ViewGene
Locus Name:
GeneID:
Location:

GeneID:1854
TrivialName: PA14_04190
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_04190
PAO1 Ortholog Locus:PA0321
Sequence Length:1035
Protein Length:344
Start: 375617
Stop: 374583
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03710.1|AE004470_4 (AE004470) probable acetylpolyamine aminohydrolase [Pseudomonas aeruginosa PAO1]
Identities = 343/344 (99%), Positives = 343/344 (99%)
Sequence:
ATGCTGACCATCTACAGCGACGACCATCGCCTGCACCACGGCCGGCACGAACTGATCGGCGGCCAGTTCACC
CCCTGCTTCGAAAAACCCAGCCGCGCCGACATGGTCCTCGACCGCGTGAAGGCCGTCGGCCTCGGCGAAGTC
CGCGCACCGCGCGACTTCGGCCTGGAACCGATCCGCCGGGTGCACAGCGAGGGTTTCGTGCGTTTCCTGCAG
AACGCCTGGCAGGACTGGCTGGCCACCGGCCGCAGCCACGACATGCTGCCGATCGCCTGGCCGACCCGGCGC
CTGCGGCAGACGGAGCCGGACAACATCGACGGTCGCCTCGGCTACTACTCCTTCGACGCCGGCGCGCCGATC
ACCGCCGGGACCTGGCAGGCGATCACCAGTTCGGCCAACGTCGCCCTCAGCGGCCAGTCCGAACTCGCCAAC
GGCGCGCGCTCGGTATTTTCGCTCTGTCGCCCGCCGGGCCACCACGCCGCGGCCGACTACATGGGCGGCTAT
TGCTTCTTCAACAATGCCGCCATCGCCGCCCAGGCCTTCCTCGACCGGGGCGCCGGGCGGGTGGCGATCCTC
GACGTCGACTACCACCATGGCAACGGCACCCAGGACATCTTCTACGACCGCGCCGATGTGCTGTTCACCTCG
ATCCACGGCGATCCGCGCTTCGAATACCCCTATTTCCTCGGCTACGCCGACGAGAAGGGCAACGGCGTCGGC
ACCGGCTACAACTTCAACTACCCACTGGCGGCCGGCAGCGACTGGGCGACCTGGAGCCAGGCGCTGCAGGCG
GCGATCCGGCAGATCCAGGCCTATGCGGCGGACGTCCTGATCGTTTCCCTGGGGGTGGATACCTTCAAGGAG
GACCCGATTTCCCAGTTCCGCCTGGACAGCCCCGACTACCTGCGCATGGGCGAAGCCATCGGCAAGCTCGGC
CTGGCCACGCTGTTCGTGATGGAGGGAGGCTACGCGGTGGAGGAAATCGGGATCAACGCGGTGAACGTGCTA
CAGGGTTTCGAAGGGGTTCACCGGTAA
Translation:
MLTIYSDDHRLHHGRHELIGGQFTPCFEKPSRADMVLDRVKAVGLGEVRAPRDFGLEPIRRVHSEGFVRFLQ
NAWQDWLATGRSHDMLPIAWPTRRLRQTEPDNIDGRLGYYSFDAGAPITAGTWQAITSSANVALSGQSELAN
GARSVFSLCRPPGHHAAADYMGGYCFFNNAAIAAQAFLDRGAGRVAILDVDYHHGNGTQDIFYDRADVLFTS
IHGDPRFEYPYFLGYADEKGNGVGTGYNFNYPLAAGSDWATWSQALQAAIRQIQAYAADVLIVSLGVDTFKE
DPISQFRLDSPDYLRMGEAIGKLGLATLFVMEGGYAVEEIGINAVNVLQGFEGVHR*
AnnotationID:1863GeneID:1854
AnnotatorUID: diggins
Modification Date/Time: 2005-03-24 12:12:45
Gene Name:
Confidence Code:3
GeneProduct:acetylpolyamine aminohydrolase
Cell Localization:()
Synonyms:aphA
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(5) Carbon compound catabolism
Alternate Gene Product Name:histone deacetylase family protein
Functional Category Confidence Code:5
COGs:pfam00850
Secondary Functional Category(ies):transcriptional regulator
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN70905.1|AE016734_9 (AE016794) acetylpolyamine aminohydrolase [Pseudomonas putida
           KT2440]
          Length = 347

