACAAGATGCAGCAGCTGTGCCCGGACAAGGATTTCATCGAGGCCCCCACCGCCGGCAAC 
GGCGCCGCCTGCCGCAGTTGCGCGCACTGCCCGTGGATGGCGATGAACACGCTCGAGCGGACCCTGGCCTGC 
CTGCGCGAGGGCAGCGGGGAAATCTTCGTCGACCCGGCGTTGATCCCGCGGGCGGTCCGTCCGCTCAAGCGC 
ATGCTCGACTTCACCCAGGCCGCGCGCCTGCGCCAGGCCGGGAACGCCTGA