ViewGene
Locus Name:
GeneID:
Location:

GeneID:1853
TrivialName: PA14_00810
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_00810
PAO1 Ortholog Locus:PA0069
Sequence Length:1059
Protein Length:352
Start: 78760
Stop: 79818
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03459.1|AE004446_7 (AE004446) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 352/352 (100%), Positives = 352/352 (100%)
Sequence:
ATGAGCGCTCCCCTGCCCCCGCGCGGTCGCGGTACCGCCAGCAACCCCCTCAACCGCTTCGCCCCGACCCAC
AGCGAGGCCTTCGACGATGGCTGGGAGCAGGACGTGCCGCCGATCCAGCTCACCGAGGTGCGCGAGGAGATC
GCCCGCACGGTGATCTCCCGCAACCAGTCGCCGGACCTCCCTTTCGATCGCTCGATCAATCCCTACCGTGGT
TGCGAGCATGGTTGCATCTACTGCTATGCGCGGCCCAGCCATGCCTATTGGGACCTCTCGCCGGGGATCGAT
TTCGAGACCCGGTTGATCGCCAAGAGCAACGTCGCCAGCGCGCTGGAGCAGGAACTGAGCAAGCCCGGCTAT
CGCTGCGCGCCGATCAACCTGGGCGCCAATACCGACCCCTACCAGCCGCTGGAACGCGAACGCCGCCTGACC
CGCCAGGTGCTGGAGGTGCTGCTGCGCTTCCGTCACCCGCTGACCATCGTCACCAAGGGCTCGCTGATCCTT
CGCGACCTCGACCTGCTGCGCGAACTGGCGGAGCAGAACCTGGTGGCGGTGATGATCAGCCTGACCACCCTC
GACGACGAGCTGAAGCGCATTCTCGAACCGCGCGCGGCGGCGCCCTCGGCGCGACTGCGGGCGATCCGCACG
CTCAGCGGCAACGGCATCCCGGTGGGCGTGCTCTGCTCGCCGATGATCCCGATGGTCAACGACATGGAGCTG
GAGCGCCTGCTCCAGGCGGCGCGGGACGCCGGCGCGCGCAGCGCCGCGTACATGCTCCTGCGCCTGCCGCGC
GAAGTCGGCCCGCTGTTCGAGGAATGGCTGGCGGCGCACTACCCGCAACGCGCCGAGCATGTGATGAGCTTG
GTCCGCCAATGCCGTGGCGGCGAGGTCTACGACAGCCGCTTCGGCCACCGCTTTCGCGGCCAGGGACCGTTC
GCCGACCTGCTGGCGCAGCGTTTCGCGGTGGCGATGAAGCGCCTCGGGCTGGACCGCCGCGAGGGCTTCGGG
CTGGATTGCAGCCGGTTCGCCGTGCCGGGGGCGCAGATGGCGTTGTTCTAG
Translation:
MSAPLPPRGRGTASNPLNRFAPTHSEAFDDGWEQDVPPIQLTEVREEIARTVISRNQSPDLPFDRSINPYRG
CEHGCIYCYARPSHAYWDLSPGIDFETRLIAKSNVASALEQELSKPGYRCAPINLGANTDPYQPLERERRLT
RQVLEVLLRFRHPLTIVTKGSLILRDLDLLRELAEQNLVAVMISLTTLDDELKRILEPRAAAPSARLRAIRT
LSGNGIPVGVLCSPMIPMVNDMELERLLQAARDAGARSAAYMLLRLPREVGPLFEEWLAAHYPQRAEHVMSL
VRQCRGGEVYDSRFGHRFRGQGPFADLLAQRFAVAMKRLGLDRREGFGLDCSRFAVPGAQMALF*
AnnotationID:1862GeneID:1853
AnnotatorUID: diggins
Modification Date/Time: 2005-03-22 17:05:51
Gene Name:
Confidence Code:3
GeneProduct:putative DNA repair photolyase
Cell Localization:()
Synonyms:PA0069
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(11) DNA replication, recombination, modification and repair
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1533
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO58680.1| (AE016875) radical SAM domain protein [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 352

 Score =  541 bits (1395), Expect = e-153
 Identities = 261/351 (74%), Positives = 300/351 (85%)

>gb|AAK23311.1| (AE005808) moaA/nifB/pqqE family protein [Caulobacter crescentus
           CB15]
          Length = 360