 Score =  499 bits (1285), Expect = e-141
 Identities = 233/340 (68%), Positives = 271/340 (79%)








 
Structural Features:
pfam00850, Hist_deacetyl, Histone deacetylase family.
CD-Length = 316 residues,  92.4% aligned
Score =  200 bits (510), Expect = 2e-52
Identities = 95/316 (30%), Positives = 135/316 (42%), Gaps = 29/316 (9%)






   
Genomic Context:






   
Comment:


















    ReferenceID:3711




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20858




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33665




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1854_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1854
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3256
                           PA0321_tr
                           translation of PA0321
                           344
                           99.70
                           99.70
                           0
                           1831.0
     

     
     
100999
                           gb|AAG03710.1|AE004470_4
                           (AE004470) probable acetylpolyamine aminohydrolase [Pseudomonas aeruginosa PAO1]
                           344
                           99.70
                           99.70
                           0
                           1831.0
     

     
     
3257
                           PA1409_tr
                           translation of PA1409
                           346
                           68.78
                           77.16
                           2
                           1262.0
     

     
     
101001
                           gb|AAG04798.1|AE004570_6
                           (AE004570) acetylpolyamine aminohydrolase [Pseudomonas aeruginosa PAO1]
                           346
                           68.78
                           77.16
                           2
                           1262.0
     

     
     
101000
                           gb|AAN70905.1|AE016734_9
                           (AE016794) acetylpolyamine aminohydrolase [Pseudomonas putida KT2440]
                           347
                           67.14
                           78.09
                           3
                           1282.0
     

     






      

          
GC ORFID: 44856How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0321Glimmer Score: 

          
Start: 6176959Stop: 6175925

          
Length: 1035


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA0321 translation of PA0321Homolog Bit Score 709.0

          
Other Homologs:  t_PA1409 (ORF: BLASTX 489.0), t_PA0321 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCTGACCATCTACAGCGACGACCATCGCCTGCACCACGGCCGGCACGAACTGATCGGCGGCCAGTTCACC 
CCCTGCTTCGAAAAACCCAGCCGCGCCGACATGGTCCTCGACCGCGTGAAGGCCGTCGGCCTCGGCGAAGTC 
CGCGCACCGCGCGACTTCGGCCTGGAACCGATCCGCCGGGTGCACAGCGAGGGTTTCGTGCGTTTCCTGCAG 
AACGCCTGGCAGGACTGGCTGGCCACCGGCCGCAGCCACGACATGCTGCCGATCGCCTGGCCGACCCGGCGC 
CTGCGGCAGACGGAGCCGGACAACATCGACGGTCGCCTCGGCTACTACTCCTTCGACGCCGGCGCGCCGATC 
ACCGCCGGGACCTGGCAGGCGATCACCAGTTCGGCCAACGTCGCCCTCAGCGGCCAGTCCGAACTCGCCAAC 
GGCGCGCGCTCGGTATTTTCGCTCTGTCGCCCGCCGGGCCACCACGCCGCGGCCGACTACATGGGCGGCTAT 
TGCTTCTTCAACAATGCCGCCATCGCCGCCCAGGCCTTCCTCGACCGGGGCGCCGGGCGGGTGGCGATCCTC 
GACGTCGACTACCACCATGGCAACGGCACCCAGGACATCTTCTACGACCGCGCCGATGTGCTGTTCACCTCG 
ATCCACGGCGATCCGCGCTTCGAATACCCCTATTTCCTCGGCTACGCCGACGAGAAGGGCAACGGCGTCGGC 
ACCGGCTACAACTTCAACTACCCACTGGCGGCCGGCAGCGACTGGGCGACCTGGAGCCAGGCGCTGCAGGCG 
GCGATCCGGCAGATCCAGGCCTATGCGGCGGACGTCCTGATCGTTTCCCTGGGGGTGGATACCTTCAAGGAG 
GACCCGATTTCCCAGTTCCGCCTGGACAGCCCCGACTACCTGCGCATGGGCGAAGCCATCGGCAAGCTCGGC 
CTGGCCACGCTGTTCGTGATGGAGGGAGGCTACGCGGTGGAGGAAATCGGGATCAACGCGGTGAACGTGCTA 
CAGGGTTTCGAAGGGGTTCACCGGTAA