 Score =  378 bits (971), Expect = e-104
 Identities = 194/349 (55%), Positives = 242/349 (69%), Gaps = 5/349 (1%)








 
Structural Features:
COG1533, SplB, DNA repair photolyase 
[DNA replication, recombination, and repair]
CD-Length = 297 residues,  96.6% aligned
Score =  313 bits (804), Expect = 2e-86
Identities = 141/292 (48%), Positives = 192/292 (65%), Gaps = 5/292 (1%)






   
Genomic Context:






   
Comment:


















    ReferenceID:3709




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20856




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33424




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1853_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1853
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3255
                           PA0069_tr
                           translation of PA0069
                           352
                           99.99
                           99.99
                           0
                           1831.0
     

     
     
100979
                           gb|AAG03459.1|AE004446_7
                           (AE004446) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           352
                           99.99
                           99.99
                           0
                           1831.0
     

     
     
100980
                           gb|AAN65733.1|AE016199_5
                           (AE016774) conserved hypothetical protein [Pseudomonas putida KT2440]
                           352
                           75.56
                           84.94
                           0
                           1402.0
     

     
     
100981
                           gb|AAO58680.1|
                           (AE016875) radical SAM domain protein [Pseudomonas syringae pv. tomato str. DC3000]
                           352
                           74.14
                           85.22
                           0
                           1395.0
     

     
     
100982
                           gb|AAM39334.1|
                           (AE012094) conserved hypothetical protein [Xanthomonas campestris pv. campestris str. ATCC 33913]
                           366
                           56.01
                           69.12
                           16
                           1026.0
     

     






      

          
GC ORFID: 44855How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0069Glimmer Score: 

          
Start: 5880097Stop: 5881155

          
Length: 1059


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA0069 translation of PA0069Homolog Bit Score 709.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3879 (ORF: BLASTX 538.0), t_PA0069 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCGCTCCCCTGCCCCCGCGCGGTCGCGGTACCGCCAGCAACCCCCTCAACCGCTTCGCCCCGACCCAC 
AGCGAGGCCTTCGACGATGGCTGGGAGCAGGACGTGCCGCCGATCCAGCTCACCGAGGTGCGCGAGGAGATC 
GCCCGCACGGTGATCTCCCGCAACCAGTCGCCGGACCTCCCTTTCGATCGCTCGATCAATCCCTACCGTGGT 
TGCGAGCATGGTTGCATCTACTGCTATGCGCGGCCCAGCCATGCCTATTGGGACCTCTCGCCGGGGATCGAT 
TTCGAGACCCGGTTGATCGCCAAGAGCAACGTCGCCAGCGCGCTGGAGCAGGAACTGAGCAAGCCCGGCTAT 
CGCTGCGCGCCGATCAACCTGGGCGCCAATACCGACCCCTACCAGCCGCTGGAACGCGAACGCCGCCTGACC 
CGCCAGGTGCTGGAGGTGCTGCTGCGCTTCCGTCACCCGCTGACCATCGTCACCAAGGGCTCGCTGATCCTT 
CGCGACCTCGACCTGCTGCGCGAACTGGCGGAGCAGAACCTGGTGGCGGTGATGATCAGCCTGACCACCCTC 
GACGACGAGCTGAAGCGCATTCTCGAACCGCGCGCGGCGGCGCCCTCGGCGCGACTGCGGGCGATCCGCACG 
CTCAGCGGCAACGGCATCCCGGTGGGCGTGCTCTGCTCGCCGATGATCCCGATGGTCAACGACATGGAGCTG 
GAGCGCCTGCTCCAGGCGGCGCGGGACGCCGGCGCGCGCAGCGCCGCGTACATGCTCCTGCGCCTGCCGCGC 
GAAGTCGGCCCGCTGTTCGAGGAATGGCTGGCGGCGCACTACCCGCAACGCGCCGAGCATGTGATGAGCTTG 
GTCCGCCAATGCCGTGGCGGCGAGGTCTACGACAGCCGCTTCGGCCACCGCTTTCGCGGCCAGGGACCGTTC 
GCCGACCTGCTGGCGCAGCGTTTCGCGGTGGCGATGAAGCGCCTCGGGCTGGACCGCCGCGAGGGCTTCGGG 
CTGGATTGCAGCCGGTTCGCCGTGCCGGGGGCGCAGATGGCGTTGTTCTAG